Result of FASTA (ccds) for pF1KB3329
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3329, 949 aa
  1>>>pF1KB3329 949 - 949 aa - 949 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3916+/-0.00101; mu= 12.2915+/- 0.061
 mean_var=144.6223+/-27.892, 0's: 0 Z-trim(108.9): 194  B-trim: 5 in 1/52
 Lambda= 0.106649
 statistics sampled from 10292 (10488) to 10292 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.322), width:  16
 Scan time:  4.870

The best scores are:                                      opt bits E(32554)
CCDS47284.1 PCDHA11 gene_id:56138|Hs108|chr5       ( 949) 6213 968.5       0
CCDS75326.1 PCDHA11 gene_id:56138|Hs108|chr5       ( 810) 5168 807.7       0
CCDS4240.1 PCDHA13 gene_id:56136|Hs108|chr5        ( 950) 5035 787.3       0
CCDS54919.1 PCDHA8 gene_id:56140|Hs108|chr5        ( 950) 5034 787.1       0
CCDS47281.1 PCDHA6 gene_id:56142|Hs108|chr5        ( 950) 5003 782.3       0
CCDS54913.1 PCDHA1 gene_id:56147|Hs108|chr5        ( 950) 5000 781.9       0
CCDS54916.1 PCDHA4 gene_id:56144|Hs108|chr5        ( 947) 4991 780.5       0
CCDS54921.1 PCDHA10 gene_id:56139|Hs108|chr5       ( 948) 4967 776.8       0
CCDS54914.1 PCDHA2 gene_id:56146|Hs108|chr5        ( 948) 4963 776.2       0
CCDS54915.1 PCDHA3 gene_id:56145|Hs108|chr5        ( 950) 4940 772.6       0
CCDS54920.1 PCDHA9 gene_id:9752|Hs108|chr5         ( 950) 4876 762.8       0
CCDS47285.1 PCDHA12 gene_id:56137|Hs108|chr5       ( 941) 3968 623.1 7.9e-178
CCDS75327.1 PCDHA12 gene_id:56137|Hs108|chr5       ( 792) 3934 617.8 2.6e-176
CCDS54917.1 PCDHA5 gene_id:56143|Hs108|chr5        ( 936) 3931 617.4 4.1e-176
CCDS54918.1 PCDHA7 gene_id:56141|Hs108|chr5        ( 937) 3929 617.1  5e-176
CCDS75325.1 PCDHA10 gene_id:56139|Hs108|chr5       ( 844) 3924 616.3 7.9e-176
CCDS64269.1 PCDHA2 gene_id:56146|Hs108|chr5        ( 808) 3918 615.3 1.4e-175
CCDS54912.1 PCDHA1 gene_id:56147|Hs108|chr5        ( 686) 2608 413.7  6e-115
CCDS47282.1 PCDHA6 gene_id:56142|Hs108|chr5        ( 686) 2604 413.1 9.2e-115
CCDS34255.1 PCDHA10 gene_id:56139|Hs108|chr5       ( 685) 2602 412.8 1.1e-114
CCDS4261.1 PCDHGC3 gene_id:5098|Hs108|chr5         ( 934) 1979 317.0   1e-85
CCDS75339.1 PCDHGB5 gene_id:56101|Hs108|chr5       ( 923) 1975 316.4 1.6e-85
CCDS54928.1 PCDHGB4 gene_id:8641|Hs108|chr5        ( 923) 1946 312.0 3.5e-84
CCDS47293.1 PCDHGB7 gene_id:56099|Hs108|chr5       ( 929) 1946 312.0 3.5e-84
CCDS75348.1 PCDHGC3 gene_id:5098|Hs108|chr5        ( 863) 1943 311.5 4.6e-84
CCDS75346.1 PCDHGA12 gene_id:26025|Hs108|chr5      ( 820) 1936 310.4 9.3e-84
CCDS4260.1 PCDHGA12 gene_id:26025|Hs108|chr5       ( 932) 1936 310.4   1e-83
CCDS75345.1 PCDHGA11 gene_id:56105|Hs108|chr5      ( 837) 1925 308.7   3e-83
CCDS47294.1 PCDHGA11 gene_id:56105|Hs108|chr5      ( 935) 1925 308.7 3.3e-83
CCDS75343.1 PCDHGA10 gene_id:56106|Hs108|chr5      ( 850) 1922 308.2 4.2e-83
CCDS47292.1 PCDHGA10 gene_id:56106|Hs108|chr5      ( 936) 1922 308.3 4.6e-83
CCDS75344.1 PCDHGB7 gene_id:56099|Hs108|chr5       ( 808) 1920 307.9   5e-83
CCDS75333.1 PCDHGA5 gene_id:56110|Hs108|chr5       ( 813) 1919 307.8 5.6e-83
CCDS75331.1 PCDHGA4 gene_id:56111|Hs108|chr5       ( 851) 1919 307.8 5.8e-83
CCDS54925.1 PCDHGA5 gene_id:56110|Hs108|chr5       ( 931) 1919 307.8 6.3e-83
CCDS75335.1 PCDHGA6 gene_id:56109|Hs108|chr5       ( 818) 1917 307.5   7e-83
CCDS54926.1 PCDHGA6 gene_id:56109|Hs108|chr5       ( 932) 1917 307.5 7.8e-83
CCDS75330.1 PCDHGB1 gene_id:56104|Hs108|chr5       ( 810) 1914 307.0 9.6e-83
CCDS54923.1 PCDHGB1 gene_id:56104|Hs108|chr5       ( 927) 1914 307.0 1.1e-82
CCDS58979.2 PCDHGA4 gene_id:56111|Hs108|chr5       ( 962) 1914 307.1 1.1e-82
CCDS54922.1 PCDHGA1 gene_id:56114|Hs108|chr5       ( 931) 1900 304.9 4.8e-82
CCDS47289.1 PCDHGA2 gene_id:56113|Hs108|chr5       ( 932) 1900 304.9 4.8e-82
CCDS54929.1 PCDHGB6 gene_id:56100|Hs108|chr5       ( 930) 1899 304.7 5.3e-82
CCDS54924.1 PCDHGB2 gene_id:56103|Hs108|chr5       ( 931) 1896 304.3 7.3e-82
CCDS75332.1 PCDHGB2 gene_id:56103|Hs108|chr5       ( 811) 1892 303.6   1e-81
CCDS75350.1 PCDHGC5 gene_id:56097|Hs108|chr5       ( 878) 1883 302.3 2.8e-81
CCDS4263.1 PCDHGC5 gene_id:56097|Hs108|chr5        ( 944) 1883 302.3 2.9e-81
CCDS75336.1 PCDHGA7 gene_id:56108|Hs108|chr5       ( 817) 1881 301.9 3.3e-81
CCDS75338.1 PCDHGA8 gene_id:9708|Hs108|chr5        ( 820) 1881 301.9 3.3e-81
CCDS54927.1 PCDHGA7 gene_id:56108|Hs108|chr5       ( 932) 1881 302.0 3.6e-81


