GENSCAN 1.0	Date run:  3-Nov-116	Time: 13:39:04

Sequence gi568815575r:54346145_54595432 : 249288 bp : 45.65% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  11711  11795   85  1  1   37   71   124 0.699   4.62
 1.02 Intr +  12211  12321  111  2  0  110   25    61 0.097   2.35
 1.03 Intr +  23426  23609  184  0  1   84   82    63 0.620   4.15
 1.04 Intr +  24337  24498  162  1  0   80   69    38 0.352   0.19
 1.05 Intr +  62197  62340  144  1  0   63   37    87 0.017   0.50
 1.06 Intr +  81377  81485  109  2  1  138   66    72 0.541  10.29
 1.07 Intr +  94546  94636   91  0  1   48  101   100 0.711   6.87
 1.08 Intr +  97256  97347   92  0  2   79   99   136 0.999  13.51
 1.09 Intr +  97864  98040  177  0  0   46   57   127 0.724   5.52
 1.10 Term +  98272  98406  135  0  0  110   48    99 0.996   6.12
 1.11 PlyA +  99130  99135    6                               1.05

 2.19 PlyA -  99785  99780    6                              -0.45
 2.18 Term - 100270  99965  306  1  0   91   44   177 0.998   8.72
 2.17 Intr - 101310 101167  144  0  0   87   85   167 0.997  16.78
 2.16 Intr - 102823 102662  162  1  0   82   94   137 0.996  13.87
 2.15 Intr - 103124 102999  126  2  0  102   84   178 0.999  19.68
 2.14 Intr - 103616 103515  102  2  0  125   63    86 0.999  10.17
 2.13 Intr - 104157 104127   31  2  1   52   92    31 0.773  -1.97
 2.12 Intr - 109383 109304   80  0  2   98   80    83 0.971   6.85
 2.11 Intr - 109640 109455  186  2  0   74   22   193 0.502  11.19
 2.10 Intr - 110222 110076  147  2  0   75   94   223 0.999  22.03
 2.09 Intr - 110423 110365   59  0  2   97  101   142 0.934  15.00
 2.08 Intr - 119445 119307  139  0  1  103   87   163 0.995  17.74
 2.07 Intr - 119708 119552  157  1  1   64  111   271 0.996  27.01
 2.06 Intr - 121788 121640  149  0  2  119   77   269 0.999  27.93
 2.05 Intr - 122732 122643   90  2  0   72  109    91 0.962   9.79
 2.04 Intr - 124313 123872  442  1  1   56   69   515 0.906  39.86
 2.03 Intr - 124616 124439  178  0  1  117  113   131 0.999  17.48
 2.02 Intr - 125343 125170  174  1  0  123  110    95 0.997  15.11
 2.01 Init - 149288 148982  307  2  1   80  105   257 0.721  24.06
 2.00 Prom - 170854 170815   40                              -3.96

 3.00 Prom + 173303 173342   40                              -5.06
 3.01 Init + 184971 185020   50  2  2   84   46    66 0.586   2.42
 3.02 Intr + 192219 192244   26  0  2   83   83    23 0.572  -1.03
 3.03 Intr + 192896 192957   62  0  2  125  110    32 0.989   7.55
 3.04 Intr + 193991 194098  108  1  0   44   94    79 0.957   4.58
 3.05 Intr + 195129 195245  117  2  0   40  116   135 0.997  12.16
 3.06 Intr + 196811 196894   84  1  0  139   87    87 0.999  13.72
 3.07 Intr + 197063 197198  136  1  1  143   60   143 0.994  17.14
 3.08 Intr + 198079 198182  104  2  2   70  107    82 0.780   8.19
 3.09 Intr + 202085 202229  145  1  1  104   86   103 0.998  11.56
 3.10 Intr + 204819 204906   88  1  1  115   82    62 0.999   7.33
 3.11 Intr + 205424 205598  175  2  1   85   46   346 0.999  30.04
 3.12 Intr + 205688 205830  143  1  2  120   78    90 0.997  10.35
 3.13 Intr + 206148 206284  137  0  2   87  101   177 0.905  19.11
 3.14 Intr + 208421 208548  128  0  2   56   77   147 0.980  10.80
 3.15 Intr + 212292 212511  220  2  1  113   75   211 0.992  20.17
 3.16 Term + 214376 214458   83  0  2   79   37   152 0.804   7.06
 3.17 PlyA + 215016 215021    6                               1.05

