Result of FASTA (omim) for pF1KB3766
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3766, 504 aa
  1>>>pF1KB3766 504 - 504 aa - 504 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0506+/-0.000433; mu= 11.1633+/- 0.027
 mean_var=145.5605+/-29.939, 0's: 0 Z-trim(114.4): 103  B-trim: 303 in 1/53
 Lambda= 0.106305
 statistics sampled from 24111 (24232) to 24111 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.284), width:  16
 Scan time:  7.930

The best scores are:                                      opt bits E(85289)
NP_006251 (OMIM: 601184,616192) dnaJ homolog subfa ( 504) 3318 521.0 3.1e-147
XP_016876163 (OMIM: 601184,616192) PREDICTED: dnaJ ( 421) 2782 438.8 1.5e-122
XP_011519406 (OMIM: 601184,616192) PREDICTED: dnaJ ( 533) 2519 398.5 2.5e-110
XP_011519407 (OMIM: 601184,616192) PREDICTED: dnaJ ( 450) 2506 396.5 8.7e-110
XP_016876164 (OMIM: 601184,616192) PREDICTED: dnaJ ( 383) 2503 395.9 1.1e-109
NP_003306 (OMIM: 601964) dnaJ homolog subfamily C  ( 494)  638 110.0 1.6e-23
XP_011523469 (OMIM: 601964) PREDICTED: dnaJ homolo ( 438)  609 105.5 3.3e-22
XP_011523471 (OMIM: 601964) PREDICTED: dnaJ homolo ( 438)  609 105.5 3.3e-22
XP_011523470 (OMIM: 601964) PREDICTED: dnaJ homolo ( 438)  609 105.5 3.3e-22
NP_001138238 (OMIM: 601964) dnaJ homolog subfamily ( 438)  609 105.5 3.3e-22
XP_016880483 (OMIM: 601964) PREDICTED: dnaJ homolo ( 438)  609 105.5 3.3e-22
XP_016867122 (OMIM: 603511,611332) PREDICTED: dnaJ ( 211)  280 54.8 2.9e-07
NP_005485 (OMIM: 603511,611332) dnaJ homolog subfa ( 241)  280 54.8 3.2e-07
XP_006715886 (OMIM: 603511,611332) PREDICTED: dnaJ ( 257)  280 54.9 3.4e-07
NP_490647 (OMIM: 603511,611332) dnaJ homolog subfa ( 326)  280 54.9   4e-07
XP_011514006 (OMIM: 603511,611332) PREDICTED: dnaJ ( 334)  280 55.0 4.1e-07
XP_005249572 (OMIM: 603511,611332) PREDICTED: dnaJ ( 334)  280 55.0 4.1e-07
XP_005249573 (OMIM: 603511,611332) PREDICTED: dnaJ ( 334)  280 55.0 4.1e-07
XP_006713582 (OMIM: 611337) PREDICTED: dnaJ homolo ( 232)  266 52.7 1.4e-06
NP_699161 (OMIM: 611337) dnaJ homolog subfamily B  ( 232)  266 52.7 1.4e-06
NP_057390 (OMIM: 611341) dnaJ homolog subfamily B  ( 358)  251 50.5 9.4e-06
XP_006716814 (OMIM: 611328) PREDICTED: dnaJ homolo ( 348)  249 50.2 1.1e-05
XP_005251485 (OMIM: 611328) PREDICTED: dnaJ homolo ( 348)  249 50.2 1.1e-05
NP_036398 (OMIM: 611328) dnaJ homolog subfamily B  ( 348)  249 50.2 1.1e-05
NP_660157 (OMIM: 611336) dnaJ homolog subfamily B  ( 309)  248 50.0 1.2e-05
XP_011516144 (OMIM: 611328) PREDICTED: dnaJ homolo ( 420)  249 50.3 1.3e-05
NP_001128477 (OMIM: 611328) dnaJ homolog subfamily ( 420)  249 50.3 1.3e-05
NP_001128476 (OMIM: 611328) dnaJ homolog subfamily ( 462)  249 50.3 1.4e-05
XP_005269989 (OMIM: 608376) PREDICTED: dnaJ homolo ( 409)  246 49.8 1.8e-05
NP_060096 (OMIM: 608376) dnaJ homolog subfamily B  ( 409)  246 49.8 1.8e-05
NP_001002762 (OMIM: 608376) dnaJ homolog subfamily ( 409)  246 49.8 1.8e-05
XP_005269988 (OMIM: 608376) PREDICTED: dnaJ homolo ( 411)  246 49.8 1.8e-05
NP_001034639 (OMIM: 604139,614881,617017) dnaJ hom ( 277)  243 49.2 1.8e-05
NP_006727 (OMIM: 604139,614881,617017) dnaJ homolo ( 324)  243 49.3 2.1e-05
NP_001304028 (OMIM: 611327) dnaJ homolog subfamily ( 337)  231 47.4 7.6e-05
NP_008965 (OMIM: 611327) dnaJ homolog subfamily B  ( 337)  231 47.4 7.6e-05
NP_006136 (OMIM: 604572) dnaJ homolog subfamily B  ( 340)  229 47.1 9.4e-05
NP_036460 (OMIM: 602634) dnaJ homolog subfamily B  ( 223)  225 46.4 0.00011
NP_001128582 (OMIM: 608382) dnaJ homolog subfamily ( 453)  226 46.8 0.00016
NP_005138 (OMIM: 608382) dnaJ homolog subfamily A  ( 480)  226 46.8 0.00017
NP_001530 (OMIM: 602837) dnaJ homolog subfamily A  ( 397)  224 46.4 0.00018
NP_001304032 (OMIM: 611327) dnaJ homolog subfamily (  77)  211 43.8 0.00021
NP_001012339 (OMIM: 617048,617052) dnaJ homolog su ( 531)  214 45.0 0.00065
XP_005248307 (OMIM: 617048,617052) PREDICTED: dnaJ ( 553)  214 45.0 0.00067
NP_919259 (OMIM: 617048,617052) dnaJ homolog subfa ( 576)  214 45.0 0.00069
XP_011512268 (OMIM: 617048,617052) PREDICTED: dnaJ ( 598)  214 45.0 0.00071
XP_005248306 (OMIM: 617048,617052) PREDICTED: dnaJ ( 631)  214 45.1 0.00074
XP_011512267 (OMIM: 617048,617052) PREDICTED: dnaJ ( 676)  214 45.1 0.00078
NP_001139547 (OMIM: 611477) RNA polymerase II-asso ( 631)  209 44.3  0.0013
NP_078880 (OMIM: 611477) RNA polymerase II-associa ( 665)  209 44.3  0.0013