>>CCDS47284.1 PCDHA11 gene_id:56138|Hs108|chr5            (949 aa)
 initn: 6213 init1: 6213 opt: 6213  Z-score: 5172.8  bits: 968.5 E(32554):    0
Smith-Waterman score: 6213; 100.0% identity (100.0% similar) in 949 aa overlap (1-949:1-949)

               10        20        30        40        50        60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMSIKPNGRHLFTLDQNNGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMSIKPNGRHLFTLDQNNGE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 VRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVRE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 DAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 ELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 ADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 VPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 GYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTA
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 TATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTAL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 WWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 WWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGLN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB3 KEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPT
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB3 VSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQ
              850       860       870       880       890       900

              910       920       930       940         
pF1KB3 EPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
              910       920       930       940         

>>CCDS75326.1 PCDHA11 gene_id:56138|Hs108|chr5            (810 aa)
 initn: 5168 init1: 5168 opt: 5168  Z-score: 4304.8  bits: 807.7 E(32554):    0
Smith-Waterman score: 5168; 100.0% identity (100.0% similar) in 797 aa overlap (1-797:1-797)

               10        20        30        40        50        60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMSIKPNGRHLFTLDQNNGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMSIKPNGRHLFTLDQNNGE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 VRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVRE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 DAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWAY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 ELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 ADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 VPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDADS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 GYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALTA
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 TATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTAL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 WWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 WWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGLN
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB3 KEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPT
       :::::::::::::::::                                           
CCDS75 KEEEGERQEPGSNHPGQVSFLQIPPIRKCM                              
              790       800       810                              

>>CCDS4240.1 PCDHA13 gene_id:56136|Hs108|chr5             (950 aa)
 initn: 5026 init1: 3756 opt: 5035  Z-score: 4193.3  bits: 787.3 E(32554):    0
Smith-Waterman score: 5035; 81.7% identity (92.4% similar) in 945 aa overlap (10-949:7-950)

               10           20        30        40        50       
pF1KB3 MFGFQRRGLGTPR---LQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELA
                : ::   : ::::.:  ::.::::::::: :::::::::::::::::::::
CCDS42    MLSSWQGGPRPRQLLLWLLILAAWETGSGQLHYSVPEEAKHGTFVGRIAQDLGLELA
                  10        20        30        40        50       

        60        70        80        90       100       110       
pF1KB3 ELVQRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVF
       ::: :::::::: :::::::::::::::::::::::::::.:::::::::::::::::::
CCDS42 ELVPRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVF
        60        70        80        90       100       110       

       120       130       140       150       160       170       
pF1KB3 HVNVEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEY
       ::.:.:.:::::::.:   .....::::.  ..::::.:::::::  :. :::::. :.:
CCDS42 HVEVKVRDINDNPPIFPESKKRIIIAESRPPETRFPLDGASDADIGVNSALTYRLDPNDY
       120       130       140       150       160       170       

       180       190       200       210       220       230       
pF1KB3 FSLDSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVND
       :.::. .. .:.. :::.:.:.::::.  : .:::::.:::::::::::.::. .:::::
CCDS42 FTLDAQNSLEQMSSLSLVLRKTLDREEIQEHSLLLTASDGGKPELTGTVQLLITILDVND
       180       190       200       210       220       230       

       240       250       260       270       280        290      
pF1KB3 NDPEFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQ
       : ::: .: :::...::: . :::.:::::: :.:.::...::.   . :   . ::.. 
CCDS42 NAPEFYQSVYKVTVLENAFNGTLVIKLNATDPDDGTNGDIVYSFRRPVWPAVVYAFTINP
       240       250       260       270       280       290       

