Result of FASTA (omim) for pF1KB3329
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3329, 949 aa
  1>>>pF1KB3329 949 - 949 aa - 949 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7767+/-0.00042; mu= 10.2629+/- 0.026
 mean_var=160.5118+/-32.118, 0's: 0 Z-trim(116.1): 405  B-trim: 38 in 1/55
 Lambda= 0.101233
 statistics sampled from 26657 (27076) to 26657 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.317), width:  16
 Scan time: 13.300

The best scores are:                                      opt bits E(85289)
NP_061725 (OMIM: 606317) protocadherin alpha-11 is ( 949) 6213 920.4       0
NP_114067 (OMIM: 606317) protocadherin alpha-11 is ( 810) 5168 767.7       0
NP_061727 (OMIM: 606319) protocadherin alpha-13 is ( 950) 5035 748.3 4.1e-215
NP_061734 (OMIM: 606314) protocadherin alpha-8 iso ( 950) 5034 748.2 4.6e-215
NP_061732 (OMIM: 606312) protocadherin alpha-6 iso ( 950) 5003 743.7 1.1e-213
NP_061723 (OMIM: 606307) protocadherin alpha-1 iso ( 950) 5000 743.2 1.4e-213
NP_061730 (OMIM: 606310) protocadherin alpha-4 iso ( 947) 4991 741.9 3.5e-213
NP_061724 (OMIM: 606316) protocadherin alpha-10 is ( 948) 4967 738.4  4e-212
NP_061728 (OMIM: 606308) protocadherin alpha-2 iso ( 948) 4963 737.8  6e-212
NP_061729 (OMIM: 606309) protocadherin alpha-3 iso ( 950) 4940 734.5 6.2e-211
NP_114063 (OMIM: 606315) protocadherin alpha-9 iso ( 950) 4876 725.1  4e-208
NP_114071 (OMIM: 606319) protocadherin alpha-13 is ( 807) 4005 597.9  7e-170
NP_114062 (OMIM: 606314) protocadherin alpha-8 iso ( 814) 3993 596.1 2.4e-169
NP_061726 (OMIM: 606318) protocadherin alpha-12 is ( 941) 3968 592.5 3.3e-168
NP_113688 (OMIM: 606310) protocadherin alpha-4 iso ( 798) 3964 591.9 4.4e-168
NP_114036 (OMIM: 606312) protocadherin alpha-6 iso ( 803) 3960 591.3 6.6e-168
NP_113598 (OMIM: 606307) protocadherin alpha-1 iso ( 807) 3955 590.6 1.1e-167
NP_114070 (OMIM: 606318) protocadherin alpha-12 is ( 792) 3934 587.5 9.1e-167
NP_061731 (OMIM: 606311) protocadherin alpha-5 iso ( 936) 3931 587.1 1.4e-166
NP_061733 (OMIM: 606313) protocadherin alpha-7 iso ( 937) 3929 586.8 1.7e-166
NP_114065 (OMIM: 606316) protocadherin alpha-10 is ( 844) 3924 586.0 2.6e-166
NP_113684 (OMIM: 606308) protocadherin alpha-2 iso ( 808) 3918 585.1 4.7e-166
NP_113683 (OMIM: 606308) protocadherin alpha-2 iso ( 824) 3918 585.2 4.7e-166
NP_113689 (OMIM: 606311) protocadherin alpha-5 iso ( 816) 3906 583.4 1.6e-165
NP_114040 (OMIM: 606313) protocadherin alpha-7 iso ( 789) 3903 583.0 2.1e-165
NP_113685 (OMIM: 606309) protocadherin alpha-3 iso ( 824) 3901 582.7 2.6e-165
NP_054724 (OMIM: 606315) protocadherin alpha-9 iso ( 842) 3831 572.5 3.2e-162
NP_113599 (OMIM: 606307) protocadherin alpha-1 iso ( 686) 2608 393.8 1.6e-108
NP_114037 (OMIM: 606312) protocadherin alpha-6 iso ( 686) 2604 393.2 2.4e-108
NP_114066 (OMIM: 606316) protocadherin alpha-10 is ( 685) 2602 392.9 2.9e-108
NP_002579 (OMIM: 603627) protocadherin gamma-C3 is ( 934) 1979 302.0 9.2e-81
NP_061748 (OMIM: 606302) protocadherin gamma-B5 is ( 923) 1975 301.4 1.4e-80
NP_003727 (OMIM: 603058) protocadherin gamma-B4 is ( 923) 1946 297.2 2.6e-79
NP_061750 (OMIM: 606304) protocadherin gamma-B7 is ( 929) 1946 297.2 2.6e-79
NP_115778 (OMIM: 603627) protocadherin gamma-C3 is ( 863) 1943 296.7 3.3e-79
NP_115265 (OMIM: 603059) protocadherin gamma-A12 i ( 820) 1936 295.7 6.5e-79
NP_003726 (OMIM: 603059) protocadherin gamma-A12 i ( 932) 1936 295.7 7.2e-79
NP_114480 (OMIM: 606298) protocadherin gamma-A11 i ( 837) 1925 294.1   2e-78
NP_061737 (OMIM: 606298) protocadherin gamma-A11 i ( 935) 1925 294.1 2.2e-78
NP_114479 (OMIM: 606297) protocadherin gamma-A10 i ( 850) 1922 293.7 2.7e-78
NP_061736 (OMIM: 606297) protocadherin gamma-A10 i ( 936) 1922 293.7   3e-78
NP_115272 (OMIM: 606304) protocadherin gamma-B7 is ( 808) 1920 293.3 3.2e-78
NP_114443 (OMIM: 606292) protocadherin gamma-A5 is ( 813) 1919 293.2 3.6e-78
NP_114442 (OMIM: 606291) protocadherin gamma-A4 is ( 851) 1919 293.2 3.7e-78
NP_061741 (OMIM: 606292) protocadherin gamma-A5 is ( 931) 1919 293.2   4e-78
NP_114475 (OMIM: 606293) protocadherin gamma-A6 is ( 818) 1917 292.9 4.4e-78
NP_061742 (OMIM: 606293) protocadherin gamma-A6 is ( 932) 1917 293.0 4.9e-78
NP_115266 (OMIM: 606299) protocadherin gamma-B1 is ( 810) 1914 292.5 5.9e-78
NP_061745 (OMIM: 606299) protocadherin gamma-B1 is ( 927) 1914 292.5 6.6e-78
NP_061740 (OMIM: 606291) protocadherin gamma-A4 is ( 962) 1914 292.5 6.8e-78