>>NP_006251 (OMIM: 601184,616192) dnaJ homolog subfamily  (504 aa)
 initn: 3318 init1: 3318 opt: 3318  Z-score: 2764.3  bits: 521.0 E(85289): 3.1e-147
Smith-Waterman score: 3318; 100.0% identity (100.0% similar) in 504 aa overlap (1-504:1-504)

               10        20        30        40        50        60
pF1KB3 MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 QDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQGGGGNPFHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQGGGGNPFHR
              430       440       450       460       470       480

              490       500    
pF1KB3 SWNSWQGFNPFSSGGPFRFKFHFN
       ::::::::::::::::::::::::
NP_006 SWNSWQGFNPFSSGGPFRFKFHFN
              490       500    

>>XP_016876163 (OMIM: 601184,616192) PREDICTED: dnaJ hom  (421 aa)
 initn: 2782 init1: 2782 opt: 2782  Z-score: 2321.1  bits: 438.8 E(85289): 1.5e-122
Smith-Waterman score: 2782; 100.0% identity (100.0% similar) in 421 aa overlap (84-504:1-421)

            60        70        80        90       100       110   
pF1KB3 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH
                                     ::::::::::::::::::::::::::::::
XP_016                               MGKSKAALPDLTKVIQLKMDFTAARLQRGH
                                             10        20        30

           120       130       140       150       160       170   
pF1KB3 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA
               40        50        60        70        80        90

           180       190       200       210       220       230   
pF1KB3 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY
              100       110       120       130       140       150