        300       310       320       330       340       350      
pF1KB3 NNGEVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSL
       ::::.:..: ::.::.:.:.: :.:.:::. :::::::. ::.::.:::.:::..:::::
CCDS42 NNGEIRTKGKLDFEEKKLYEISVEAVDKGNIPMAGHCTLLVEVLDVNDNAPEVTITSLSL
       300       310       320       330       340       350       

        360       370       380       390       400       410      
pF1KB3 PVREDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDREN
       :.:::.:::..:::::::::::: ::::::.::::::::::::.:::::::::::::::.
CCDS42 PIREDTQPSAIIALISVSDRDSGSNGQVTCTLTPHVPFKLVSTYKNYYSLVLDSALDRES
       360       370       380       390       400       410       

        420       430       440       450       460       470      
pF1KB3 VWAYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTV
       : :::::::::::::::::::: ::: :::::::::::::::::::::::::::::::::
CCDS42 VSAYELVVTARDGGSPSLWATASVSVGVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTV
       420       430       440       450       460       470       

        480       490       500       510       520       530      
pF1KB3 SARDADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSA
       ::.::::::::::::::::::.:.::::::::::::::::::::::::::::::::::::
CCDS42 SAQDADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSA
       480       490       500       510       520       530       

        540       550       560       570       580       590      
pF1KB3 RDAGVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAV
       ::.:::::.::::::::::::::::::::.  ::::::.:..:.::::::::::::::::
CCDS42 RDSGVPPLGSNVTLQVFVLDENDNAPALLTPGAGSAGGTVSELMPRSVGAGHVVAKVRAV
       540       550       560       570       580       590       

        600       610       620       630       640       650      
pF1KB3 DADSGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEP
       ::::::::::::::: :: :.::::::::::::::::: :::.:.:.:::::::::::::
CCDS42 DADSGYNAWLSYELQLAAVGARIPFRVGLYTGEISTTRPLDEVDAPHHRLLVLVKDHGEP
       600       610       620       630       640       650       

        660       670       680       690       700       710      
pF1KB3 ALTATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLL
       :::::::::.:::::::::.::::. :::..:::::::::::::::::.:::::::::::
CCDS42 ALTATATVLLSLVESGQAPQASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLL
       660       670       680       690       700       710       

        720       730       740       750       760       770      
pF1KB3 YTALWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLP
       ::::  :: :::::::::::::::: :.:::::::::: :::: ::: ::::::::::::
CCDS42 YTALRCSAPPTEGACAPGKPTLVCSSAAGSWSYSQQRRPRVCSGEGPHKTDLMAFSPSLP
       720       730       740       750       760       770       

        780        790       800       810       820       830     
pF1KB3 LGLNKEE-EGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPD
         :.. :  :.:.:  :.   .::::::::::::::::::::::::::::::::::::::
CCDS42 PCLGSAEGTGQREED-SECLKEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPD
       780       790        800       810       820       830      

         840       850       860       870       880       890     
pF1KB3 QQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAI
        840       850       860       870       880       890      

         900       910       920       930       940         
pF1KB3 ISIRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ISIRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
        900       910       920       930       940       950

>>CCDS54919.1 PCDHA8 gene_id:56140|Hs108|chr5             (950 aa)
 initn: 5039 init1: 3758 opt: 5034  Z-score: 4192.4  bits: 787.1 E(32554):    0
Smith-Waterman score: 5034; 81.6% identity (91.8% similar) in 948 aa overlap (4-949:3-950)

                10        20        30        40        50         
pF1KB3 MFGFQRRG-LGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAEL
          .. :: ::. :: : ::::  :.:::::::::: :::::::::::::::::::::::
CCDS54  MDYHWRGELGSWRLLLLLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAEL
                10        20        30        40        50         

      60        70        80        90       100       110         
pF1KB3 VQRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHV
       : :::::::: : :::::.:::::::::::::::::::.:::::::::::::::::::::
CCDS54 VPRLFRVASKRHRDLLEVSLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHV
      60        70        80        90       100       110         

     120       130       140       150       160       170         
pF1KB3 NVEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFS
       .:::::.::::::: ...:::...::.. :::::::::::::.  :..::::::...:: 
CCDS54 DVEVKDVNDNPPVFRVKDQKLFVSESRMPDSRFPLEGASDADVGANSVLTYRLSSHDYFM
     120       130       140       150       160       170         

     180       190       200       210       220       230         
pF1KB3 LDSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDND
       ::  ... . : . :.:.:::::: .:  .:.:::::::::::::::.::: ::::::: 
CCDS54 LDVNSKNDENKLVELVLRKSLDREDAPAHHLFLTATDGGKPELTGTVQLLVTVLDVNDNA
     180       190       200       210       220       230         

     240       250       260       270       280        290        
pF1KB3 PEFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNN
       : :..:::.: ..::: . : :.::::.: :::.:: ..::. : ..      :..:.:.
CCDS54 PTFEQSEYEVRIFENADNGTTVIKLNASDPDEGANGAISYSFNSLVETMVIDHFSIDRNT
     240       250       260       270       280       290         

      300       310       320       330       340       350        
pF1KB3 GEVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPV
       ::. . :.::.:....::: ..::::: ::::::::: :.::: ::: ::.:.:::::::
CCDS54 GEIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPV
     300       310       320       330       340       350         

      360       370       380       390       400       410        
pF1KB3 REDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVW
       ::::: .::::::::.: :::.:::::::: :::::::::::::::::::::::::: : 
CCDS54 REDAQFGTVIALISVNDLDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRERVS
     360       370       380       390       400       410         

