Result of FASTA (omim) for pF1KB3481
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3481, 782 aa
  1>>>pF1KB3481 782 - 782 aa - 782 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9461+/-0.000401; mu= 18.3292+/- 0.025
 mean_var=93.3259+/-18.307, 0's: 0 Z-trim(113.5): 24  B-trim: 0 in 0/49
 Lambda= 0.132762
 statistics sampled from 22873 (22889) to 22873 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.609), E-opt: 0.2 (0.268), width:  16
 Scan time: 10.990

The best scores are:                                      opt bits E(85289)
NP_000113 (OMIM: 133510,610651,616390) TFIIH basal ( 782) 5187 1004.3       0
XP_011509096 (OMIM: 133510,610651,616390) PREDICTE ( 788) 5165 1000.1       0
NP_001290345 (OMIM: 133510,610651,616390) TFIIH ba ( 718) 4752 921.0       0
NP_001290347 (OMIM: 133510,610651,616390) TFIIH ba ( 718) 4752 921.0       0
XP_016859072 (OMIM: 133510,610651,616390) PREDICTE ( 630) 4161 807.8       0
XP_011509097 (OMIM: 133510,610651,616390) PREDICTE ( 636) 4139 803.6       0


>>NP_000113 (OMIM: 133510,610651,616390) TFIIH basal tra  (782 aa)
 initn: 5187 init1: 5187 opt: 5187  Z-score: 5369.5  bits: 1004.3 E(85289):    0
Smith-Waterman score: 5187; 100.0% identity (100.0% similar) in 782 aa overlap (1-782:1-782)

               10        20        30        40        50        60
pF1KB3 MGKRDRADRDKKKSRKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDEYGAKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MGKRDRADRDKKKSRKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDEYGAKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 YSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 KSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRND
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 SVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 CLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 CLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 WEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 WEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 FRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 FRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFY
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKVLAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKVLAAT
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 DLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRF
              730       740       750       760       770       780

         
pF1KB3 RK
       ::
NP_000 RK
         

>>XP_011509096 (OMIM: 133510,610651,616390) PREDICTED: T  (788 aa)
 initn: 3723 init1: 3723 opt: 5165  Z-score: 5346.7  bits: 1000.1 E(85289):    0
Smith-Waterman score: 5165; 99.2% identity (99.2% similar) in 788 aa overlap (1-782:1-788)

               10        20        30        40        50        60
pF1KB3 MGKRDRADRDKKKSRKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDEYGAKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGKRDRADRDKKKSRKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVDEYGAKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 YSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESC
              130       140       150       160       170       180

              190       200       210             220       230    
pF1KB3 HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSA------ISKTAESSGGPSTSR
       :::::::::::::::::::::::::::::::::::::::      :::::::::::::::
XP_011 HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAHLPLSQISKTAESSGGPSTSR
              190       200       210       220       230       240

          240       250       260       270       280       290    
pF1KB3 VTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAE
              250       260       270       280       290       300

          300       310       320       330       340       350    
pF1KB3 YDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAA
              310       320       330       340       350       360

          360       370       380       390       400       410    
pF1KB3 CTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLG
              370       380       390       400       410       420

          420       430       440       450       460       470    
pF1KB3 HTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVRED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVRED
              430       440       450       460       470       480

          480       490       500       510       520       530    
pF1KB3 DKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLY
              490       500       510       520       530       540

          540       550       560       570       580       590    
pF1KB3 TMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQ
              550       560       570       580       590       600

          600       610       620       630       640       650    
pF1KB3 NFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEE
              610       620       630       640       650       660

          660       670       680       690       700       710    
pF1KB3 YNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQ
              670       680       690       700       710       720

          720       730       740       750       760       770    
pF1KB3 KVLAATDLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVLAATDLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVH
              730       740       750       760       770       780

          780  
pF1KB3 PLFKRFRK
       ::::::::
XP_011 PLFKRFRK
               

>>NP_001290345 (OMIM: 133510,610651,616390) TFIIH basal   (718 aa)
 initn: 4752 init1: 4752 opt: 4752  Z-score: 4919.8  bits: 921.0 E(85289):    0
Smith-Waterman score: 4752; 100.0% identity (100.0% similar) in 718 aa overlap (65-782:1-718)

