GENSCAN 1.0	Date run:  3-Nov-116	Time: 12:46:52

Sequence gi568815581f:48897746_49149441 : 251696 bp : 46.42% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  10759  11075  317  0  2  108   89   288 0.999  25.71
 1.02 Intr +  13063  13135   73  1  1   90   95    69 0.998   7.21
 1.03 Intr +  15089  15276  188  1  2   71   90   180 0.999  14.99
 1.04 Intr +  18331  18442  112  1  1   89  110    89 0.999  11.58
 1.05 Intr +  23415  23527  113  2  2   38   92    53 0.969  -0.12
 1.06 Intr +  25102  25192   91  1  1   97   90   138 0.952  14.90
 1.07 Term +  29219  29389  171  1  0  116   41   119 0.958   7.83
 1.08 PlyA +  31290  31295    6                               1.05

 2.15 PlyA -  32373  32368    6                               1.05
 2.14 Term -  32867  32730  138  2  0  152   42    69 0.999   6.66
 2.13 Intr -  33972  33898   75  0  0  106   72   110 0.983  10.91
 2.12 Intr -  35601  35460  142  2  1   47   69   222 0.692  16.56
 2.11 Intr -  38497  38425   73  2  1  114   39    19 0.853  -1.94
 2.10 Intr -  39379  39275  105  2  0   87   78   104 0.974   9.49
 2.09 Intr -  43317  43179  139  0  1  105   58   239 0.892  22.64
 2.08 Intr -  44812  44723   90  1  0   72   42   119 0.976   5.89
 2.07 Intr -  46230  46180   51  0  0  123  111    33 0.996   8.20
 2.06 Intr -  47093  46936  158  0  2   46   83    82 0.056   3.23
 2.05 Intr -  56666  56644   23  1  2   94   90    27 0.074   0.69
 2.04 Intr -  63242  63141  102  1  0   51   91   115 0.864   7.39
 2.03 Intr -  64074  63982   93  2  0   92  105    79 0.998   9.08
 2.02 Intr -  66735  66565  171  2  0  102   61   167 0.998  14.46
 2.01 Init -  69487  69402   86  1  2   73   91   196 0.999  16.69
 2.00 Prom -  72477  72438   40                              -5.46

 3.00 Prom +  82475  82514   40                              -3.46
 3.01 Init + 100001 100175  175  1  1  110  111   465 0.970  50.51
 3.02 Intr + 101364 101424   61  1  1   94   97    65 0.789   5.79
 3.03 Intr + 127873 127921   49  1  1  109  100    44 0.967   6.38
 3.04 Intr + 128721 128772   52  2  1   94  116    54 0.992   7.28
 3.05 Intr + 134165 134228   64  0  1  116   73    96 0.896   8.68
 3.06 Intr + 140423 140704  282  2  0   83   89   388 0.896  34.93
 3.07 Intr + 142212 142346  135  0  0   97  111   112 0.999  14.08
 3.08 Intr + 143633 143755  123  2  0   81   71   102 0.994   7.50
 3.09 Intr + 144497 144632  136  2  1   64   75   171 0.999  13.97
 3.10 Intr + 145683 145805  123  2  0  134   78    16 0.954   5.98
 3.11 Intr + 146222 146341  120  1  0   74   53   200 0.637  15.79
 3.12 Intr + 148145 148276  132  1  0   94  101   179 0.864  20.64
 3.13 Intr + 148515 148628  114  2  0  106   88   212 0.998  23.64
 3.14 Intr + 150818 150949  132  1  0   46   83    74 0.861   3.54
 3.15 Term + 151607 151699   93  1  0  106   47    95 0.886   5.03
 3.16 PlyA + 152019 152024    6                               1.05

 4.00 Prom + 152370 152409   40                              -4.16
 4.01 Init + 166897 166943   47  0  2   62   94    39 0.193   2.09
 4.02 Intr + 180273 180345   73  0  1   51   80    73 0.163   2.21
 4.03 Intr + 184799 184918  120  1  0   65   72    41 0.025   0.89
 4.04 Intr + 234978 235061   84  2  0   32  100   162 0.405  11.82
 4.05 Intr + 243527 243702  176  1  2   44   85    96 0.236   3.64
 4.06 Term + 244290 244431  142  0  1   86   38   104 0.555   2.60
 4.07 PlyA + 244981 244986    6                              -0.45