      420       430       440       450       460       470        
pF1KB3 AYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
       :::::::::::::::::::: .::::::::::::::::::::::::::::::::::::::
CCDS54 AYELVVTARDGGSPSLWATASLSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
     420       430       440       450       460       470         

      480       490       500       510       520       530        
pF1KB3 RDADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD
       :::::::::::::::::::.:.:.::::.:::.:::::::::::::::::::::::::::
CCDS54 RDADAQENALVSYSLVERRVGERSLSSYISVHTESGKVYALQPLDHEELELLQFQVSARD
     480       490       500       510       520       530         

      540       550       560       570       580       590        
pF1KB3 AGVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDA
       ::::::.::::::::::::::::::::  ..:..:::..:::::::::::::::::::::
CCDS54 AGVPPLGSNVTLQVFVLDENDNAPALLEPRVGGTGGAASKLVPRSVGAGHVVAKVRAVDA
     540       550       560       570       580       590         

      600       610       620       630       640       650        
pF1KB3 DSGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPAL
       ::::::::::::::::.. :::::::::::::::::.:::::::::::::::::::::::
CCDS54 DSGYNAWLSYELQPAASSPRIPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPAL
     600       610       620       630       640       650         

      660       670       680       690       700       710        
pF1KB3 TATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYT
       ::::::::::::::::::::::  ::. .:::::::::::::::::.:::::::::::::
CCDS54 TATATVLVSLVESGQAPKASSRQSAGVLGPEAALVDVNVYLIIAICAVSSLLVLTLLLYT
     660       670       680       690       700       710         

      720       730       740       750       760       770        
pF1KB3 ALWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLG
       ::  :: ::::.:  :::::::: ::::::::::. ::::: ::::::::::::: ::  
CCDS54 ALRCSALPTEGGCRAGKPTLVCSSAVGSWSYSQQQPQRVCSGEGPPKTDLMAFSPCLPPD
     720       730       740       750       760       770         

      780       790       800       810       820       830        
pF1KB3 LNKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
       :.. . ::.:. . .:  .:::::::::::::::::::::::::::::::::::::::::
CCDS54 LGSVDVGEEQDLNVDHGLKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
     780       790       800       810       820       830         

      840       850       860       870       880       890        
pF1KB3 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
     840       850       860       870       880       890         

      900       910       920       930       940         
pF1KB3 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
     900       910       920       930       940       950

>>CCDS47281.1 PCDHA6 gene_id:56142|Hs108|chr5             (950 aa)
 initn: 5008 init1: 3742 opt: 5003  Z-score: 4166.7  bits: 782.3 E(32554):    0
Smith-Waterman score: 5003; 81.7% identity (92.1% similar) in 946 aa overlap (9-949:9-950)

               10        20        30        40        50        60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               ::   : : ::::  :.:::::::::: ::::::::::::::::::::::::
CCDS47 MVFTPEDRLGKQCLLLPLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
        ::::.::: . :::::::::::::::::::::::::.:::::::::::::::::::::.
CCDS47 PRLFRMASKDREDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
       :::.:::::::.: ..::..:: ::.  :: ::::::::::.  :..:::.::..:::.:
CCDS47 VEVRDINDNPPLFPVEEQRVLIYESRLPDSVFPLEGASDADVGSNSILTYKLSSSEYFGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
       :   :. . :...:.::::::::..:  ::.:::::::::::::::.::: ::::::: :
CCDS47 DVKINSDDNKQIGLLLKKSLDREEAPAHNLFLTATDGGKPELTGTVQLLVTVLDVNDNAP
              190       200       210       220       230       240

              250       260       270       280         290        
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMSIKPNG--RHLFTLDQNN
        :..:::.: ..::: . : :..:::.:::::.:: ..::. :.       : :..:.:.
CCDS47 TFEQSEYEVRIFENADNGTTVIRLNASDRDEGANGAISYSFNSLVAAMVIDH-FSIDRNT
              250       260       270       280       290          

      300       310       320       330       340       350        
pF1KB3 GEVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPV
       ::. . :.::.:....::: ..::::: ::::::::: :.::: ::: ::.:.:::::::
CCDS47 GEIVIRGNLDFEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPV
     300       310       320       330       340       350         

      360       370       380       390       400       410        
pF1KB3 REDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVW
       ::::: .::::::::.: :::.::::.::::::::::::::::::::::::::::::.: 
CCDS47 REDAQFGTVIALISVNDLDSGANGQVNCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVS
     360       370       380       390       400       410         

      420       430       440       450       460       470        
pF1KB3 AYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
       :::::::::::::::::::: .::::::.:::::::::::::::::::::::::::::::
CCDS47 AYELVVTARDGGSPSLWATASLSVEVADMNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
     420       430       440       450       460       470         

      480       490       500       510       520       530        
pF1KB3 RDADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD
       :::::::::::::::::::.:.::::::.:::::::::::::::::::::::::::::::
CCDS47 RDADAQENALVSYSLVERRVGERALSSYISVHAESGKVYALQPLDHEELELLQFQVSARD
     480       490       500       510       520       530         

      540       550       560       570       580       590        
pF1KB3 AGVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDA
       ::::::.::::::::::::::::::::: ..:..::::..:::::.:::.::::::::::
CCDS47 AGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVSELVPRSLGAGQVVAKVRAVDA
     540       550       560       570       580       590         