           240       250       260       270       280       290   
pF1KB3 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES
              160       170       180       190       200       210

           300       310       320       330       340       350   
pF1KB3 VMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE
              220       230       240       250       260       270

           360       370       380       390       400       410   
pF1KB3 EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA
              280       290       300       310       320       330

           420       430       440       450       460       470   
pF1KB3 YRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQGG
              340       350       360       370       380       390

           480       490       500    
pF1KB3 GGNPFHRSWNSWQGFNPFSSGGPFRFKFHFN
       :::::::::::::::::::::::::::::::
XP_016 GGNPFHRSWNSWQGFNPFSSGGPFRFKFHFN
              400       410       420 

>>XP_011519406 (OMIM: 601184,616192) PREDICTED: dnaJ hom  (533 aa)
 initn: 2481 init1: 2481 opt: 2519  Z-score: 2101.8  bits: 398.5 E(85289): 2.5e-110
Smith-Waterman score: 3250; 94.6% identity (94.6% similar) in 533 aa overlap (1-504:1-533)

               10        20        30        40        50        60
pF1KB3 MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK
               70        80        90       100       110       120

              130                                    140       150 
pF1KB3 LDEAEDDFKKV-----------------------------LKSNPSENEEKEAQSQLIKS
       :::::::::::                             ::::::::::::::::::::
XP_011 LDEAEDDFKKVVFPVPSLLGLQRSLLDDLYLLFWFFLMKKLKSNPSENEEKEAQSQLIKS
              130       140       150       160       170       180

             160       170       180       190       200       210 
pF1KB3 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL
              190       200       210       220       230       240

             220       230       240       250       260       270 
pF1KB3 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL
              250       260       270       280       290       300

             280       290       300       310       320       330 
pF1KB3 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE
              310       320       330       340       350       360

             340       350       360       370       380       390 
pF1KB3 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ
              370       380       390       400       410       420

             400       410       420       430       440       450 
pF1KB3 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD
              430       440       450       460       470       480

             460       470       480       490       500    
pF1KB3 PEMRKKFDDGEDPLDAESQQGGGGNPFHRSWNSWQGFNPFSSGGPFRFKFHFN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PEMRKKFDDGEDPLDAESQQGGGGNPFHRSWNSWQGFNPFSSGGPFRFKFHFN
              490       500       510       520       530   

>>XP_011519407 (OMIM: 601184,616192) PREDICTED: dnaJ hom  (450 aa)
 initn: 2481 init1: 2481 opt: 2506  Z-score: 2092.0  bits: 396.5 E(85289): 8.7e-110
Smith-Waterman score: 2714; 93.6% identity (93.6% similar) in 450 aa overlap (84-504:1-450)

            60        70        80        90       100       110   
pF1KB3 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH
                                     ::::::::::::::::::::::::::::::
XP_011                               MGKSKAALPDLTKVIQLKMDFTAARLQRGH
                                             10        20        30

           120       130                                    140    
pF1KB3 LLLKQGKLDEAEDDFKKV-----------------------------LKSNPSENEEKEA
       ::::::::::::::::::                             :::::::::::::
XP_011 LLLKQGKLDEAEDDFKKVVFPVPSLLGLQRSLLDDLYLLFWFFLMKKLKSNPSENEEKEA
               40        50        60        70        80        90

          150       160       170       180       190       200    
pF1KB3 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP
              100       110       120       130       140       150

          210       220       230       240       250       260    
pF1KB3 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ
              160       170       180       190       200       210

          270       280       290       300       310       320    
pF1KB3 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE
              220       230       240       250       260       270

          330       340       350       360       370       380    
pF1KB3 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQ
              280       290       300       310       320       330

          390       400       410       420       430       440    
pF1KB3 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA
              340       350       360       370       380       390

          450       460       470       480       490       500    
pF1KB3 AKEVLSDPEMRKKFDDGEDPLDAESQQGGGGNPFHRSWNSWQGFNPFSSGGPFRFKFHFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKEVLSDPEMRKKFDDGEDPLDAESQQGGGGNPFHRSWNSWQGFNPFSSGGPFRFKFHFN
              400       410       420       430       440       450