>>NP_061725 (OMIM: 606317) protocadherin alpha-11 isofor  (949 aa)
 initn: 6213 init1: 6213 opt: 6213  Z-score: 4912.7  bits: 920.4 E(85289):    0
Smith-Waterman score: 6213; 100.0% identity (100.0% similar) in 949 aa overlap (1-949:1-949)

               10        20        30        40        50        60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMSIKPNGRHLFTLDQNNGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMSIKPNGRHLFTLDQNNGE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 VRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVRE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 DAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 ELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 ADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 VPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 GYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 GYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTA
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 TATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTAL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 WWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 WWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGLN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB3 KEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 KEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPT
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB3 VSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQ
              850       860       870       880       890       900

              910       920       930       940         
pF1KB3 EPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 EPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       940         

>>NP_114067 (OMIM: 606317) protocadherin alpha-11 isofor  (810 aa)
 initn: 5168 init1: 5168 opt: 5168  Z-score: 4088.9  bits: 767.7 E(85289):    0
Smith-Waterman score: 5168; 100.0% identity (100.0% similar) in 797 aa overlap (1-797:1-797)

               10        20        30        40        50        60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMSIKPNGRHLFTLDQNNGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMSIKPNGRHLFTLDQNNGE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 VRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 VRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVRE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 DAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 DAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 ELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 ELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 ADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 ADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 VPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 VPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 GYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 GYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTA
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 TATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 TATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTAL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 WWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 WWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGLN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB3 KEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPT
       :::::::::::::::::                                           
NP_114 KEEEGERQEPGSNHPGQVSFLQIPPIRKCM                              
              790       800       810                              

>>NP_061727 (OMIM: 606319) protocadherin alpha-13 isofor  (950 aa)
 initn: 5026 init1: 3756 opt: 5035  Z-score: 3982.9  bits: 748.3 E(85289): 4.1e-215
Smith-Waterman score: 5035; 81.7% identity (92.4% similar) in 945 aa overlap (10-949:7-950)

               10           20        30        40        50       
pF1KB3 MFGFQRRGLGTPR---LQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELA
                : ::   : ::::.:  ::.::::::::: :::::::::::::::::::::
NP_061    MLSSWQGGPRPRQLLLWLLILAAWETGSGQLHYSVPEEAKHGTFVGRIAQDLGLELA
                  10        20        30        40        50       

        60        70        80        90       100       110       
pF1KB3 ELVQRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVF
       ::: :::::::: :::::::::::::::::::::::::::.:::::::::::::::::::
NP_061 ELVPRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVF
        60        70        80        90       100       110       

       120       130       140       150       160       170       
pF1KB3 HVNVEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEY
       ::.:.:.:::::::.:   .....::::.  ..::::.:::::::  :. :::::. :.:
NP_061 HVEVKVRDINDNPPIFPESKKRIIIAESRPPETRFPLDGASDADIGVNSALTYRLDPNDY
       120       130       140       150       160       170       

       180       190       200       210       220       230       
pF1KB3 FSLDSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVND
       :.::. .. .:.. :::.:.:.::::.  : .:::::.:::::::::::.::. .:::::
NP_061 FTLDAQNSLEQMSSLSLVLRKTLDREEIQEHSLLLTASDGGKPELTGTVQLLITILDVND
       180       190       200       210       220       230       

