GENSCAN 1.0	Date run:  3-Nov-116	Time: 13:20:29

Sequence gi568815575f:41234253_41447716 : 213464 bp : 46.20% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 PlyA -    307    302    6                               1.05
 1.05 Term -   6466   6448   19  0  1  120   45     2 0.074  -3.11
 1.04 Intr -  11824  11664  161  1  2   -5  106   116 0.120   2.89
 1.03 Intr -  19622  19426  197  0  2   61   55   253 0.216  18.43
 1.02 Intr -  22503  22451   53  2  2   83  115     6 0.748   1.35
 1.01 Init -  24435  24347   89  0  2   71  101    56 0.949   5.33
 1.00 Prom -  31622  31583   40                              -3.86

 2.03 PlyA -  36569  36564    6                               1.05
 2.02 Term -  50012  49837  176  0  2  112   39   109 0.804   6.32
 2.01 Init -  51809  51716   94  2  1   69   45   120 0.929   4.35
 2.00 Prom -  62469  62430   40                              -4.66

 3.00 Prom +  66969  67008   40                               2.14
 3.01 Init + 100341 100517  177  2  0   43   27   204 0.794   7.06
 3.02 Intr + 103156 103213   58  0  1   67   92    68 0.808   3.56
 3.03 Intr + 104784 104831   48  1  0   76  100    32 0.700   1.85
 3.04 Intr + 107232 107364  133  1  1   69  115    76 0.775   8.10
 3.05 Intr + 108243 108401  159  0  0   84   98   181 0.772  17.80
 3.06 Intr + 108969 109099  131  0  2   23  115    71 0.704   3.64
 3.07 Intr + 109485 109570   86  1  2   50   71     9 0.451  -5.06
 3.08 Intr + 109778 109876   99  1  0   35  106    88 0.470   5.61
 3.09 Intr + 109987 110147  161  0  2   74   55    88 0.816   2.89
 3.10 Intr + 110928 111072  145  0  1   32   84    78 0.859   2.08
 3.11 Intr + 111152 111296  145  1  1  101   92    40 0.972   5.56
 3.12 Intr + 111977 112158  182  0  2   47   39   140 0.862   4.59
 3.13 Intr + 112253 112370  118  1  1   17  111    92 0.881   4.44
 3.14 Intr + 112607 112760  154  0  1   44   78   109 0.883   4.63
 3.15 Intr + 113060 113199  140  2  2   64   57   117 0.731   6.31
 3.16 Intr + 128354 128497  144  0  0   88   59    31 0.079   0.45
 3.17 Term + 140750 140847   98  0  2   96   49    58 0.038   0.83
 3.18 PlyA + 143831 143836    6                               1.05

 4.06 PlyA - 144390 144385    6                               1.05
 4.05 Term - 169354 169172  183  1  0   92   48    51 0.871  -0.96
 4.04 Intr - 171597 171450  148  2  1   96   93    47 0.831   6.24
 4.03 Intr - 194413 193273 1141  2  1    9   11   410 0.030  13.73
 4.02 Intr - 198866 198779   88  2  1   88   99   -21 0.050  -1.46
 4.01 Intr - 211375 211233  143  2  2   95   99    52 0.643   7.07

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  77557  77774  218  2  2   29   38   146 0.844   1.01
S.002 Init - 174219 174164   56  0  2   59   84    84 0.917   5.86


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815575f:41234253_41447716|GENSCAN_predicted_peptide_1|172_aa
MTLKKLGLLGGQGSSLPGSWTLESSMKEMRIVVKFGKTSIKFLSYKSEGSISSLRKTRLQ
SRRKGSGTGLVAKGASESRCRPRSGDCRRFAQSCSTREDAASKKYVNKPSLAQQTKSKAN
RHWSALKITPKHYEESFDELDRQMFQKILIANFSNKAKLTHKHTTTNSKLLL

>gi568815575f:41234253_41447716|GENSCAN_predicted_CDS_1|519_bp
atgacactgaagaagctaggacttcttggaggtcaaggttccagccttcctggttcttgg
acattagaatctagtatgaaggagatgcggattgttgtcaaatttgggaaaacctctatc
aagtttctttcatataaaagcgagggcagcatatcctcacttcggaagacccggctgcag
tcccggcgcaagggcagcggcaccggcttggttgctaagggggcttcggagtctcgctgc
cgtcctcgctcgggggactgtcggcgctttgcgcagtcgtgctccacgcgagaggacgcc
gccagcaagaaatatgtcaacaagcctagcctcgcgcagcaaacaaaaagtaaagctaac
cgccattggtcagccctgaaaatcacccccaagcattatgaagaatcatttgatgaacta
gataggcagatgttccagaagattcttattgctaatttcagcaacaaagccaagcttaca
cataaacacacaaccacaaactctaagctgcttttgtga

