Result of FASTA (omim) for pF1KB3512
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3512, 414 aa
  1>>>pF1KB3512 414 - 414 aa - 414 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7900+/-0.000531; mu= 13.0162+/- 0.034
 mean_var=265.8293+/-61.344, 0's: 0 Z-trim(116.1): 120  B-trim: 2902 in 2/49
 Lambda= 0.078663
 statistics sampled from 26905 (27068) to 26905 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.317), width:  16
 Scan time:  7.040

The best scores are:                                      opt bits E(85289)
XP_016856354 (OMIM: 605078,612069) PREDICTED: TAR  ( 414) 2826 334.5   3e-91
XP_016856353 (OMIM: 605078,612069) PREDICTED: TAR  ( 414) 2826 334.5   3e-91
XP_016856352 (OMIM: 605078,612069) PREDICTED: TAR  ( 414) 2826 334.5   3e-91
XP_016856357 (OMIM: 605078,612069) PREDICTED: TAR  ( 414) 2826 334.5   3e-91
XP_016856356 (OMIM: 605078,612069) PREDICTED: TAR  ( 414) 2826 334.5   3e-91
XP_016856355 (OMIM: 605078,612069) PREDICTED: TAR  ( 414) 2826 334.5   3e-91
NP_031401 (OMIM: 605078,612069) TAR DNA-binding pr ( 414) 2826 334.5   3e-91
NP_112556 (OMIM: 602688) heterogeneous nuclear rib ( 332)  417 60.9 5.3e-09
NP_112740 (OMIM: 607137,609115) heterogeneous nucl ( 420)  410 60.3   1e-08
NP_112738 (OMIM: 601324) heterogeneous nuclear rib ( 355)  408 60.0 1.1e-08
NP_004490 (OMIM: 602688) heterogeneous nuclear rib ( 285)  406 59.6 1.2e-08
XP_005249786 (OMIM: 600124,615422) PREDICTED: hete ( 353)  404 59.5 1.5e-08
NP_112533 (OMIM: 600124,615422) heterogeneous nucl ( 353)  404 59.5 1.5e-08
NP_112737 (OMIM: 601324) heterogeneous nuclear rib ( 336)  402 59.2 1.7e-08
XP_016867598 (OMIM: 600124,615422) PREDICTED: hete ( 341)  400 59.0 2.1e-08
NP_002128 (OMIM: 600124,615422) heterogeneous nucl ( 341)  400 59.0 2.1e-08
XP_016867599 (OMIM: 600124,615422) PREDICTED: hete ( 341)  400 59.0 2.1e-08
NP_001193929 (OMIM: 607137,609115) heterogeneous n ( 363)  391 58.0 4.3e-08
XP_016874740 (OMIM: 164017,615424,615426) PREDICTE ( 295)  388 57.6 4.9e-08
NP_002129 (OMIM: 601324) heterogeneous nuclear rib ( 306)  386 57.4 5.9e-08
NP_001003810 (OMIM: 601324) heterogeneous nuclear  ( 287)  380 56.6 9.1e-08
XP_011536665 (OMIM: 603328) PREDICTED: RNA-binding ( 332)  341 52.3 2.1e-06
XP_011536664 (OMIM: 603328) PREDICTED: RNA-binding ( 343)  324 50.4 8.2e-06
XP_006719466 (OMIM: 603328) PREDICTED: RNA-binding ( 351)  321 50.1   1e-05
NP_620412 (OMIM: 607897) RNA-binding protein Musas ( 328)  319 49.8 1.2e-05
NP_001309179 (OMIM: 607897) RNA-binding protein Mu ( 324)  317 49.6 1.4e-05
XP_005257072 (OMIM: 607897) PREDICTED: RNA-binding ( 346)  317 49.6 1.4e-05
XP_005257071 (OMIM: 607897) PREDICTED: RNA-binding ( 346)  317 49.6 1.4e-05
XP_011536663 (OMIM: 603328) PREDICTED: RNA-binding ( 362)  315 49.4 1.7e-05
NP_002433 (OMIM: 603328) RNA-binding protein Musas ( 362)  315 49.4 1.7e-05
NP_733839 (OMIM: 607897) RNA-binding protein Musas ( 251)  310 48.6 2.1e-05
NP_001309180 (OMIM: 607897) RNA-binding protein Mu ( 255)  304 47.9 3.4e-05
XP_016879637 (OMIM: 607897) PREDICTED: RNA-binding ( 295)  304 48.0 3.6e-05
XP_016881354 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446)  259 43.2  0.0016
XP_016881350 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447)  259 43.2  0.0016
XP_016881351 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447)  259 43.2  0.0016
NP_001020260 (OMIM: 612679) CUGBP Elav-like family ( 448)  259 43.2  0.0016
NP_005372 (OMIM: 164035) nucleolin [Homo sapiens]  ( 710)  262 43.9  0.0016
XP_016881341 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474)  259 43.2  0.0016
XP_016881339 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 475)  259 43.2  0.0016
XP_016881335 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 476)  259 43.2  0.0016
XP_011524389 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 494)  259 43.3  0.0016
XP_016881329 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 496)  259 43.3  0.0017
XP_016881352 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446)  258 43.1  0.0017
XP_016881353 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446)  258 43.1  0.0017
XP_016881349 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447)  258 43.1  0.0017
XP_016881346 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 454)  258 43.1  0.0017
XP_016881338 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 473)  258 43.1  0.0017
XP_016881340 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474)  258 43.1  0.0017
XP_016881337 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474)  258 43.1  0.0017