       240       250       260       270       280        290      
pF1KB3 NDPEFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQ
       : ::: .: :::...::: . :::.:::::: :.:.::...::.   . :   . ::.. 
NP_061 NAPEFYQSVYKVTVLENAFNGTLVIKLNATDPDDGTNGDIVYSFRRPVWPAVVYAFTINP
       240       250       260       270       280       290       

        300       310       320       330       340       350      
pF1KB3 NNGEVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSL
       ::::.:..: ::.::.:.:.: :.:.:::. :::::::. ::.::.:::.:::..:::::
NP_061 NNGEIRTKGKLDFEEKKLYEISVEAVDKGNIPMAGHCTLLVEVLDVNDNAPEVTITSLSL
       300       310       320       330       340       350       

        360       370       380       390       400       410      
pF1KB3 PVREDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDREN
       :.:::.:::..:::::::::::: ::::::.::::::::::::.:::::::::::::::.
NP_061 PIREDTQPSAIIALISVSDRDSGSNGQVTCTLTPHVPFKLVSTYKNYYSLVLDSALDRES
       360       370       380       390       400       410       

        420       430       440       450       460       470      
pF1KB3 VWAYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTV
       : :::::::::::::::::::: ::: :::::::::::::::::::::::::::::::::
NP_061 VSAYELVVTARDGGSPSLWATASVSVGVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTV
       420       430       440       450       460       470       

        480       490       500       510       520       530      
pF1KB3 SARDADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSA
       ::.::::::::::::::::::.:.::::::::::::::::::::::::::::::::::::
NP_061 SAQDADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSA
       480       490       500       510       520       530       

        540       550       560       570       580       590      
pF1KB3 RDAGVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAV
       ::.:::::.::::::::::::::::::::.  ::::::.:..:.::::::::::::::::
NP_061 RDSGVPPLGSNVTLQVFVLDENDNAPALLTPGAGSAGGTVSELMPRSVGAGHVVAKVRAV
       540       550       560       570       580       590       

        600       610       620       630       640       650      
pF1KB3 DADSGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEP
       ::::::::::::::: :: :.::::::::::::::::: :::.:.:.:::::::::::::
NP_061 DADSGYNAWLSYELQLAAVGARIPFRVGLYTGEISTTRPLDEVDAPHHRLLVLVKDHGEP
       600       610       620       630       640       650       

        660       670       680       690       700       710      
pF1KB3 ALTATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLL
       :::::::::.:::::::::.::::. :::..:::::::::::::::::.:::::::::::
NP_061 ALTATATVLLSLVESGQAPQASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLL
       660       670       680       690       700       710       

        720       730       740       750       760       770      
pF1KB3 YTALWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLP
       ::::  :: :::::::::::::::: :.:::::::::: :::: ::: ::::::::::::
NP_061 YTALRCSAPPTEGACAPGKPTLVCSSAAGSWSYSQQRRPRVCSGEGPHKTDLMAFSPSLP
       720       730       740       750       760       770       

        780        790       800       810       820       830     
pF1KB3 LGLNKEE-EGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPD
         :.. :  :.:.:  :.   .::::::::::::::::::::::::::::::::::::::
NP_061 PCLGSAEGTGQREED-SECLKEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPD
       780       790        800       810       820       830      

         840       850       860       870       880       890     
pF1KB3 QQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAI
        840       850       860       870       880       890      

         900       910       920       930       940         
pF1KB3 ISIRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ISIRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
        900       910       920       930       940       950

>>NP_061734 (OMIM: 606314) protocadherin alpha-8 isoform  (950 aa)
 initn: 5039 init1: 3758 opt: 5034  Z-score: 3982.1  bits: 748.2 E(85289): 4.6e-215
Smith-Waterman score: 5034; 81.6% identity (91.8% similar) in 948 aa overlap (4-949:3-950)

                10        20        30        40        50         
pF1KB3 MFGFQRRG-LGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAEL
          .. :: ::. :: : ::::  :.:::::::::: :::::::::::::::::::::::
NP_061  MDYHWRGELGSWRLLLLLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAEL
                10        20        30        40        50         

      60        70        80        90       100       110         
pF1KB3 VQRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHV
       : :::::::: : :::::.:::::::::::::::::::.:::::::::::::::::::::
NP_061 VPRLFRVASKRHRDLLEVSLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHV
      60        70        80        90       100       110         

     120       130       140       150       160       170         
pF1KB3 NVEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFS
       .:::::.::::::: ...:::...::.. :::::::::::::.  :..::::::...:: 
NP_061 DVEVKDVNDNPPVFRVKDQKLFVSESRMPDSRFPLEGASDADVGANSVLTYRLSSHDYFM
     120       130       140       150       160       170         

     180       190       200       210       220       230         
pF1KB3 LDSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDND
       ::  ... . : . :.:.:::::: .:  .:.:::::::::::::::.::: ::::::: 
NP_061 LDVNSKNDENKLVELVLRKSLDREDAPAHHLFLTATDGGKPELTGTVQLLVTVLDVNDNA
     180       190       200       210       220       230         