>>XP_016876164 (OMIM: 601184,616192) PREDICTED: dnaJ hom  (383 aa)
 initn: 2503 init1: 2503 opt: 2503  Z-score: 2090.4  bits: 395.9 E(85289): 1.1e-109
Smith-Waterman score: 2503; 100.0% identity (100.0% similar) in 377 aa overlap (128-504:7-383)

       100       110       120       130       140       150       
pF1KB3 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL
                                     ::::::::::::::::::::::::::::::
XP_016                         MCFLHFFKKVLKSNPSENEEKEAQSQLIKSDEMQRL
                                       10        20        30      

       160       170       180       190       200       210       
pF1KB3 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL
         40        50        60        70        80        90      

       220       230       240       250       260       270       
pF1KB3 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE
        100       110       120       130       140       150      

       280       290       300       310       320       330       
pF1KB3 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP
        160       170       180       190       200       210      

       340       350       360       370       380       390       
pF1KB3 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK
        220       230       240       250       260       270      

       400       410       420       430       440       450       
pF1KB3 ILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK
        280       290       300       310       320       330      

       460       470       480       490       500    
pF1KB3 FDDGEDPLDAESQQGGGGNPFHRSWNSWQGFNPFSSGGPFRFKFHFN
       :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FDDGEDPLDAESQQGGGGNPFHRSWNSWQGFNPFSSGGPFRFKFHFN
        340       350       360       370       380   

>>NP_003306 (OMIM: 601964) dnaJ homolog subfamily C memb  (494 aa)
 initn: 323 init1: 187 opt: 638  Z-score: 543.1  bits: 110.0 E(85289): 1.6e-23
Smith-Waterman score: 638; 28.2% identity (62.8% similar) in 479 aa overlap (36-503:27-493)

          10        20        30        40        50        60     
pF1KB3 SVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQFHAAVD
                                     ..:   : :.   :  .  .: . .  :.:
NP_003     MAAAAECDVVMAATEPELLDDQEAKREAETFKEQGNAYYAKKDYNEAYNYYTKAID
                   10        20        30        40        50      

          70        80        90       100       110       120     
pF1KB3 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAE
         : :   :  ::.... .:. . :: :  . ..:  .:. ..:..:.  :. :.   : 
NP_003 MCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAAC
         60        70        80        90       100       110      

         130       140       150       160       170       180     
pF1KB3 DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV
        .:...:.    .... .::... ... ... .. : . : . :.  ..  .:. ::   
NP_003 RSFQRALEL---DHKNAQAQQEFKNANAVMEYEKIAETDFEKRDFRKVVFCMDRALEFAP
        120          130       140       150       160       170   

         190       200       210       220        230       240    
pF1KB3 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFY-KISTLYYQLGDHELSLSE
          ... :.:::.   :.  .: :  .   .. . :..:.: .   :::.    : ... 
NP_003 ACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYE-DCIEKAVQF
           180       190       200       210       220        230  

          250        260       270       280       290       300   
pF1KB3 VRECLKLDQDHKR-CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE
         . :..  ::.. :.:  ...: :.   :.... ...: :  :   :  ..  .:.   
NP_003 FVQALRMAPDHEKACIAC-RNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPN---
            240       250        260       270       280           

           310           320       330       340       350         
pF1KB3 YTVRSKERI-CH---CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEA
        ..... .. :.     :: .:  .::. :.......   ..:   ::. :.  :.:.::
NP_003 -NIKTNAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEA
       290       300       310       320       330       340       

     360       370       380       390       400       410         
pF1KB3 IQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLAL
       ..::: . . .:. .. .. :..::  ::.:...:::::::: .::...:: ::::: ::
NP_003 VRDYEKVYQ-TEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRAL
       350        360       370       380       390       400      

     420         430       440       450       460       470       
pF1KB3 QWHPDNFQ--NEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQGGGGNP
       . :::  .  . : .:. :::: ... :  .::::. . ..:.:.: :: :... :  .:
NP_003 MHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQD-LDEEGMNMGDFDP
        410       420       430       440       450        460     