 4.00 Prom + 215613 215652   40                              -2.06
 4.01 Init + 237237 237285   49  2  1   86   58    40 0.310  -0.09
 4.02 Term + 240872 241074  203  0  2   53   41   173 0.366   6.65
 4.03 PlyA + 242654 242659    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  94278  94358   81  2  0   77   82   125 0.988   9.77
S.002 Term - 230979 230791  189  0  0   70   42   125 0.877   3.55


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815575r:54346145_54595432|GENSCAN_predicted_peptide_1|429_aa
MSRAPLRVVCACARERLPASPPGQLRPVEKKKKKKSPSTHYFLAPHCPPLGLREPLNAVA
PLLGGVTLFLTLSNYYSEEGVPLPIVGHYGLYSVPWAEEMMDGHRNPCNIFCPGSSIALW
AFAYSTKAVPHVGIPLIGHISIALLPEYITRPLDTAQESVKIQTQWLSNQLAFFSSFPAN
RMTIQTNKQTKQKATIVGDDVEKLEPLYVAGGNVKWRSHCGKQFGFLNRYSYGSILLACK
ELKLMALKKQEAAMLLCTTYGDGHMIAVENGFGGVHSQEKAKWLGGAVEDYFMRNADLEL
DEVEDFLGELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALREMASCITQRKCKV
TATALKTARETDEDEDDVDSVEEMEVTATNDGAATDGVCPQPEPSDPDAQTIKEEDIVED
GWTIVRRKK

>gi568815575r:54346145_54595432|GENSCAN_predicted_CDS_1|1290_bp
atgtctcgagctccgctccgcgtcgtgtgcgcttgcgcgcgcgagcgtctccccgcgagc
ccaccgggccagctacggccggtagagaagaagaagaagaagaaaagtccaagcacacac
tacttcctagccccccactgcccacccttgggtctccgcgagcctctgaatgctgtagcg
ccgctgttaggaggtgtgaccttgtttctgactctatcaaactactactcagaggagggt
gtccctctgcccattgttgggcattatgggctgtacagtgttccttgggctgaagaaatg
atggatggccatcgaaatccatgcaatatcttctgtcctggttcttccatagcactctgg
gcatttgcatattctaccaaggctgtgccccatgtgggcatccccttaataggccacatt
tccattgccctcctgcctgagtatataaccaggccattggacactgcccaggagtcagta
aaaatccaaacacagtggttgtctaatcagctggcattcttctcctcctttcctgctaac
aggatgaccatacaaacaaacaaacaaacaaaacagaaagcaacaattgttggtgatgat
gtggagaaactggaacccttgtacgttgctggtgggaacgtaaaatggcgcagccactgt
ggaaaacagtttgggttcctcaacagatatagctatggctccatcttgctagcatgcaaa
gaactcaaactgatggccttgaagaagcaagaagctgctatgctattgtgtactacctat
ggagatggccacatgatcgctgtggagaatggcttcgggggtgtgcacagccaggagaag
gccaagtggctggggggtgcagtggaggattacttcatgcgcaatgctgacttggagcta
gatgaggtggaagacttccttggagagctgttgaccaacgagtttgatacagttgtggaa
gacgggagtctgccccaggtgagccagcaactgcagaccatgttccaccacttccagagg
ggtgatggggctgctctgagggagatggcctcctgcatcactcagagaaaatgcaaggtc
acagccactgcacttaagacagctagagagactgatgaggatgaagatgatgtggacagt
gtggaagagatggaggtcacagctacgaatgatggggctgctacagatggggtctgcccc
cagcctgaaccctctgatccagacgctcagactattaaggaagaggatatagtggaagat
ggctggaccattgtccggagaaaaaaatga