     240       250       260       270       280        290        
pF1KB3 PEFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNN
       : :..:::.: ..::: . : :.::::.: :::.:: ..::. : ..      :..:.:.
NP_061 PTFEQSEYEVRIFENADNGTTVIKLNASDPDEGANGAISYSFNSLVETMVIDHFSIDRNT
     240       250       260       270       280       290         

      300       310       320       330       340       350        
pF1KB3 GEVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPV
       ::. . :.::.:....::: ..::::: ::::::::: :.::: ::: ::.:.:::::::
NP_061 GEIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPV
     300       310       320       330       340       350         

      360       370       380       390       400       410        
pF1KB3 REDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVW
       ::::: .::::::::.: :::.:::::::: :::::::::::::::::::::::::: : 
NP_061 REDAQFGTVIALISVNDLDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRERVS
     360       370       380       390       400       410         

      420       430       440       450       460       470        
pF1KB3 AYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
       :::::::::::::::::::: .::::::::::::::::::::::::::::::::::::::
NP_061 AYELVVTARDGGSPSLWATASLSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
     420       430       440       450       460       470         

      480       490       500       510       520       530        
pF1KB3 RDADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD
       :::::::::::::::::::.:.:.::::.:::.:::::::::::::::::::::::::::
NP_061 RDADAQENALVSYSLVERRVGERSLSSYISVHTESGKVYALQPLDHEELELLQFQVSARD
     480       490       500       510       520       530         

      540       550       560       570       580       590        
pF1KB3 AGVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDA
       ::::::.::::::::::::::::::::  ..:..:::..:::::::::::::::::::::
NP_061 AGVPPLGSNVTLQVFVLDENDNAPALLEPRVGGTGGAASKLVPRSVGAGHVVAKVRAVDA
     540       550       560       570       580       590         

      600       610       620       630       640       650        
pF1KB3 DSGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPAL
       ::::::::::::::::.. :::::::::::::::::.:::::::::::::::::::::::
NP_061 DSGYNAWLSYELQPAASSPRIPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPAL
     600       610       620       630       640       650         

      660       670       680       690       700       710        
pF1KB3 TATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYT
       ::::::::::::::::::::::  ::. .:::::::::::::::::.:::::::::::::
NP_061 TATATVLVSLVESGQAPKASSRQSAGVLGPEAALVDVNVYLIIAICAVSSLLVLTLLLYT
     660       670       680       690       700       710         

      720       730       740       750       760       770        
pF1KB3 ALWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLG
       ::  :: ::::.:  :::::::: ::::::::::. ::::: ::::::::::::: ::  
NP_061 ALRCSALPTEGGCRAGKPTLVCSSAVGSWSYSQQQPQRVCSGEGPPKTDLMAFSPCLPPD
     720       730       740       750       760       770         

      780       790       800       810       820       830        
pF1KB3 LNKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
       :.. . ::.:. . .:  .:::::::::::::::::::::::::::::::::::::::::
NP_061 LGSVDVGEEQDLNVDHGLKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
     780       790       800       810       820       830         

      840       850       860       870       880       890        
pF1KB3 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
     840       850       860       870       880       890         

      900       910       920       930       940         
pF1KB3 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
     900       910       920       930       940       950

>>NP_061732 (OMIM: 606312) protocadherin alpha-6 isoform  (950 aa)
 initn: 5008 init1: 3742 opt: 5003  Z-score: 3957.7  bits: 743.7 E(85289): 1.1e-213
Smith-Waterman score: 5003; 81.7% identity (92.1% similar) in 946 aa overlap (9-949:9-950)

               10        20        30        40        50        60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               ::   : : ::::  :.:::::::::: ::::::::::::::::::::::::
NP_061 MVFTPEDRLGKQCLLLPLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
        ::::.::: . :::::::::::::::::::::::::.:::::::::::::::::::::.
NP_061 PRLFRMASKDREDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
       :::.:::::::.: ..::..:: ::.  :: ::::::::::.  :..:::.::..:::.:
NP_061 VEVRDINDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
       :   :. . :...:.::::::::..:  ::.:::::::::::::::.::: ::::::: :
NP_061 DVKINSDDNKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAP
              190       200       210       220       230       240

              250       260       270       280         290        
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMSIKPNG--RHLFTLDQNN
        :..:::.: ..::: . : :..:::.:::::.:: ..::. :.       : :..:.:.
NP_061 TFEQSEYEVRIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDH-FSIDRNT
              250       260       270       280       290          

      300       310       320       330       340       350        
pF1KB3 GEVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPV
       ::. . :.::.:....::: ..::::: ::::::::: :.::: ::: ::.:.:::::::
NP_061 GEIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPV
     300       310       320       330       340       350         