>gi568815575f:41234253_41447716|GENSCAN_predicted_peptide_2|89_aa
MEHLQASVSSGWAWARWAHCLSGRLALPAPGTSLALKVTCRDQDQQQHRDPDRNADSQVL
PQPYSETLGPEFPPGDSDACSSVSICIAL

>gi568815575f:41234253_41447716|GENSCAN_predicted_CDS_2|270_bp
atggagcacttgcaggccagcgtgagctctgggtgggcgtgggctcggtgggcccactgt
ctgagcggccggctggcgctgccagccccgggcacatccctggctctcaaggtgacctgc
agggaccaggaccagcagcagcatcgggatcctgatagaaatgcagattctcaggtccta
ccccagccttattcagaaactctgggcccagaattccctccaggggattctgatgcatgc
tccagtgtgagcatttgcatagctctctaa

>gi568815575f:41234253_41447716|GENSCAN_predicted_peptide_3|725_aa
MRESRLISDLGGFAGVRSAAGRDWRPFWLGGLRPSRLAQPGFPSGGPGGTRCLRACEQGF
AGLDLNSSDNQSGGSTASKGRYIPPHLRNREATKGFYDKDSSGWSSSKDKDAYSSFGSRS
DSRGKSSFFSDRGSGSRGRFDDRGRSDYDGIGSRGDRSGFGKFERGGNSRWCDKSDEDDW
SKPLPPSERLEHDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT
AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY
RSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADR
MLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST
SENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSI
HGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR
TGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHYKGSSRGRSKSS
RFSGGFGARDYRQSSGASSSSFSSSRASSSRSGGGGHGSSRGFGGGLNSSVTSPERLSLT
SLTNYSNYKVPRKRYRKDIRPLTGLWASLFPMGGSAPLTSRLVTEKQGYVAQSILRVFKG
NTPSA

>gi568815575f:41234253_41447716|GENSCAN_predicted_CDS_3|2178_bp
atgcgcgaatcccgactgattagtgacctgggggggtttgcgggagtgcgcagcgcggcg
ggacgcgactggaggcccttttggcttggagggcttcggccttcacggctggcgcagcct
ggattcccgtccggaggacctggcggcacccggtgtttgcgtgcctgcgagcaagggttt
gctggcctagacctgaactcttcagataatcagagtggaggaagtacagccagcaaaggg
cgctatattcctcctcatttaaggaaccgagaagctactaaaggtttctacgataaagac
agttcagggtggagttctagcaaagataaggatgcgtatagcagttttggatctcgtagt
gattcaagagggaagtctagcttcttcagtgatcgtggaagtggatcaaggggaaggttt
gatgatcgtggacggagtgattacgatggcattggcagccgtggtgacagaagtggcttt
ggcaaatttgaacgtggtggaaacagtcgctggtgtgacaaatcagatgaagatgattgg
tcaaaaccactcccaccaagtgaacgcttggaacatgatgttgagatgggagaaattatc
atgggaaacattgagcttactcgttatactcgcccaactccagtgcaaaagcatgctatt
cctattatcaaagagaaaagagacttgatggcttgtgcccaaacagggtctggaaaaact
gcagcatttctgttgcccatcttgagtcagatttattcagatggtccaggcgaggctttg
agggccatgaaggaaaatggaaggtatgggcgccgcaaacaatacccaatctccttggta
ttagcaccaacgagagagttggcagtacagatctacgaggaagccagaaaattttcatac
cgatctagagttcgtccttgcgtggtttatggtggtgccgatattggtcagcagattcga
gacttggaacgtggatgccatttgttagtagccactccaggacgtctagtggatatgatg
gaaagaggaaagattggattagacttttgcaaatacttggtgttagatgaagctgatcgg
atgttggatatggggtttgagcctcagattcgtagaatagtcgaacaagatactatgcct
ccaaagggtgtccgccacactatgatgtttagtgctacttttcctaaggaaatacagatg
ctggctcgtgatttcttagatgaatatatcttcttggctgtaggaagagttggctctacc
tctgaaaacatcacacagaaagtagtttgggtggaagaatcagacaaacggtcatttctg
cttgacctcctaaatgcaacaggcaaggattcactgaccttagtgtttgtggagaccaaa
aagggtgcagattctctggaggatttcttataccatgaaggatacgcatgtaccagcatc
catggagaccgttctcagagggatagagaagaggcccttcaccagttccgctcaggaaaa
agcccaattttagtggctacagcagtagcagcaagaggactggacatttcaaatgtgaaa
catgttatcaattttgacttgccaagtgatattgaagaatatgtacatcgtattggtcgt
acgggacgtgtaggaaaccttggcctggcaacctcattctttaacgagaggaacataaat
attactaaggatttgttggatcttcttgttgaagctaaacaagaagtgccgtcttggtta
gaaaacatggcttatgaacaccactacaagggtagcagtcgtggacgttctaagagtagc
agatttagtggagggtttggtgccagagactaccgacaaagtagcggtgccagcagttcc
agcttcagcagcagccgcgcaagcagcagccgcagtggcggaggtggccacggtagcagc
agaggatttggtggaggactcaactcaagtgtcacttctcctgagaggctctccctgaca
tccttaactaactactctaattataaagttccaaggaagcgctacagaaaagacatccgt
cccctgacagggctctgggctagtctcttccctatgggaggttctgctcctttaacaagc
aggctggttaccgagaagcaaggatacgtggcacagagcatcctcagggtcttcaaaggc
aacacccccagtgcttag