>gi568815575r:54346145_54595432|GENSCAN_predicted_peptide_2|992_aa
MHGHRAPGGAGPSEPEHPATNPPGAAPPACADSDPGASEPGLLARRGSGSALGGPLDPQF
VGPSDTSLGAAPGHRVLPCGPSPQHHRALRFSYHLEGSQPRPGLHQGNRILVKSLSLDPG
QSLEPHPEGPQRLRSDPGPPTETPSQRPSPLKRAPGPKPQVPPKPSYLQMPRMPPPLEPI
PPPPSRPLPADPRVAKGLAPRAEASPSSAAVSSLIEKFEREPVIVASDRPVPGPSPGPPE
PVMLPQPTSQPPVPQLPEGEASRCLFLLAPGPRDGEKVPNRDSGIDSISSPSNSEETCFV
SDDGPPSHSLCPGPPALASVPVALADPHRPGSQEVDSDLEEEDDEEEEEEKDREIPVPLM
ERQESVELTVQQKVFHIANELLQTEKAYVSRLHLLDQVFCARLLEEARNRSSFPADVVHG
IFSNICSIYCFHQQFLLPELEKRMEEWDRYPRIGDILQKLAPFLKMYGEYVKNFDRAVEL
VNTWTERSTQFKVIIHEVQKEEACGNLTLQHHMLEPVQRIPRYELLLKDYLLKLPHGSPD
SKDAQKSLELIATAAEHSNAAIRKMERMHKLLKVYELLGGEEDIVSPTKELIKEGHILKL
SAKNGTTQDRYLILFNDRLLYCVPRLRLLGQKFSVRARIDVDGMEVSIQEVGNGNLEWGI
GVGRNKDAGFDPESVCLKESSNLNLPRTFLVSGKQRSLELQARTEEEKKDWVQAINSTLL
KHEQTLETFKLLNSTNREDEDTPPNSPNVDLGKRAPTPIREKEVTMCMRCQEPFNSITKR
RHHCKACGHVVCGKCSEFRARLVYDNNRSNRVCTDCYVALHGVPGSSPACSQHTPQRRRS
ILEKQASVAAENSVICSFLHYMEKGGKGWHKAWFVVPENEPLVLYIYGAPQDVKAQRSLP
LIGFEVGPPEAGERPDRRHVFKITQSHLSWYFSPETEELQRRWMAVLGRAGRGDTFCPGP
TLSEDREMEEAPVAALGATAEPPESPQTRDKT