      360       370       380       390       400       410        
pF1KB3 REDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVW
       ::::: .::::::::.: :::.::::.::::::::::::::::::::::::::::::.: 
NP_061 REDAQFGTVIALISVNDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVS
     360       370       380       390       400       410         

      420       430       440       450       460       470        
pF1KB3 AYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
       :::::::::::::::::::: .::::::.:::::::::::::::::::::::::::::::
NP_061 AYELVVTARDGGSPSLWATASLSVEVADMNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
     420       430       440       450       460       470         

      480       490       500       510       520       530        
pF1KB3 RDADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD
       :::::::::::::::::::.:.::::::.:::::::::::::::::::::::::::::::
NP_061 RDADAQENALVSYSLVERRVGERALSSYISVHAESGKVYALQPLDHEELELLQFQVSARD
     480       490       500       510       520       530         

      540       550       560       570       580       590        
pF1KB3 AGVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDA
       ::::::.::::::::::::::::::::: ..:..::::..:::::.:::.::::::::::
NP_061 AGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVSELVPRSLGAGQVVAKVRAVDA
     540       550       560       570       580       590         

      600       610       620       630       640       650        
pF1KB3 DSGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPAL
       :::::::::::::: :...:.:::::::::::::::.:::::::::::::::::::::::
NP_061 DSGYNAWLSYELQPPASSARFPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPAL
     600       610       620       630       640       650         

      660       670       680       690       700       710        
pF1KB3 TATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYT
       ::::::::::::::::::::::. .:::.:::::::::::::::::.:::::::::::::
NP_061 TATATVLVSLVESGQAPKASSRASVGAAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYT
     660       670       680       690       700       710         

      720       730       740       750       760       770        
pF1KB3 ALWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSL---
       ::  :: ::::::.  ::::::: ::::::::::::::::: ::::: :::::::::   
NP_061 ALRCSAPPTEGACTADKPTLVCSSAVGSWSYSQQRRQRVCSGEGPPKMDLMAFSPSLSPC
     720       730       740       750       760       770         

         780       790       800       810       820       830     
pF1KB3 PLGLNKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPD
       :. ..:   .: :. . .: ..::::::::::::::::::::::::::::::::::::::
NP_061 PIMMGK---AENQDLNEDHDAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPD
     780          790       800       810       820       830      

         840       850       860       870       880       890     
pF1KB3 QQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAI
        840       850       860       870       880       890      

         900       910       920       930       940         
pF1KB3 ISIRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ISIRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
        900       910       920       930       940       950

>>NP_061723 (OMIM: 606307) protocadherin alpha-1 isoform  (950 aa)
 initn: 4995 init1: 3729 opt: 5000  Z-score: 3955.3  bits: 743.2 E(85289): 1.4e-213
Smith-Waterman score: 5000; 81.9% identity (91.7% similar) in 948 aa overlap (4-949:3-950)

                10        20        30        40        50         
pF1KB3 MFGFQRRG-LGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAEL
          :.::: ::.  : ::::::  :::::::::::. :::::::::::.:::::::::::
NP_061  MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAEL
                10        20        30        40        50         

      60        70        80        90       100       110         
pF1KB3 VQRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHV
       : :::::::::: ::::::::::::::::::::::::  :::::::::.:.:::::::::
NP_061 VPRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHV
      60        70        80        90       100       110         

     120       130       140       150       160       170         
pF1KB3 NVEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFS
       .:.:::::::::::  ::: ..: ::.  .::::.:::.::::  :::::: :: ..:::
NP_061 EVKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFS
     120       130       140       150       160       170         

     180       190       200       210       220       230         
pF1KB3 LDSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDND
       ::  .. .  : : : :.: ::::.::::.::::::::::::: :::.::. ::::::: 
NP_061 LDVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNA
     180       190       200       210       220       230         

     240       250       260       270       280        290        
pF1KB3 PEFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNN
       : ::.. :.: :.:..:. :::  :::.: ::::::::..:. : :. . .. : .:...
NP_061 PLFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSS
     240       250       260       270       280       290         

      300       310       320       330       340       350        
pF1KB3 GEVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPV
       ::.:.   :::::.: :.:.:.:.:::.:::..:: : :..::.:::.::.::::: ::.
NP_061 GEIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPI
     300       310       320       330       340       350         

      360       370       380       390       400       410        
pF1KB3 REDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVW
       ::::  :::::::.:::::::.:::::::: ::::::::::::::::::::::::::.. 
NP_061 REDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLS
     360       370       380       390       400       410         

      420       430       440       450       460       470        
pF1KB3 AYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
       .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
     420       430       440       450       460       470         

      480       490       500       510       520       530        
pF1KB3 RDADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD
       :::::::::::::::::::.:.::::.:::::::::::::::::::::::::::::::::
NP_061 RDADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARD
     480       490       500       510       520       530         

      540       550       560       570       580       590        
pF1KB3 AGVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDA
       ::::::.::::::::::::::::::::: ..:.. :::..:::: :::::::::::::::
NP_061 AGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDA
     540       550       560       570       580       590         