      600       610       620       630       640       650        
pF1KB3 DSGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPAL
       :::::::::::::: :...:.:::::::::::::::.:::::::::::::::::::::::
CCDS47 DSGYNAWLSYELQPPASSARFPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPAL
     600       610       620       630       640       650         

      660       670       680       690       700       710        
pF1KB3 TATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYT
       ::::::::::::::::::::::. .:::.:::::::::::::::::.:::::::::::::
CCDS47 TATATVLVSLVESGQAPKASSRASVGAAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYT
     660       670       680       690       700       710         

      720       730       740       750       760       770        
pF1KB3 ALWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSL---
       ::  :: ::::::.  ::::::: ::::::::::::::::: ::::: :::::::::   
CCDS47 ALRCSAPPTEGACTADKPTLVCSSAVGSWSYSQQRRQRVCSGEGPPKMDLMAFSPSLSPC
     720       730       740       750       760       770         

         780       790       800       810       820       830     
pF1KB3 PLGLNKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPD
       :. ..:   .: :. . .: ..::::::::::::::::::::::::::::::::::::::
CCDS47 PIMMGK---AENQDLNEDHDAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPD
     780          790       800       810       820       830      

         840       850       860       870       880       890     
pF1KB3 QQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAI
        840       850       860       870       880       890      

         900       910       920       930       940         
pF1KB3 ISIRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ISIRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
        900       910       920       930       940       950

>>CCDS54913.1 PCDHA1 gene_id:56147|Hs108|chr5             (950 aa)
 initn: 4995 init1: 3729 opt: 5000  Z-score: 4164.2  bits: 781.9 E(32554):    0
Smith-Waterman score: 5000; 81.9% identity (91.7% similar) in 948 aa overlap (4-949:3-950)

                10        20        30        40        50         
pF1KB3 MFGFQRRG-LGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAEL
          :.::: ::.  : ::::::  :::::::::::. :::::::::::.:::::::::::
CCDS54  MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAEL
                10        20        30        40        50         

      60        70        80        90       100       110         
pF1KB3 VQRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHV
       : :::::::::: ::::::::::::::::::::::::  :::::::::.:.:::::::::
CCDS54 VPRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSAECSIHLELIADRPLQVFHV
      60        70        80        90       100       110         

     120       130       140       150       160       170         
pF1KB3 NVEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFS
       .:.:::::::::::  ::: ..: ::.  .::::.:::.::::  :::::: :: ..:::
CCDS54 EVKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFS
     120       130       140       150       160       170         

     180       190       200       210       220       230         
pF1KB3 LDSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDND
       ::  .. .  : : : :.: ::::.::::.::::::::::::: :::.::. ::::::: 
CCDS54 LDVEASDELSKSLWLELRKYLDREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNA
     180       190       200       210       220       230         

     240       250       260       270       280        290        
pF1KB3 PEFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNN
       : ::.. :.: :.:..:. :::  :::.: ::::::::..:. : :. . .. : .:...
CCDS54 PLFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSS
     240       250       260       270       280       290         

      300       310       320       330       340       350        
pF1KB3 GEVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPV
       ::.:.   :::::.: :.:.:.:.:::.:::..:: : :..::.:::.::.::::: ::.
CCDS54 GEIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPI
     300       310       320       330       340       350         

      360       370       380       390       400       410        
pF1KB3 REDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVW
       ::::  :::::::.:::::::.:::::::: ::::::::::::::::::::::::::.. 
CCDS54 REDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESLS
     360       370       380       390       400       410         

      420       430       440       450       460       470        
pF1KB3 AYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
       .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSA
     420       430       440       450       460       470         

      480       490       500       510       520       530        
pF1KB3 RDADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARD
       :::::::::::::::::::.:.::::.:::::::::::::::::::::::::::::::::
CCDS54 RDADAQENALVSYSLVERRVGERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARD
     480       490       500       510       520       530         

      540       550       560       570       580       590        
pF1KB3 AGVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDA
       ::::::.::::::::::::::::::::: ..:.. :::..:::: :::::::::::::::
CCDS54 AGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDA
     540       550       560       570       580       590         

      600       610       620       630       640       650        
pF1KB3 DSGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPAL
       ::::::::::::::::::.:::::::::::::::::.:::::  :.::::::::::::::
CCDS54 DSGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPAL
     600       610       620       630       640       650         

      660       670       680       690       700       710        
pF1KB3 TATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYT
       ::::::::::::::::::::::. .:.:.:::::::::::::::::.:::::::::::::
CCDS54 TATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYT
     660       670       680       690       700       710         

      720       730       740       750       760       770        
pF1KB3 ALWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLG
       ::  :. ::::: .::::::::: :.:::: :::::::::: :::::::::::::.:  .
CCDS54 ALRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPS
     720       730       740       750       760       770         

      780       790       800       810       820       830        
pF1KB3 LNKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
       ::  :..:. : . .  :.:::::::::::::::::::::::::::::::::::::::::
CCDS54 LNTSERNEQPEANLDLSGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
     780       790       800       810       820       830         

      840       850       860       870       880       890        
pF1KB3 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
     840       850       860       870       880       890         

      900       910       920       930       940         
pF1KB3 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
     900       910       920       930       940       950

>>CCDS54916.1 PCDHA4 gene_id:56144|Hs108|chr5             (947 aa)
 initn: 3980 init1: 2688 opt: 4991  Z-score: 4156.7  bits: 780.5 E(32554):    0
Smith-Waterman score: 4991; 81.9% identity (91.5% similar) in 943 aa overlap (8-949:8-947)