>>XP_016856354 (OMIM: 605078,612069) PREDICTED: TAR DNA-  (414 aa)
 initn: 2826 init1: 2826 opt: 2826  Z-score: 1759.2  bits: 334.5 E(85289): 3e-91
Smith-Waterman score: 2826; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)

               10        20        30        40        50        60
pF1KB3 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
              310       320       330       340       350       360

              370       380       390       400       410    
pF1KB3 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
              370       380       390       400       410    

>>XP_016856353 (OMIM: 605078,612069) PREDICTED: TAR DNA-  (414 aa)
 initn: 2826 init1: 2826 opt: 2826  Z-score: 1759.2  bits: 334.5 E(85289): 3e-91
Smith-Waterman score: 2826; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)

               10        20        30        40        50        60
pF1KB3 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
              310       320       330       340       350       360

              370       380       390       400       410    
pF1KB3 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
              370       380       390       400       410    

>>XP_016856352 (OMIM: 605078,612069) PREDICTED: TAR DNA-  (414 aa)
 initn: 2826 init1: 2826 opt: 2826  Z-score: 1759.2  bits: 334.5 E(85289): 3e-91
Smith-Waterman score: 2826; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)

               10        20        30        40        50        60
pF1KB3 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
              310       320       330       340       350       360

              370       380       390       400       410    
pF1KB3 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
              370       380       390       400       410    

>>XP_016856357 (OMIM: 605078,612069) PREDICTED: TAR DNA-  (414 aa)
 initn: 2826 init1: 2826 opt: 2826  Z-score: 1759.2  bits: 334.5 E(85289): 3e-91
Smith-Waterman score: 2826; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)

               10        20        30        40        50        60
pF1KB3 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
              310       320       330       340       350       360

              370       380       390       400       410    
pF1KB3 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
              370       380       390       400       410    

>>XP_016856356 (OMIM: 605078,612069) PREDICTED: TAR DNA-  (414 aa)
 initn: 2826 init1: 2826 opt: 2826  Z-score: 1759.2  bits: 334.5 E(85289): 3e-91
Smith-Waterman score: 2826; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)

               10        20        30        40        50        60
pF1KB3 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
              310       320       330       340       350       360

              370       380       390       400       410    
pF1KB3 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
              370       380       390       400       410    

>>XP_016856355 (OMIM: 605078,612069) PREDICTED: TAR DNA-  (414 aa)
 initn: 2826 init1: 2826 opt: 2826  Z-score: 1759.2  bits: 334.5 E(85289): 3e-91
Smith-Waterman score: 2826; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)

               10        20        30        40        50        60
pF1KB3 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
              310       320       330       340       350       360

              370       380       390       400       410    
pF1KB3 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
              370       380       390       400       410    

>>NP_031401 (OMIM: 605078,612069) TAR DNA-binding protei  (414 aa)
 initn: 2826 init1: 2826 opt: 2826  Z-score: 1759.2  bits: 334.5 E(85289): 3e-91
Smith-Waterman score: 2826; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)

               10        20        30        40        50        60
pF1KB3 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
              310       320       330       340       350       360

              370       380       390       400       410    
pF1KB3 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
              370       380       390       400       410    

>>NP_112556 (OMIM: 602688) heterogeneous nuclear ribonuc  (332 aa)
 initn: 395 init1: 195 opt: 417  Z-score: 282.6  bits: 60.9 E(85289): 5.3e-09
Smith-Waterman score: 435; 30.4% identity (60.9% similar) in 312 aa overlap (78-374:47-329)

        50        60        70        80        90       100       
pF1KB3 SQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLI
                                     : .....  : :  .: : .. . :   ..
NP_112 ENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGK---MF
         20        30        40        50        60        70      

       110       120       130       140       150       160       
pF1KB3 VLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR-H
       : :: : :...:::.::. ::::.   .: : .::.:.::::. : .  .  ::..:. :
NP_112 VGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEH
            80        90       100       110       120       130   

        170       180       190       200       210       220      
pF1KB3 MIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIP-KP
        .:::  : :  ..   . .:.  .:.:::  . . ::...::.:...:..  . .:  :
NP_112 RLDGRVIDPK--KAMAMKKDPV--KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDP
           140         150         160       170       180         

             230       240        250       260       270          
pF1KB3 ----FRAFAFVTFADDQIAQSLCGEDL-IIKGISVHISNAEPKHNSNRQLERSGRFG---
            :.:.:.:: ... ....  . .  ..: . .:. :.::.  ..:   ::  :   
NP_112 KLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRN
     190       200       210       220       230       240         