      600       610       620       630       640       650        
pF1KB3 DSGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPAL
       ::::::::::::::::::.:::::::::::::::::.:::::  :.::::::::::::::
NP_061 DSGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPAL
     600       610       620       630       640       650         

      660       670       680       690       700       710        
pF1KB3 TATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYT
       ::::::::::::::::::::::. .:.:.:::::::::::::::::.:::::::::::::
NP_061 TATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYT
     660       670       680       690       700       710         

      720       730       740       750       760       770        
pF1KB3 ALWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLG
       ::  :. ::::: .::::::::: :.:::: :::::::::: :::::::::::::.:  .
NP_061 ALRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPS
     720       730       740       750       760       770         

      780       790       800       810       820       830        
pF1KB3 LNKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
       ::  :..:. : . .  :.:::::::::::::::::::::::::::::::::::::::::
NP_061 LNTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
     780       790       800       810       820       830         

      840       850       860       870       880       890        
pF1KB3 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
     840       850       860       870       880       890         

      900       910       920       930       940         
pF1KB3 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
     900       910       920       930       940       950

>>NP_061730 (OMIM: 606310) protocadherin alpha-4 isoform  (947 aa)
 initn: 3980 init1: 2688 opt: 4991  Z-score: 3948.2  bits: 741.9 E(85289): 3.5e-213
Smith-Waterman score: 4991; 81.9% identity (91.5% similar) in 943 aa overlap (8-949:8-947)

               10        20        30        40        50        60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
              :  . :: : ::::  ::.:.::::::::::::::::::::::::::::::::
NP_061 MEFSWGSGQESRRLLLLLLLLAAWEAGNGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
        :::::::: .: ::::::::::::::::::::::: .:::::::::::::::::::::.
NP_061 PRLFRVASKGRGGLLEVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDRPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
       :::.:::::::::   ...: ::::.  :::::::::::::: :::::::::: ::::::
NP_061 VEVRDINDNPPVFPATQKNLSIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
       ..: . . .: :.:::.::::::..::. :.:::::::::::::::.::. :::.::: :
NP_061 EKPPDDELVKGLGLILRKSLDREEAPEIFLVLTATDGGKPELTGTVQLLITVLDANDNAP
              190       200       210       220       230       240

              250       260       270       280        290         
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNG
        ::.. ::: :.::. . :::.::::.: :::.::...::. . :.:: .  : .:  .:
NP_061 AFDRTIYKVRLLENVPNGTLVIKLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITG
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KB3 EVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVR
       .. :.: .:.::.: :.: :.. :::  :..::: : ::. :.::: :..   :::::.:
NP_061 QIIVKGYIDFEESKSYEIIVEGIDKGQLPLSGHCRVIVEVEDNNDNVPDLEFKSLSLPIR
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KB3 EDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWA
       :::  .::::::::::.: :::: :::::: :::::::::::::::::::::::::.: :
NP_061 EDAPLGTVIALISVSDKDMGVNGLVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRESVSA
              370       380       390       400       410       420

     420       430       440       450       460       470         
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
       ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: 
NP_061 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW
              430       440       450       460       470       480

     480       490       500       510       520       530         
pF1KB3 DADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       ::::::::::::::::::.:.::::::::::::::::::::::::::::::::::.::::
NP_061 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVTARDA
              490       500       510       520       530       540

     540       550       560       570       580       590         
pF1KB3 GVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDAD
       :::::.::::::::::::::::::::: .::..::::..::: :::.:::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGGTGGAVSELVPWSVGVGHVVAKVRAVDAD
              550       560       570       580       590       600

     600       610       620       630       640       650         
pF1KB3 SGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
       :::::::::::::..::.:::::::::::::::::::::.:.::::::::::::::::::
NP_061 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPALT
              610       620       630       640       650       660

     660       670       680       690       700       710         
pF1KB3 ATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTA
       :::::::::::::::::::::.:.::..:.:::::::::::::::.::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSRALVGAVGPDAALVDVNVYLIIAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

     720       730       740       750       760       770         
pF1KB3 LWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGL
       :  :: :::::::::::::::: :::::::::::: :::: :::::::::::::::: . 
NP_061 LRCSALPTEGACAPGKPTLVCSSAVGSWSYSQQRRPRVCSGEGPPKTDLMAFSPSLPDSR
              730       740       750       760       770       780

     780       790       800       810       820       830         
pF1KB3 NKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
       ..:.. .  : .    ..::::::::::::::::::::::::::::::::::::::::::
NP_061 DREDQLQTTEESF---AKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
              790          800       810       820       830       

     840       850       860       870       880       890         
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       840       850       860       870       880       890       

     900       910       920       930       940         
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       900       910       920       930       940       

>>NP_061724 (OMIM: 606316) protocadherin alpha-10 isofor  (948 aa)
 initn: 2431 init1: 2431 opt: 4967  Z-score: 3929.3  bits: 738.4 E(85289): 4e-212
Smith-Waterman score: 4967; 82.1% identity (91.6% similar) in 942 aa overlap (9-949:8-948)