          480       490       500    
pF1KB3 ---FHRSWNSWQGFNPFSSGGPFRFKFHFN
          :.  ...  ::. : ..::  : :.: 
NP_003 NNIFKAFFGGPGGFS-FEASGPGNFFFQFG
         470       480        490    

>>XP_011523469 (OMIM: 601964) PREDICTED: dnaJ homolog su  (438 aa)
 initn: 323 init1: 187 opt: 609  Z-score: 519.8  bits: 105.5 E(85289): 3.3e-22
Smith-Waterman score: 609; 28.8% identity (64.1% similar) in 448 aa overlap (68-503:3-437)

        40        50        60        70        80        90       
pF1KB3 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV
                                     : :   :  ::.... .:. . :: :  . 
XP_011                             MCPKNASYYGNRAATLMMLGRFREALGDAQQS
                                           10        20        30  

       100       110       120       130       140       150       
pF1KB3 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL
       ..:  .:. ..:..:.  :. :.   :  .:...:.    .... .::... ... ... 
XP_011 VRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALEL---DHKNAQAQQEFKNANAVMEY
             40        50        60           70        80         

       160       170       180       190       200       210       
pF1KB3 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL
       .. : . : . :.  ..  .:. ::      ... :.:::.   :.  .: :  .   ..
XP_011 EKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRM
      90       100       110       120       130       140         

       220        230        240       250        260       270    
pF1KB3 KNDNTEAFY-KISTLYYQLGDH-ELSLSEVRECLKLDQDHKR-CFAHYKQVKKLNKLIES
        . :..:.: .   :::.  :  : ...   . :..  ::.. :.:  ...: :.   :.
XP_011 DSTNADALYVRGLCLYYE--DCIEKAVQFFVQALRMAPDHEKACIAC-RNAKALKAKKED
     150       160         170       180       190        200      

          280       290       300       310           320       330
pF1KB3 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERI-CH---CFSKDEKPVEAIRVCS
       ... ...: :  :   :  ..  .:.    ..... .. :.     :: .:  .::. :.
XP_011 GNKAFKEGNYKLAYELYTEALGIDPN----NIKTNAKLYCNRGTVNSKLRKLDDAIEDCT
        210       220       230           240       250       260  

              340       350       360       370       380       390
pF1KB3 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS
       ......   ..:   ::. :.  :.:.::..::: . . .:. .. .. :..::  ::.:
XP_011 NAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ-TEKTKEHKQLLKNAQLELKKS
            270       280       290       300        310       320 

              400       410       420         430       440        
pF1KB3 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ--NEEEKKKAEKKFIDIAAAKEV
       ...:::::::: .::...:: ::::: ::. :::  .  . : .:. :::: ... :  .
XP_011 KRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTI
             330       340       350       360       370       380 

      450       460       470          480       490       500    
pF1KB3 LSDPEMRKKFDDGEDPLDAESQQGGGGNP---FHRSWNSWQGFNPFSSGGPFRFKFHFN
       ::::. . ..:.:.: :: :... :  .:   :.  ...  ::. : ..::  : :.: 
XP_011 LSDPKKKTRYDSGQD-LDEEGMNMGDFDPNNIFKAFFGGPGGFS-FEASGPGNFFFQFG
             390        400       410       420        430        

>>XP_011523471 (OMIM: 601964) PREDICTED: dnaJ homolog su  (438 aa)
 initn: 323 init1: 187 opt: 609  Z-score: 519.8  bits: 105.5 E(85289): 3.3e-22
Smith-Waterman score: 609; 28.8% identity (64.1% similar) in 448 aa overlap (68-503:3-437)

        40        50        60        70        80        90       
pF1KB3 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV
                                     : :   :  ::.... .:. . :: :  . 
XP_011                             MCPKNASYYGNRAATLMMLGRFREALGDAQQS
                                           10        20        30  

       100       110       120       130       140       150       
pF1KB3 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL
       ..:  .:. ..:..:.  :. :.   :  .:...:.    .... .::... ... ... 
XP_011 VRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALEL---DHKNAQAQQEFKNANAVMEY
             40        50        60           70        80         