        280       290       300           310       320       330  
pF1KB3 -GNPGGFGNQGGFGNSRGGGAGLGN--NQGSNM--GGGMNFGAFSINPAMMAAAQAALQS
        :: :. :. :: :.:.. . : ::  ::: ..  : : ..:... .:            
NP_112 RGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSP------------
     250       260       270       280       290                   

            340       350       360       370       380       390  
pF1KB3 SWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIGWGSASNAG
        .:..:.        :: : . .::. .   .:  :. .:.:                  
NP_112 -YGYYGY--------GP-GYDYSQGSTNYGKSQRRGGHQNNYKPY               
        300                310       320       330                 

            400       410    
pF1KB3 SGSGFNGGFGSSMDSKSSGWGM

>>NP_112740 (OMIM: 607137,609115) heterogeneous nuclear   (420 aa)
 initn: 293 init1: 183 opt: 410  Z-score: 277.3  bits: 60.3 E(85289): 1e-08
Smith-Waterman score: 431; 29.3% identity (59.6% similar) in 317 aa overlap (85-392:129-410)

           60        70        80        90       100       110    
pF1KB3 RLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWK
                                     ..:   .: .....  :  . ... :: : 
NP_112 AAAAAATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWD
      100       110       120       130       140       150        

          120       130       140       150       160        170   
pF1KB3 TTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWC
       :...:: ::.: ::::.   .: :  ::.:.::::: : .  .  ::.  ..: .::.  
NP_112 TSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLI
      160       170       180       190       200       210        

           180       190       200       210       220             
pF1KB3 DCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIP-----KPFRA
       : :  .. .... :   .:::::  . : .:....:.:. .:.. .. .:     .  :.
NP_112 DPKRAKALKGKEPP---KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRG
      220       230          240       250       260       270     

      230        240       250       260         270       280     
pF1KB3 FAFVTFADDQ-IAQSLCGEDLIIKGISVHISNAEPK--HNSNRQLERSGRFGGNPGGFGN
       : :.:..:.. . . : ..   : . . .:. :.::  . ...: ...:: :.  :: :.
NP_112 FCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGR-GAAAGGRGG
         280       290       300       310       320        330    

         290       300       310       320       330       340     
pF1KB3 QGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQN
         :    :: : : . ::: :    ...: ..              :..:      ..::
NP_112 TRG----RGRGQGQNWNQGFNNYYDQGYGNYN--------------SAYG------GDQN
              340       350       360                           370

         350       360       370       380       390       400     
pF1KB3 QSGPSGNNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSM
        :: .: . .  :.    : ..:.:  .:::..:     .:.:: .:             
NP_112 YSGYGGYDYTGYNY---GNYGYGQGYADYSGQQST----YGKASRGGGNHQNNYQPY   
              380          390       400           410       420   

         410    
pF1KB3 DSKSSGWGM

>>NP_112738 (OMIM: 601324) heterogeneous nuclear ribonuc  (355 aa)
 initn: 328 init1: 205 opt: 408  Z-score: 276.8  bits: 60.0 E(85289): 1.1e-08
Smith-Waterman score: 409; 30.0% identity (61.7% similar) in 290 aa overlap (81-349:71-354)

               60        70        80        90       100          
pF1KB3 MRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSD---LI
                                     .: . ::  ..:. . ..:.    .   ..
NP_112 AGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMF
               50        60        70        80        90       100

       110       120       130       140       150       160       
pF1KB3 VLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR-H
       . :: : ::..:::.::: ::::.   .: :  ::.:.::::: : : :.  :::.:. :
NP_112 IGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEH
              110       120       130       140       150       160

        170       180       190       200       210       220      
pF1KB3 MIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIP---
        ..:.  : :  .. ... ::.  .:.:::  . :  :...::.:. .:.: .. .:   
NP_112 KLNGKVIDPKRAKAMKTK-EPV--KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN
              170        180         190       200       210       

             230       240       250          260       270        
pF1KB3 --KPFRAFAFVTFADDQIAQSLCGEDLIIKGIS---VHISNAEPKHNSNRQLERSGRF--
         .  :.: :.:: ... ....  .     :.:   .... .. ......:    : :  
NP_112 KTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAG
       220       230       240       250       260       270       

             280       290        300        310       320         
pF1KB3 -----GGNPGGFGNQGGFGNSRGGGAG-LG-NNQGSNMGGGMNFGAFSINPAMMAAAQAA
            ::.:.   ::: ..:  . : :  : :.:: .  ::... ..  :  .  .  . 
NP_112 RARGRGGGPSQNWNQG-YSNYWNQGYGNYGYNSQGYGGYGGYDYTGY--NNYYGYGDYSN
       280       290        300       310       320         330    

     330       340       350       360       370       380         
pF1KB3 LQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIGWGSAS
        ::..: ..  ...::.  :                                        
NP_112 QQSGYGKVSRRGGHQNSYKPY                                       
          340       350                                            




414 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 13:28:18 2016 done: Thu Nov  3 13:28:19 2016
 Total Scan time:  7.040 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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