>gi568815575r:54346145_54595432|GENSCAN_predicted_CDS_2|2979_bp
atgcatggccaccgagccccggggggcgccgggccttcggagcccgaacacccggccacg
aacccgccgggcgccgctccgccggcctgtgccgactcggaccctggagcctcggaaccc
ggactgctggcgcgcaggggctcaggttcggctcttggcggcccactggatccccagttt
gtcggaccctcggacaccagcctgggcgctgctccaggccaccgggtcttgccctgcggt
cccagtccacagcaccaccgggccctgcgcttctcttaccacctggagggctcgcagcct
cggcctgggctgcaccagggaaaccggatcctggttaaaagtttgtcccttgaccctggc
caaagcctagagcctcatccagaaggtccccagcggcttcgctcagacccaggtcccccg
actgaaacccctagccagcgtccttcaccactgaagcgggcaccgggcccgaagccacag
gtgcccccaaagcccagctacctgcagatgccccggatgccccccccactggagcccatc
ccccctccaccatcacgcccactgcctgccgacccccgagtggccaagggcctggctccc
agggcagaggccagccccagttctgcagcagtatcctcactgattgagaagtttgaaaga
gagcctgtgattgtcgcctcggatagaccagtccctggccccagcccaggtcccccagag
ccagtcatgttgccacagccaacctcgcagccaccagtgccccagctccccgagggtgag
gcctcccgctgcctgtttctgctggctcctgggccccgggacggtgagaaggtgcccaac
cgggacagcggcattgatagcatcagctcgccatccaacagcgaggagacctgcttcgtc
agtgatgacgggccccccagccacagcctctgccctgggccccctgccctggctagtgtg
cctgttgccttggccgacccccaccggcctggctcccaagaggttgacagtgacctggag
gaggaggacgacgaggaggaggaggaagagaaggacagagaaatcccagtgcccctgatg
gagagacaggagtctgtggagttgactgtgcagcaaaaggtgtttcacattgccaatgag
ctcctgcaaactgagaaggcctacgtttccaggctccatctcctggatcaggtgttctgt
gcccggctgctggaagaagctcggaaccgcagttccttcccggccgacgttgtccacggc
atcttctctaacatctgctccatctattgcttccaccagcagttcctgctgcctgagcta
gagaagcgcatggaggaatgggaccgctatccacgcattggagacatcctgcagaaactg
gcccccttcctcaagatgtatggtgagtatgtgaagaactttgaccgggccgtggagctg
gtcaacacctggacagagcgctccacccagtttaaagtcatcatccatgaggtgcagaag
gaggaagcctgtggcaacctgacattgcagcaccacatgctggagcctgtgcagcgcatc
ccccgctatgagcttcttctcaaggactatctgttaaagctgccccatggctccccggac
agcaaggatgcccaaaagtctctggagctgatcgccacagcagcagagcactcgaatgct
gccatccgcaaaatggagcgaatgcataagctgctgaaggtatatgagctgttagggggc
gaggaggacattgtcagccccaccaaagagctcataaaagaaggccacatccttaagctg
tcagcaaagaatgggaccactcaagaccgatacctcatactattcaacgaccgcctcctt
tactgcgtgcccaggctgcggctccttggccagaagtttagcgtgcgggcacgcattgat
gtagatggcatggaggtaagcatccaagaggtgggaaatgggaacttggagtggggcatt
ggtgttgggaggaacaaagatgctggctttgaccccgagtctgtgtgtctaaaggagagc
tccaacctcaatctgcctcgaaccttcctggtgtcaggaaagcagcgctccctcgagctc
caggccaggactgaggaggagaagaaagactgggtccaggccatcaactccaccctcctg
aagcatgaacagacgctggagactttcaaactgttgaactcaacaaacagggaagatgaa
gacaccccacccaactctccaaacgtggatcttgggaagcgggcacctacgcccatccgg
gaaaaggaagtcaccatgtgcatgcgctgccaggagcccttcaattctatcaccaaacgc
aggcaccactgcaaggcctgcgggcatgtggtttgtgggaagtgctccgagttccgggcc
cgcctcgtctatgacaacaaccgctccaaccgtgtgtgcactgattgctatgtggccttg
cacggggtgcctgggagcagtccagcctgcagccagcatacaccccagcgccggaggtcc
atcctggagaaacaggcctcagtggctgcagagaacagcgtcatctgcagcttcctgcac
tacatggagaagggtggcaaaggatggcacaaggcatggttcgtggtccctgaaaatgaa
cccttggtgctgtatatctacggagcccctcaggatgtgaaagcccagcgcagcctgccc
ctcattggcttcgaggtgggaccgcccgaggcaggggagcggcctgacagaaggcatgtc
ttcaagatcacccagagccacctcagctggtacttcagccctgagacagaggaactacag
cgacgctggatggctgtgcttggccgggcgggccgaggggacacgttctgcccggggccc
acactgtctgaggacagggagatggaggaggcaccggtggctgctttaggagccactgct
gaaccccccgaatccccccagacccgagacaagacctag

>gi568815575r:54346145_54595432|GENSCAN_predicted_peptide_3|601_aa
MLRSKQEQTLIHEETVRNSLSPYEGENKKPGEGSKGHKKISWPYPQPAKQNGKKATSKVP
SAPHFVHPNDHANREAELKKKWVEEMREKQQAAREQERQKRRTIESYCQDVLRRQEEFEH
KEEVLQELNMFPQLDDEATRKAYYKEFRKVVEYSDVILEVLDARDPLGCRCFQMEEAVLR
AQGNKKLVLVLNKIDLVPKEVVEKWLDYLRNELPTVAFKASTQHQVKNLNRCSVPVDQAS
ESLLKSKACFGAENLMRVLGNYCRLGEVRTHIRVGVVGLPNVGKSSLINSLKRSRACSVG
AVPGITKFMQEVYLDKFIRLLDAPGIVPGPNSEVGTILRNCVHVQKLADPVTPVETILQR
CNLEEISNYYGVSGFQTTEHFLTAVAHRLGKKKKGGLYSQEQAAKAVLADWVSGKISFYI
PPPATHTLPTHLSAEIVKEMTEVFDIEDTEQANEDTMECLATGESDELLGDTDPLEMEIK
LLHSPMTKIADAIENKTTVYKIGDLTGYCTNPNRHQMGWAKRNVDHRPKSNSMVDVCSVD
RRSVLQRIMETDPLQQGQALASALKNKKKMQKRADKIASKLSDSMMSALDLSGNADDGVG
D