       160       170       180       190       200       210       
pF1KB3 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL
       .. : . : . :.  ..  .:. ::      ... :.:::.   :.  .: :  .   ..
XP_011 EKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRM
      90       100       110       120       130       140         

       220        230        240       250        260       270    
pF1KB3 KNDNTEAFY-KISTLYYQLGDH-ELSLSEVRECLKLDQDHKR-CFAHYKQVKKLNKLIES
        . :..:.: .   :::.  :  : ...   . :..  ::.. :.:  ...: :.   :.
XP_011 DSTNADALYVRGLCLYYE--DCIEKAVQFFVQALRMAPDHEKACIAC-RNAKALKAKKED
     150       160         170       180       190        200      

          280       290       300       310           320       330
pF1KB3 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERI-CH---CFSKDEKPVEAIRVCS
       ... ...: :  :   :  ..  .:.    ..... .. :.     :: .:  .::. :.
XP_011 GNKAFKEGNYKLAYELYTEALGIDPN----NIKTNAKLYCNRGTVNSKLRKLDDAIEDCT
        210       220       230           240       250       260  

              340       350       360       370       380       390
pF1KB3 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS
       ......   ..:   ::. :.  :.:.::..::: . . .:. .. .. :..::  ::.:
XP_011 NAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ-TEKTKEHKQLLKNAQLELKKS
            270       280       290       300        310       320 

              400       410       420         430       440        
pF1KB3 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ--NEEEKKKAEKKFIDIAAAKEV
       ...:::::::: .::...:: ::::: ::. :::  .  . : .:. :::: ... :  .
XP_011 KRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTI
             330       340       350       360       370       380 

      450       460       470          480       490       500    
pF1KB3 LSDPEMRKKFDDGEDPLDAESQQGGGGNP---FHRSWNSWQGFNPFSSGGPFRFKFHFN
       ::::. . ..:.:.: :: :... :  .:   :.  ...  ::. : ..::  : :.: 
XP_011 LSDPKKKTRYDSGQD-LDEEGMNMGDFDPNNIFKAFFGGPGGFS-FEASGPGNFFFQFG
             390        400       410       420        430        

>>XP_011523470 (OMIM: 601964) PREDICTED: dnaJ homolog su  (438 aa)
 initn: 323 init1: 187 opt: 609  Z-score: 519.8  bits: 105.5 E(85289): 3.3e-22
Smith-Waterman score: 609; 28.8% identity (64.1% similar) in 448 aa overlap (68-503:3-437)

        40        50        60        70        80        90       
pF1KB3 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV
                                     : :   :  ::.... .:. . :: :  . 
XP_011                             MCPKNASYYGNRAATLMMLGRFREALGDAQQS
                                           10        20        30  

       100       110       120       130       140       150       
pF1KB3 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL
       ..:  .:. ..:..:.  :. :.   :  .:...:.    .... .::... ... ... 
XP_011 VRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALEL---DHKNAQAQQEFKNANAVMEY
             40        50        60           70        80         

       160       170       180       190       200       210       
pF1KB3 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL
       .. : . : . :.  ..  .:. ::      ... :.:::.   :.  .: :  .   ..
XP_011 EKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRM
      90       100       110       120       130       140         

       220        230        240       250        260       270    
pF1KB3 KNDNTEAFY-KISTLYYQLGDH-ELSLSEVRECLKLDQDHKR-CFAHYKQVKKLNKLIES
        . :..:.: .   :::.  :  : ...   . :..  ::.. :.:  ...: :.   :.
XP_011 DSTNADALYVRGLCLYYE--DCIEKAVQFFVQALRMAPDHEKACIAC-RNAKALKAKKED
     150       160         170       180       190        200      

          280       290       300       310           320       330
pF1KB3 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERI-CH---CFSKDEKPVEAIRVCS
       ... ...: :  :   :  ..  .:.    ..... .. :.     :: .:  .::. :.
XP_011 GNKAFKEGNYKLAYELYTEALGIDPN----NIKTNAKLYCNRGTVNSKLRKLDDAIEDCT
        210       220       230           240       250       260  