           40        50        60        70        80        90    
pF1KB3 QEAVPSAAGKQVDESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYK
                                     ::::::::::::::::::::::::::::::
NP_001                               MPLKDDHTSRPLWVAPDGHIFLEAFSPVYK
                                             10        20        30

          100       110       120       130       140       150    
pF1KB3 YAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQ
               40        50        60        70        80        90

          160       170       180       190       200       210    
pF1KB3 FIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRECRLRNSEGEATELITETF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRECRLRNSEGEATELITETF
              100       110       120       130       140       150

          220       230       240       250       260       270    
pF1KB3 TSKSAISKTAESSGGPSTSRVTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSKSAISKTAESSGGPSTSRVTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQ
              160       170       180       190       200       210

          280       290       300       310       320       330    
pF1KB3 EMIEELQKRCIHLEYPLLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMIEELQKRCIHLEYPLLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRAR
              220       230       240       250       260       270

          340       350       360       370       380       390    
pF1KB3 SGVIVLPCGAGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGVIVLPCGAGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTS
              280       290       300       310       320       330

          400       410       420       430       440       450    
pF1KB3 DAKDKPIGCSVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAKDKPIGCSVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRV
              340       350       360       370       380       390

          460       470       480       490       500       510    
pF1KB3 LTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPM
              400       410       420       430       440       450

          520       530       540       550       560       570    
pF1KB3 SPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIR
              460       470       480       490       500       510

          580       590       600       610       620       630    
pF1KB3 LNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRR
              520       530       540       550       560       570

          640       650       660       670       680       690    
pF1KB3 QEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLA
              580       590       600       610       620       630

          700       710       720       730       740       750    
pF1KB3 GMEEEDLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMEEEDLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGAD
              640       650       660       670       680       690

          760       770       780  
pF1KB3 DTVYMEYHSSRSKAPSKHVHPLFKRFRK
       ::::::::::::::::::::::::::::
NP_001 DTVYMEYHSSRSKAPSKHVHPLFKRFRK
              700       710        

>>NP_001290347 (OMIM: 133510,610651,616390) TFIIH basal   (718 aa)
 initn: 4752 init1: 4752 opt: 4752  Z-score: 4919.8  bits: 921.0 E(85289):    0
Smith-Waterman score: 4752; 100.0% identity (100.0% similar) in 718 aa overlap (65-782:1-718)

           40        50        60        70        80        90    
pF1KB3 QEAVPSAAGKQVDESGTKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYK
                                     ::::::::::::::::::::::::::::::
NP_001                               MPLKDDHTSRPLWVAPDGHIFLEAFSPVYK
                                             10        20        30

          100       110       120       130       140       150    
pF1KB3 YAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YAQDFLVAIAEPVCRPTHVHEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQ
               40        50        60        70        80        90

          160       170       180       190       200       210    
pF1KB3 FIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRECRLRNSEGEATELITETF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIRECRLRNSEGEATELITETF
              100       110       120       130       140       150

          220       230       240       250       260       270    
pF1KB3 TSKSAISKTAESSGGPSTSRVTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSKSAISKTAESSGGPSTSRVTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQ
              160       170       180       190       200       210

          280       290       300       310       320       330    
pF1KB3 EMIEELQKRCIHLEYPLLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMIEELQKRCIHLEYPLLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRAR
              220       230       240       250       260       270

          340       350       360       370       380       390    
pF1KB3 SGVIVLPCGAGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGVIVLPCGAGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTS
              280       290       300       310       320       330

          400       410       420       430       440       450    
pF1KB3 DAKDKPIGCSVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAKDKPIGCSVAISTYSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRV
              340       350       360       370       380       390

          460       470       480       490       500       510    
pF1KB3 LTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPM
              400       410       420       430       440       450

          520       530       540       550       560       570    
pF1KB3 SPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPEFYREYVAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIR
              460       470       480       490       500       510

          580       590       600       610       620       630    
pF1KB3 LNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRR
              520       530       540       550       560       570

          640       650       660       670       680       690    
pF1KB3 QEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEAQRLGRVLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLA
              580       590       600       610       620       630

          700       710       720       730       740       750    
pF1KB3 GMEEEDLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMEEEDLAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGAD
              640       650       660       670       680       690