               10        20        30        40        50        60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
              :  . :: : ::::  ::.:.::::::::::::::::::::::::::::::::
CCDS54 MEFSWGSGQESRRLLLLLLLLAAWEAGNGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
        :::::::: .: ::::::::::::::::::::::: .:::::::::::::::::::::.
CCDS54 PRLFRVASKGRGGLLEVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDRPLQVFHVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
       :::.:::::::::   ...: ::::.  :::::::::::::: :::::::::: ::::::
CCDS54 VEVRDINDNPPVFPATQKNLSIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
       ..: . . .: :.:::.::::::..::. :.:::::::::::::::.::. :::.::: :
CCDS54 EKPPDDELVKGLGLILRKSLDREEAPEIFLVLTATDGGKPELTGTVQLLITVLDANDNAP
              190       200       210       220       230       240

              250       260       270       280        290         
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNG
        ::.. ::: :.::. . :::.::::.: :::.::...::. . :.:: .  : .:  .:
CCDS54 AFDRTIYKVRLLENVPNGTLVIKLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITG
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KB3 EVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVR
       .. :.: .:.::.: :.: :.. :::  :..::: : ::. :.::: :..   :::::.:
CCDS54 QIIVKGYIDFEESKSYEIIVEGIDKGQLPLSGHCRVIVEVEDNNDNVPDLEFKSLSLPIR
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KB3 EDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWA
       :::  .::::::::::.: :::: :::::: :::::::::::::::::::::::::.: :
CCDS54 EDAPLGTVIALISVSDKDMGVNGLVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRESVSA
              370       380       390       400       410       420

     420       430       440       450       460       470         
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
       ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: 
CCDS54 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW
              430       440       450       460       470       480

     480       490       500       510       520       530         
pF1KB3 DADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       ::::::::::::::::::.:.::::::::::::::::::::::::::::::::::.::::
CCDS54 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVTARDA
              490       500       510       520       530       540

     540       550       560       570       580       590         
pF1KB3 GVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDAD
       :::::.::::::::::::::::::::: .::..::::..::: :::.:::::::::::::
CCDS54 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGGTGGAVSELVPWSVGVGHVVAKVRAVDAD
              550       560       570       580       590       600

     600       610       620       630       640       650         
pF1KB3 SGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
       :::::::::::::..::.:::::::::::::::::::::.:.::::::::::::::::::
CCDS54 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPALT
              610       620       630       640       650       660

     660       670       680       690       700       710         
pF1KB3 ATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTA
       :::::::::::::::::::::.:.::..:.:::::::::::::::.::::::::::::::
CCDS54 ATATVLVSLVESGQAPKASSRALVGAVGPDAALVDVNVYLIIAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

     720       730       740       750       760       770         
pF1KB3 LWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGL
       :  :: :::::::::::::::: :::::::::::: :::: :::::::::::::::: . 
CCDS54 LRCSALPTEGACAPGKPTLVCSSAVGSWSYSQQRRPRVCSGEGPPKTDLMAFSPSLPDSR
              730       740       750       760       770       780

     780       790       800       810       820       830         
pF1KB3 NKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
       ..:.. .  : .    ..::::::::::::::::::::::::::::::::::::::::::
CCDS54 DREDQLQTTEESF---AKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
              790          800       810       820       830       

     840       850       860       870       880       890         
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       840       850       860       870       880       890       

     900       910       920       930       940         
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       900       910       920       930       940       

>>CCDS54921.1 PCDHA10 gene_id:56139|Hs108|chr5            (948 aa)
 initn: 2431 init1: 2431 opt: 4967  Z-score: 4136.7  bits: 776.8 E(32554):    0
Smith-Waterman score: 4967; 82.1% identity (91.6% similar) in 942 aa overlap (9-949:8-948)

               10        20        30        40        50        60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               ::.  : : ::::  :::::::::::: :::.::::::::::::::::::::
CCDS54  MVSRCSCLGVQCLLLSLLLLAAWEVGSGQLHYSVYEEARHGTFVGRIAQDLGLELAELV
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
       ::::::::: :::::::::::::::::::::::::::.:.:::::::::::::::::::.
CCDS54 QRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSVECSIHLEVIVDRPLQVFHVD
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
       ::::::::::: ::. :::: : ::.  :::::::::::::. :::::::.:: :::: :
CCDS54 VEVKDINDNPPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVL
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
       :  ..  . :   :.:.: ::::..:.:.::::::::::::.::.: ::. :::.::: :
CCDS54 DIINKKDKDKFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAP
     180       190       200       210       220       230         

              250       260       270       280        290         
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNG
        ::.  :.:...:: ...:::..:::.: :::.: :. ::. : . :. :. : ... .:
CCDS54 IFDRPVYEVKMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERTG
     240       250       260       270       280       290         

     300       310       320       330       340       350         
pF1KB3 EVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVR
       :..:: ..:.:... :.:.:..::::.:::.::::: ::.:: ::::::: ::::::::.
CCDS54 EIKVNDAIDFEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPVK
     300       310       320       330       340       350         

     360       370       380       390       400       410         
pF1KB3 EDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWA
       :::: .::::::::::.:::.:::::::::::::::::::.::::::::::::::: : :
CCDS54 EDAQVGTVIALISVSDHDSGANGQVTCSLTPHVPFKLVSTYKNYYSLVLDSALDRERVSA
     360       370       380       390       400       410         