              340       350       360       370       380       390
pF1KB3 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS
       ......   ..:   ::. :.  :.:.::..::: . . .:. .. .. :..::  ::.:
XP_011 NAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ-TEKTKEHKQLLKNAQLELKKS
            270       280       290       300        310       320 

              400       410       420         430       440        
pF1KB3 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ--NEEEKKKAEKKFIDIAAAKEV
       ...:::::::: .::...:: ::::: ::. :::  .  . : .:. :::: ... :  .
XP_011 KRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTI
             330       340       350       360       370       380 

      450       460       470          480       490       500    
pF1KB3 LSDPEMRKKFDDGEDPLDAESQQGGGGNP---FHRSWNSWQGFNPFSSGGPFRFKFHFN
       ::::. . ..:.:.: :: :... :  .:   :.  ...  ::. : ..::  : :.: 
XP_011 LSDPKKKTRYDSGQD-LDEEGMNMGDFDPNNIFKAFFGGPGGFS-FEASGPGNFFFQFG
             390        400       410       420        430        

>>NP_001138238 (OMIM: 601964) dnaJ homolog subfamily C m  (438 aa)
 initn: 323 init1: 187 opt: 609  Z-score: 519.8  bits: 105.5 E(85289): 3.3e-22
Smith-Waterman score: 609; 28.8% identity (64.1% similar) in 448 aa overlap (68-503:3-437)

        40        50        60        70        80        90       
pF1KB3 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV
                                     : :   :  ::.... .:. . :: :  . 
NP_001                             MCPKNASYYGNRAATLMMLGRFREALGDAQQS
                                           10        20        30  

       100       110       120       130       140       150       
pF1KB3 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL
       ..:  .:. ..:..:.  :. :.   :  .:...:.    .... .::... ... ... 
NP_001 VRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALEL---DHKNAQAQQEFKNANAVMEY
             40        50        60           70        80         

       160       170       180       190       200       210       
pF1KB3 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL
       .. : . : . :.  ..  .:. ::      ... :.:::.   :.  .: :  .   ..
NP_001 EKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRM
      90       100       110       120       130       140         

       220        230        240       250        260       270    
pF1KB3 KNDNTEAFY-KISTLYYQLGDH-ELSLSEVRECLKLDQDHKR-CFAHYKQVKKLNKLIES
        . :..:.: .   :::.  :  : ...   . :..  ::.. :.:  ...: :.   :.
NP_001 DSTNADALYVRGLCLYYE--DCIEKAVQFFVQALRMAPDHEKACIAC-RNAKALKAKKED
     150       160         170       180       190        200      

          280       290       300       310           320       330
pF1KB3 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERI-CH---CFSKDEKPVEAIRVCS
       ... ...: :  :   :  ..  .:.    ..... .. :.     :: .:  .::. :.
NP_001 GNKAFKEGNYKLAYELYTEALGIDPN----NIKTNAKLYCNRGTVNSKLRKLDDAIEDCT
        210       220       230           240       250       260  

              340       350       360       370       380       390
pF1KB3 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS
       ......   ..:   ::. :.  :.:.::..::: . . .:. .. .. :..::  ::.:
NP_001 NAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ-TEKTKEHKQLLKNAQLELKKS
            270       280       290       300        310       320 

              400       410       420         430       440        
pF1KB3 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ--NEEEKKKAEKKFIDIAAAKEV
       ...:::::::: .::...:: ::::: ::. :::  .  . : .:. :::: ... :  .
NP_001 KRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTI
             330       340       350       360       370       380 

      450       460       470          480       490       500    
pF1KB3 LSDPEMRKKFDDGEDPLDAESQQGGGGNP---FHRSWNSWQGFNPFSSGGPFRFKFHFN
       ::::. . ..:.:.: :: :... :  .:   :.  ...  ::. : ..::  : :.: 
NP_001 LSDPKKKTRYDSGQD-LDEEGMNMGDFDPNNIFKAFFGGPGGFS-FEASGPGNFFFQFG
             390        400       410       420        430        




504 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 13:55:26 2016 done: Thu Nov  3 13:55:28 2016
 Total Scan time:  7.930 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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