>gi568815575r:54346145_54595432|GENSCAN_predicted_CDS_3|1806_bp
atgcttcgaagcaaacaggaacagaccttaatccatgaagagacagtcaggaattccttg
agcccctatgaaggtgaaaataaaaagccaggtgaaggttccaagggccacaagaagata
agttggccctaccctcagcctgcaaagcaaaatgggaagaaagcaacctccaaagtgccc
tctgcacctcattttgttcaccccaatgatcatgccaatcgagaggctgaattaaagaag
aagtgggttgaggagatgagggagaagcagcaagccgcccgggagcaagaaagacaaaaa
cgcaggaccattgagagctactgtcaggatgtcctaagacgccaggaggagtttgagcat
aaggaggaagttttgcaggaattaaatatgtttcctcagctggatgacgaggccacgagg
aaggcttattacaaggagttccgtaaggtggtggaatactctgatgtgattctggaagtc
ctggatgccagagacccattaggctgccgctgcttccaaatggaggaggctgtcctgcga
gcacaaggcaacaagaagctggtcctggtcttgaacaagattgacctggtccccaaggag
gttgtggagaaatggctggattaccttcggaatgagttgccaaccgtggctttcaaggcc
agtacccagcatcaggtcaaaaacctgaatcgttgcagtgtgccagtagatcaggcctct
gagtcactgctgaaaagcaaagcctgctttggagctgaaaacctcatgagggttctgggg
aactattgccgccttggtgaagtgcgcacccacattcgtgtgggtgttgtgggtcttccc
aatgttgggaagagcagcctgatcaatagcctgaagcgcagccgcgcatgcagcgtggga
gctgttcctggaattaccaaattcatgcaggaggtctacctggacaagttcatccggctc
ttggatgctccaggcattgtcccagggcccaactcagaggtgggcaccatcctgcgtaac
tgcgtccacgtgcagaagctggcagaccctgtgaccccagtggagaccatcctgcagcgc
tgcaacctggaggagatttccaactattatggcgtctctgggttccagaccactgagcac
tttctgacggcagtggcccaccgtttggggaagaagaagaagggaggcttatatagtcag
gaacaggcggccaaagctgtcctagctgactgggtgagcgggaagatcagcttctatata
ccaccaccagccactcacactctgcccacccatctcagtgctgagatcgttaaggaaatg
accgaggtctttgacatcgaggatactgagcaggccaatgaagacaccatggaatgcttg
gccaccggagaatctgatgagctgttgggtgacacggacccacttgaaatggagatcaag
ttgctccattctccgatgacgaaaatagcagatgccattgaaaataaaaccaccgtgtat
aagattggagatctcactgggtattgcaccaatccgaaccgtcatcagatggggtgggct
aaacgcaatgtggaccaccgccctaagagcaacagtatggtggatgtctgctcagtggac
cgccgctcagtgctgcagaggatcatggagacggaccccctgcaacagggccaggctctg
gcatctgccctgaaaaataagaagaagatgcagaaacgtgcagataaaatcgccagcaag
ctgtctgattccatgatgtctgctctcgacctctctggcaatgctgatgatggtgttggt
gactaa

>gi568815575r:54346145_54595432|GENSCAN_predicted_peptide_4|83_aa
MGFHHVSQACLELLTSEGFPTTSIAITHAMNTAQRFENLPTYLVHCCHSWYLSKPSGGQE
SACLDTLTLVAAYAPMEPKDRHA

>gi568815575r:54346145_54595432|GENSCAN_predicted_CDS_4|252_bp
atggggtttcaccatgttagccaggcttgtctcgaactgctgacctcagagggttttccc
accacttcgattgctatcacccatgccatgaacactgcccaacggtttgagaacctgccc
acctacctggtccactgctgccattcctggtacctgagcaagccatctggaggtcaagag
tcagcctgcctggacacactaacactagtggcagcatatgctcccatggagcccaaggac
aggcatgcttag