     420       430       440       450       460       470         
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
       ::::::::::::: ::::: ::::::::::::::::: ::::::::::::::::::::: 
CCDS54 YELVVTARDGGSPPLWATASVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAW
     420       430       440       450       460       470         

     480       490       500       510       520       530         
pF1KB3 DADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       ::::::::::::::::::::.:.::::::::::::::::::::::::::::::::::::.
CCDS54 DADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDG
     480       490       500       510       520       530         

     540       550       560       570       580       590         
pF1KB3 GVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDAD
       :::::.::.::::::::::::::::::. ::::::::..:: ::: ::::::::::::::
CCDS54 GVPPLGSNLTLQVFVLDENDNAPALLASPAGSAGGAVSELVLRSVVAGHVVAKVRAVDAD
     540       550       560       570       580       590         

     600       610       620       630       640       650         
pF1KB3 SGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
       :::::::::::: :: :.:::::::::::::::::::::.::::.::::::::::::.::
CCDS54 SGYNAWLSYELQSAAVGARIPFRVGLYTGEISTTRALDETDSPRQRLLVLVKDHGEPSLT
     600       610       620       630       640       650         

     660       670       680       690       700       710         
pF1KB3 ATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTA
       :::::::::::..::::::::. .:.: ::.::::::::::::::.::::::::::::::
CCDS54 ATATVLVSLVEGSQAPKASSRASVGVA-PEVALVDVNVYLIIAICAVSSLLVLTLLLYTA
     660       670       680        690       700       710        

     720       730       740       750       760       770         
pF1KB3 LWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGL
       :  ::.::::::.: ::::::: ::::::::::::::::: :: ::.::::::::::   
CCDS54 LRCSAAPTEGACGPVKPTLVCSSAVGSWSYSQQRRQRVCSGEGLPKADLMAFSPSLPPCP
      720       730       740       750       760       770        

     780       790       800       810       820       830         
pF1KB3 NKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
         . .:: :  :..:  .::::::::::::::::::::::::::::::::::::::::::
CCDS54 MVDVDGEDQSIGGDHSRKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
      780       790       800       810       820       830        

     840       850       860       870       880       890         
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
      840       850       860       870       880       890        

     900       910       920       930       940         
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
      900       910       920       930       940        

>>CCDS54914.1 PCDHA2 gene_id:56146|Hs108|chr5             (948 aa)
 initn: 4966 init1: 2662 opt: 4963  Z-score: 4133.4  bits: 776.2 E(32554):    0
Smith-Waterman score: 4963; 81.6% identity (91.5% similar) in 945 aa overlap (6-949:6-948)

               10        20        30        40        50        60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
            ::: :.    : ::::  ::::::::.::: :::::::::::::::::::: :::
CCDS54 MASSIRRGRGAWTRLLSLLLLAAWEVGSGQLRYSVPEEAKHGTFVGRIAQDLGLELEELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
        :::::::: :::::::::::::::::::::::::::.:::::::.:::::::::::::.
CCDS54 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHVEVIVDRPLQVFHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
       :::::::::::.: .  . . . ::.  ::::::::::::::  ::::.:.::..:.: :
CCDS54 VEVKDINDNPPIFPMTVKTIRFPESRLLDSRFPLEGASDADIGVNALLSYKLSSSEFFFL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
       :  .: .  . :::.: ::::::.: :.::::.:::::::::::::..:..:::::::.:
CCDS54 DIQANDELSESLSLVLGKSLDREETAEVNLLLVATDGGKPELTGTVQILIKVLDVNDNEP
              190       200       210       220       230       240

              250       260       270       280        290         
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNG
        : .: :::.:.::.:. :::.::::.: ::: :.:..::: : .. . .  ::.:  .:
CCDS54 TFAQSVYKVKLLENTANGTLVVKLNASDADEGPNSEIVYSLGSDVSSTIQTKFTIDPISG
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KB3 EVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVR
       :.:..: ::::: : :.:.: ::::::: :.::: . ....: :::.:::..::::::. 
CCDS54 EIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGHCKISLKLVDINDNTPEVSITSLSLPIS
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KB3 EDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWA
       :.:. .::::::.:::::::.::.::::::::::::::::::::::::::::::::.: :
CCDS54 ENASLGTVIALITVSDRDSGTNGHVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRESVSA
              370       380       390       400       410       420

     420       430       440       450       460       470         
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
       ::::::::::::::::::. ::.:::::::::::::::::::::::::::::::::::: 
CCDS54 YELVVTARDGGSPSLWATTSVSIEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW
              430       440       450       460       470       480

     480       490       500       510       520       530         
pF1KB3 DADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       ::::::::::::::::::.:.::::::::::::::::::::::::::.::::::::::::
CCDS54 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA
              490       500       510       520       530       540

     540       550       560       570       580       590         
pF1KB3 GVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDAD
       :::::.::::::::::::::::::::: .::.:.:::..::: :::::::::::::::::
CCDS54 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGTAAGAVSELVPWSVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

     600       610       620       630       640       650         
pF1KB3 SGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
       :::::::::::: ..:..::::::::::::::::::::::::::::::::::::::::::
CCDS54 SGYNAWLSYELQLGTGSARIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
              610       620       630       640       650       660

     660       670       680       690       700       710         
pF1KB3 ATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTA
       :::::::::::::::::::::. .:::. ::.:::::::::::::.::::::::.:::::
CCDS54 ATATVLVSLVESGQAPKASSRAWVGAAGSEATLVDVNVYLIIAICAVSSLLVLTVLLYTA
              670       680       690       700       710       720