          760       770       780  
pF1KB3 DTVYMEYHSSRSKAPSKHVHPLFKRFRK
       ::::::::::::::::::::::::::::
NP_001 DTVYMEYHSSRSKAPSKHVHPLFKRFRK
              700       710        

>>XP_016859072 (OMIM: 133510,610651,616390) PREDICTED: T  (630 aa)
 initn: 4161 init1: 4161 opt: 4161  Z-score: 4308.8  bits: 807.8 E(85289):    0
Smith-Waterman score: 4161; 100.0% identity (100.0% similar) in 630 aa overlap (153-782:1-630)

            130       140       150       160       170       180  
pF1KB3 LYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESCHP
                                     ::::::::::::::::::::::::::::::
XP_016                               MQFIKLCTVSYGKVKLVLKHNRYFVESCHP
                                             10        20        30

            190       200       210       220       230       240  
pF1KB3 DVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQGKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQGKS
               40        50        60        70        80        90

            250       260       270       280       290       300  
pF1KB3 DIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRNDSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRNDSV
              100       110       120       130       140       150

            310       320       330       340       350       360  
pF1KB3 NPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCL
              160       170       180       190       200       210

            370       380       390       400       410       420  
pF1KB3 VLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSWE
              220       230       240       250       260       270

            430       440       450       460       470       480  
pF1KB3 AERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNF
              280       290       300       310       320       330

            490       500       510       520       530       540  
pF1KB3 LIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFR
              340       350       360       370       380       390

            550       560       570       580       590       600  
pF1KB3 ACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKI
              400       410       420       430       440       450

            610       620       630       640       650       660  
pF1KB3 NTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSL
              460       470       480       490       500       510

            670       680       690       700       710       720  
pF1KB3 VSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKVLAATDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKVLAATDL
              520       530       540       550       560       570

            730       740       750       760       770       780  
pF1KB3 DAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPLFKRFRK
              580       590       600       610       620       630

>>XP_011509097 (OMIM: 133510,610651,616390) PREDICTED: T  (636 aa)
 initn: 3723 init1: 3723 opt: 4139  Z-score: 4286.0  bits: 803.6 E(85289):    0
Smith-Waterman score: 4139; 99.1% identity (99.1% similar) in 636 aa overlap (153-782:1-636)

            130       140       150       160       170       180  
pF1KB3 LYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESCHP
                                     ::::::::::::::::::::::::::::::
XP_011                               MQFIKLCTVSYGKVKLVLKHNRYFVESCHP
                                             10        20        30

            190       200       210             220       230      
pF1KB3 DVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSA------ISKTAESSGGPSTSRVT
       :::::::::::::::::::::::::::::::::::::      :::::::::::::::::
XP_011 DVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAHLPLSQISKTAESSGGPSTSRVT
               40        50        60        70        80        90

        240       250       260       270       280       290      
pF1KB3 DPQGKSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DPQGKSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYD
              100       110       120       130       140       150

        300       310       320       330       340       350      
pF1KB3 FRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACT
              160       170       180       190       200       210

        360       370       380       390       400       410      
pF1KB3 VRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHT
              220       230       240       250       260       270

        420       430       440       450       460       470      
pF1KB3 TKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDK
              280       290       300       310       320       330

        480       490       500       510       520       530      
pF1KB3 IVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTM
              340       350       360       370       380       390

        540       550       560       570       580       590      
pF1KB3 NPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNF
              400       410       420       430       440       450

        600       610       620       630       640       650      
pF1KB3 KHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYN
              460       470       480       490       500       510

        660       670       680       690       700       710      
pF1KB3 AFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLAFSTKEEQQQLLQKV
              520       530       540       550       560       570

        720       730       740       750       760       770      
pF1KB3 LAATDLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LAATDLDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEYHSSRSKAPSKHVHPL
              580       590       600       610       620       630

        780  
pF1KB3 FKRFRK
       ::::::
XP_011 FKRFRK
             




782 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 13:23:31 2016 done: Thu Nov  3 13:23:32 2016
 Total Scan time: 10.990 Total Display time:  0.130

Function used was FASTA [36.3.4 Apr, 2011]
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