               10        20        30        40        50        60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               ::.  : : ::::  :::::::::::: :::.::::::::::::::::::::
NP_061  MVSRCSCLGVQCLLLSLLLLAAWEVGSGQLHYSVYEEARHGTFVGRIAQDLGLELAELV
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
       ::::::::: :::::::::::::::::::::::::::.:.:::::::::::::::::::.
NP_061 QRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSVECSIHLEVIVDRPLQVFHVD
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
       ::::::::::: ::. :::: : ::.  :::::::::::::. :::::::.:: :::: :
NP_061 VEVKDINDNPPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVL
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
       :  ..  . :   :.:.: ::::..:.:.::::::::::::.::.: ::. :::.::: :
NP_061 DIINKKDKDKFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAP
     180       190       200       210       220       230         

              250       260       270       280        290         
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNG
        ::.  :.:...:: ...:::..:::.: :::.: :. ::. : . :. :. : ... .:
NP_061 IFDRPVYEVKMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERTG
     240       250       260       270       280       290         

     300       310       320       330       340       350         
pF1KB3 EVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVR
       :..:: ..:.:... :.:.:..::::.:::.::::: ::.:: ::::::: ::::::::.
NP_061 EIKVNDAIDFEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPVK
     300       310       320       330       340       350         

     360       370       380       390       400       410         
pF1KB3 EDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWA
       :::: .::::::::::.:::.:::::::::::::::::::.::::::::::::::: : :
NP_061 EDAQVGTVIALISVSDHDSGANGQVTCSLTPHVPFKLVSTYKNYYSLVLDSALDRERVSA
     360       370       380       390       400       410         

     420       430       440       450       460       470         
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
       ::::::::::::: ::::: ::::::::::::::::: ::::::::::::::::::::: 
NP_061 YELVVTARDGGSPPLWATASVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAW
     420       430       440       450       460       470         

     480       490       500       510       520       530         
pF1KB3 DADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       ::::::::::::::::::::.:.::::::::::::::::::::::::::::::::::::.
NP_061 DADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDG
     480       490       500       510       520       530         

     540       550       560       570       580       590         
pF1KB3 GVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDAD
       :::::.::.::::::::::::::::::. ::::::::..:: ::: ::::::::::::::
NP_061 GVPPLGSNLTLQVFVLDENDNAPALLASPAGSAGGAVSELVLRSVVAGHVVAKVRAVDAD
     540       550       560       570       580       590         

     600       610       620       630       640       650         
pF1KB3 SGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
       :::::::::::: :: :.:::::::::::::::::::::.::::.::::::::::::.::
NP_061 SGYNAWLSYELQSAAVGARIPFRVGLYTGEISTTRALDETDSPRQRLLVLVKDHGEPSLT
     600       610       620       630       640       650         

     660       670       680       690       700       710         
pF1KB3 ATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTA
       :::::::::::..::::::::. .:.: ::.::::::::::::::.::::::::::::::
NP_061 ATATVLVSLVEGSQAPKASSRASVGVA-PEVALVDVNVYLIIAICAVSSLLVLTLLLYTA
     660       670       680        690       700       710        

     720       730       740       750       760       770         
pF1KB3 LWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGL
       :  ::.::::::.: ::::::: ::::::::::::::::: :: ::.::::::::::   
NP_061 LRCSAAPTEGACGPVKPTLVCSSAVGSWSYSQQRRQRVCSGEGLPKADLMAFSPSLPPCP
      720       730       740       750       760       770        

     780       790       800       810       820       830         
pF1KB3 NKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
         . .:: :  :..:  .::::::::::::::::::::::::::::::::::::::::::
NP_061 MVDVDGEDQSIGGDHSRKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
      780       790       800       810       820       830        

     840       850       860       870       880       890         
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
      840       850       860       870       880       890        

     900       910       920       930       940         
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
      900       910       920       930       940        

>>NP_061728 (OMIM: 606308) protocadherin alpha-2 isoform  (948 aa)
 initn: 4966 init1: 2662 opt: 4963  Z-score: 3926.1  bits: 737.8 E(85289): 6e-212
Smith-Waterman score: 4963; 81.6% identity (91.5% similar) in 945 aa overlap (6-949:6-948)

               10        20        30        40        50        60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
            ::: :.    : ::::  ::::::::.::: :::::::::::::::::::: :::
NP_061 MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
        :::::::: :::::::::::::::::::::::::::.:::::::.:::::::::::::.
NP_061 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
       :::::::::::.: .  . . . ::.  ::::::::::::::  ::::.:.::..:.: :
NP_061 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
       :  .: .  . :::.: ::::::.: :.::::.:::::::::::::..:..:::::::.:
NP_061 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP
              190       200       210       220       230       240