     720       730       740       750       760       770         
pF1KB3 LWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLPLGL
       :  :. ::::: :::::::::: ::::::::::::::::: : :::::::::::::  : 
CCDS54 LRCSVPPTEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGP
              730       740       750       760       770       780

     780       790       800       810       820       830         
pF1KB3 NKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
       .. ::  .:   :.. :.::::::::::::::::::::::::::::::::::::::::::
CCDS54 DSAEE--KQLSESEYVGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
                790       800       810       820       830        

     840       850       860       870       880       890         
pF1KB3 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
      840       850       860       870       880       890        

     900       910       920       930       940         
pF1KB3 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
      900       910       920       930       940        

>>CCDS54915.1 PCDHA3 gene_id:56145|Hs108|chr5             (950 aa)
 initn: 4940 init1: 3727 opt: 4940  Z-score: 4114.3  bits: 772.6 E(32554):    0
Smith-Waterman score: 4940; 81.2% identity (91.0% similar) in 946 aa overlap (6-949:6-950)

               10        20        30        40        50        60
pF1KB3 MFGFQRRGLGTPRLQLWLLLLEFWEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
            :.  :.  : : ::::   ::::::::::::::::::::::::::::::::::::
CCDS54 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QRLFRVASKTHGDLLEVNLQNGILFVNSRIDREELCGQSAECSIHLEVIVDRPLQVFHVN
        :::::::: :::::::::::::::::::::::::::.:::::::::::::::::::::.
CCDS54 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VEVKDINDNPPVFSLREQKLLIAESKQSDSRFPLEGASDADIEENALLTYRLSKNEYFSL
       ::::::::: ::: .  ..:.:.::.:  ::: :::::::::  :.:::: :...:::.:
CCDS54 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DSPTNGKQIKRLSLILKKSLDREKTPELNLLLTATDGGKPELTGTVRLLVQVLDVNDNDP
       :   : ..:: :.:.:::.:.:: ::.  ::.:: ::::::::::..: . ::::::: :
CCDS54 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP
              190       200       210       220       230       240

              250       260       270       280        290         
pF1KB3 EFDKSEYKVSLMENAAKETLVLKLNATDRDEGVNGEVTYSLMS-IKPNGRHLFTLDQNNG
        :... ::: :.::: . :::. .:::: ::::: ...::. . .. .    : ::  ::
CCDS54 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KB3 EVRVNGTLDYEENKFYKIEVQATDKGTPPMAGHCTVWVEILDTNDNSPEVAVTSLSLPVR
       .. :.:..:.::.: :.:.:.:::::.:::. :::: .::.: ::: ::... :::::: 
CCDS54 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KB3 EDAQPSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSALDRENVWA
       ::.  :::::::::::::::::::::::::::::::::::::::::::::: ::::.: :
CCDS54 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA
              370       380       390       400       410       420

     420       430       440       450       460       470         
pF1KB3 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAR
       ::::::::::::::::::: :::::::::::::::.: ::::::::::::::::::::::
CCDS54 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR
              430       440       450       460       470       480

     480       490       500       510       520       530         
pF1KB3 DADAQENALVSYSLVERRLGDRALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
       ::::::::::::::::::.:.:::::::::::::::::::::::::::::::::::::::
CCDS54 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
              490       500       510       520       530       540

     540       550       560       570       580       590         
pF1KB3 GVPPLSSNVTLQVFVLDENDNAPALLATQAGSAGGAVNKLVPRSVGAGHVVAKVRAVDAD
       :::::.::::::::::::::::::::  ..:. ::::..:::::::::::::::::::::
CCDS54 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD
              550       560       570       580       590       600

     600       610       620       630       640       650         
pF1KB3 SGYNAWLSYELQPAAGGSRIPFRVGLYTGEISTTRALDEADSPRHRLLVLVKDHGEPALT
       :::::::::::::..::.:::::::::::::::::::::.:.:::::::::::::::.::
CCDS54 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT
              610       620       630       640       650       660

     660       670       680       690       700       710         
pF1KB3 ATATVLVSLVESGQAPKASSRTLAGAASPEAALVDVNVYLIIAICVVSSLLVLTLLLYTA
       ::::::::::::::::::::.. :::..:::::::::::::.:::.::::::::::::::
CCDS54 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA
              670       680       690       700       710       720

     720       730       740       750       760       770         
pF1KB3 LWWSATPTEGACAPGKPTLVCSRAVGSWSYSQQRRQRVCSEEGPPKTDLMAFSPSLP-LG
       :  :: :::: :.::::::::: :::::::::::.::::: :: :::::::::::::   
CCDS54 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP
              730       740       750       760       770       780

      780       790       800       810       820       830        
pF1KB3 LNKEEEGERQEPGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
       .....: :.:.   .  ..:::::::::::::::::::::::::::::::::::::::::
CCDS54 ISRDRE-EKQDVDVDLSAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQW
               790       800       810       820       830         

      840       850       860       870       880       890        
pF1KB3 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISI
     840       850       860       870       880       890         

      900       910       920       930       940         
pF1KB3 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
     900       910       920       930       940       950




949 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:53:27 2016 done: Thu Nov  3 12:53:28 2016
 Total Scan time:  4.870 Total Display time:  0.440

Function used was FASTA [36.3.4 Apr, 2011]
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