>gi568815575f:41234253_41447716|GENSCAN_predicted_peptide_4|567_aa
XQWAWCSGTGIPLRKTFFSTCELKHFSQVENKEASETLGIKRKEPIHQLRVAIWTHQGQK
CSRRSPLDYFWEKISLPGKEEVKLSLFADDVIVYLENPIVSAQNLLKLISNFSKVSGYKI
NVQKSQAFLYTNNRQTESQIMSGHPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLSEIK
EDTNKWKNIPCSWVGRINIMKMAILPKVIYRFNGIPIKLPMTFFTELEKTTLKFIWNQKR
ARITKSILSQKNKAGGITLPDFKLYYKATVTKTAWYWYQNRDVDQWNRTEPSEITPHIYN
YLIFDKPEKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLTPYTKINSRWIKDLNIRPKT
IKTLEENLGITIQDIGMGKDFMSKTPKAMATKAKIDKWDLIKLKSFCTAKETTIRVNRQP
TKWEKIFATYSSDKGLISRIYNELKQIYKKKTNNPIKKACPWHLCLSDKWPDNPVLGIPS
TAKPVQSTCKTQLEQSEPGARPSQLSLRGVTLLLFLNENSSQKEHLNVKPKTIKTLEENL
GTTIQGTGTGKDFMTKIANSNCNKSKN

>gi568815575f:41234253_41447716|GENSCAN_predicted_CDS_4|1704_bp
ngccagtgggcctggtgctctggcactgggatcccactaaggaagaccttcttctccacc
tgtgaactgaaacatttctcccaagtggaaaataaggaggcatcagagactcttggcata
aaaaggaaggagcccatccaccagttgagagtagccatatggacccatcagggccaaaaa
tgttcaaggagaagtccgctggattacttctgggaaaaaatttctcttcctggaaaagag
gaagtcaaattgtccctgtttgcagatgacgtgattgtatatctagaaaaccccatcgtc
tcagcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatc
aatgtacaaaaatcacaagcattcttatacaccaataacagacaaacagagagccaaatc
atgagtggacacccattcacaattgcttcaaagagaataaaatacctaggaatccaactt
acaagggacgtgaaggacctcttcaaggagaactacaaaccactgctcagtgaaataaaa
gaggatacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcatg
aaaatggccatactgcccaaggtaatttatagattcaatggcatccccatcaagctacca
atgaccttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaaga
gcccgcatcaccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacct
gacttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaac
agagatgtagatcaatggaacagaacagagccctcagaaataacaccgcatatctacaac
tatctgatctttgacaaacctgagaaaaataagcaatggggaaaggattccctatttaat
aaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttcctt
acaccttatacaaaaattaattcaagatggattaaagacttaaacattagacctaaaacc
ataaaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggac
ttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatcta
attaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacct
acaaaatgggagaaaattttcgcaacctactcatctgacaaagggctaatatccagaatc
tacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaaggcatgt
ccctggcacctctgtctcagtgacaagtggccagacaatccagtgctggggattccgtct
acagccaagccagtgcagagcacctgcaagacgcagctggagcagagtgagccgggggca
aggccaagccagctgagcctgcgtggcgtcacccttctactattcctcaatgagaacagt
agtcaaaaagaacacttaaatgtaaaacccaaaactataaaaaccctagaagaaaatcta
ggcactaccattcagggcacaggcacaggcaaagatttcatgacaaaaattgccaacagc
aattgcaacaaaagcaaaaattga