              250       260       270       280        290         
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNG
        : .: :::.:.::.:. :::.::::.: ::: :.:..::: : .. . .  ::.:  .:
NP_061 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KB3 EVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVR
       :.:..: ::::: : :.:.: ::::::: :.::: . ....: :::.:::..::::::. 
NP_061 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KB3 EDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWA
       :.:. .::::::.:::::::.::.::::::::::::::::::::::::::::::::.: :
NP_061 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA
              370       380       390       400       410       420

     420       430       440       450       460       470         
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
       ::::::::::::::::::. ::.:::::::::::::::::::::::::::::::::::: 
NP_061 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW
              430       440       450       460       470       480

     480       490       500       510       520       530         
pF1KB3 DADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       ::::::::::::::::::.:.::::::::::::::::::::::::::.::::::::::::
NP_061 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA
              490       500       510       520       530       540

     540       550       560       570       580       590         
pF1KB3 GVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDAD
       :::::.::::::::::::::::::::: .::.:.:::..::: :::::::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

     600       610       620       630       640       650         
pF1KB3 SGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
       :::::::::::: ..:..::::::::::::::::::::::::::::::::::::::::::
NP_061 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
              610       620       630       640       650       660

     660       670       680       690       700       710         
pF1KB3 ATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTA
       :::::::::::::::::::::. .:::. ::.:::::::::::::.::::::::.:::::
NP_061 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA
              670       680       690       700       710       720

     720       730       740       750       760       770         
pF1KB3 LWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGL
       :  :. ::::: :::::::::: ::::::::::::::::: : :::::::::::::  : 
NP_061 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP
              730       740       750       760       770       780

     780       790       800       810       820       830         
pF1KB3 NKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
       .. ::  .:   :.. :.::::::::::::::::::::::::::::::::::::::::::
NP_061 DSAEE--KQLSESEYVGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
                790       800       810       820       830        

     840       850       860       870       880       890         
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
      840       850       860       870       880       890        

     900       910       920       930       940         
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
      900       910       920       930       940        

>>NP_061729 (OMIM: 606309) protocadherin alpha-3 isoform  (950 aa)
 initn: 4940 init1: 3727 opt: 4940  Z-score: 3907.9  bits: 734.5 E(85289): 6.2e-211
Smith-Waterman score: 4940; 81.2% identity (91.0% similar) in 946 aa overlap (6-949:6-950)

               10        20        30        40        50        60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
            :.  :.  : : ::::   ::::::::::::::::::::::::::::::::::::
NP_061 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
        :::::::: :::::::::::::::::::::::::::.:::::::::::::::::::::.
NP_061 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
       ::::::::: ::: .  ..:.:.::.:  ::: :::::::::  :.:::: :...:::.:
NP_061 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
       :   : ..:: :.:.:::.:.:: ::.  ::.:: ::::::::::..: . ::::::: :
NP_061 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP
              190       200       210       220       230       240

              250       260       270       280        290         
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNG
        :... ::: :.::: . :::. .:::: ::::: ...::. . .. .    : ::  ::
NP_061 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KB3 EVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVR
       .. :.:..:.::.: :.:.:.:::::.:::. :::: .::.: ::: ::... :::::: 
NP_061 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KB3 EDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWA
       ::.  :::::::::::::::::::::::::::::::::::::::::::::: ::::.: :
NP_061 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA
              370       380       390       400       410       420

     420       430       440       450       460       470         
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
       ::::::::::::::::::: :::::::::::::::.: ::::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR
              430       440       450       460       470       480

     480       490       500       510       520       530         
pF1KB3 DADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       ::::::::::::::::::.:.:::::::::::::::::::::::::::::::::::::::
NP_061 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

     540       550       560       570       580       590         
pF1KB3 GVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDAD
       :::::.::::::::::::::::::::  ..:. ::::..:::::::::::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

     600       610       620       630       640       650         
pF1KB3 SGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
       :::::::::::::..::.:::::::::::::::::::::.:.:::::::::::::::.::
NP_061 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT
              610       620       630       640       650       660

     660       670       680       690       700       710         
pF1KB3 ATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTA
       ::::::::::::::::::::.. :::..:::::::::::::.:::.::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

     720       730       740       750       760       770         
pF1KB3 LWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLP-LG
       :  :: :::: :.::::::::: :::::::::::.::::: :: :::::::::::::   
NP_061 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP
              730       740       750       760       770       780

      780       790       800       810       820       830        
pF1KB3 LNKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
       .....: :.:.   .  ..:::::::::::::::::::::::::::::::::::::::::
NP_061 ISRDRE-EKQDVDVDLSAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
               790       800       810       820       830         

      840       850       860       870       880       890        
pF1KB3 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
     840       850       860       870       880       890         

      900       910       920       930       940         
pF1KB3 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
     900       910       920       930       940       950




949 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:53:28 2016 done: Thu Nov  3 12:53:30 2016
 Total Scan time: 13.300 Total Display time:  0.430

Function used was FASTA [36.3.4 Apr, 2011]
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