 5.03 PlyA - 245094 245089    6                               1.05
 5.02 Term - 247861 247749  113  2  2   22   55    83 0.334  -2.88
 5.01 Intr - 251011 250732  280  1  1   32   84   310 0.372  22.05

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  46989  46936   54  0  0   62   83    79 0.929   6.12


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581f:48897746_49149441|GENSCAN_predicted_peptide_1|354_aa
MAESPTEEAATAGAGAAGPGASSVAGVVGVSGSGGGFGPPFLPDVWAAAAAAGGAGGPGS
GLAPLPGLPPSAAAHGAALLSHWDPTLSSDWDGERTAPQCLLRIKRDIMSIYKEPPPGMF
VVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPN
FYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERHPGDSKNY
NECIRHETIRVAVCDMMEGKCPCPEPLRGVMEKSFLEYYDFYEVACKDRLHLQGQTMQDP
FGEKRGHFDYQSLLMRLGLIRQKVLERLHNENAEMDSDSSSSGTETDLHGSLRV

>gi568815581f:48897746_49149441|GENSCAN_predicted_CDS_1|1065_bp
atggcggagagtccgactgaggaggcggcaacggcgggcgccggggcggcgggccccggg
gcgagcagcgttgctggtgttgttggcgttagcggcagcggcggcgggttcgggccgcct
ttcctgccggatgtgtgggcggcggcggcggcagcgggcggggccgggggcccggggagc
ggcctggctccgctgcccgggctcccgccctcagccgctgcccacggggccgcgctgctt
agccactgggaccccacgctcagctccgactgggacggcgagcgcaccgcgccgcagtgt
ctactccggatcaagcgggatatcatgtccatttataaggagcctcctccaggaatgttc
gttgtacctgatactgttgacatgactaagattcatgcattgatcacaggcccatttgac
actccttatgaagggggtttcttcctgttcgtgtttcggtgtccgcccgactatcccatc
cacccacctcgggtcaaactgatgacaacgggcaataacacagtgaggtttaaccccaac
ttctaccgcaatgggaaagtctgcttgagtattctaggtacatggactggacctgcctgg
agcccagcccagagcatctcctcagtgctcatctctatccagtccctgatgactgagaac
ccctatcacaatgagcccggctttgaacaggagagacatccaggagacagcaaaaactat
aatgaatgtatccggcacgagaccatcagagttgcagtctgtgacatgatggaaggaaag
tgtccctgtcctgaacccctacgaggggtgatggagaagtcctttctggagtattacgac
ttctacgaggtggcctgcaaagatcgcctgcaccttcaaggccaaactatgcaggaccct
tttggagagaagcggggccactttgactaccagtccctcttgatgcgcctgggactgata
cgtcagaaagtgctggagaggctccataatgagaatgcagaaatggactctgatagcagt
tcatctgggacagagacagaccttcatgggagcctgagggtttag

>gi568815581f:48897746_49149441|GENSCAN_predicted_peptide_2|481_aa
MVATKTFALLLLSLFLAVGLGEKKEGHFSALPSLPVGSHAKVSSPQPRGPRYAEGTFISD
YSIAMDKIHQQDFVNWLLAQKGKKNDWKHNITQREARALELASQANRKEEEAVEPQSSPA
KNPSDEDLLRDLLIQELLACLLDQTNLCRLRLRNRRERDDARLGLPPWGAGGGVRDVETR
GPGSRAARGPRVGMHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQPFPSLYVLRVYP
VIVIGEEVEEAVKQENGAMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGV
DPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQ
DVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSE
IKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREAL
P

>gi568815581f:48897746_49149441|GENSCAN_predicted_CDS_2|1446_bp
atggtggccacgaagacctttgctctgctgctgctgtccctgttcctggcagtgggacta
ggagagaagaaagagggtcacttcagcgctctcccctccctgcctgttggatctcatgct
aaggtgagcagccctcaacctcgaggccccaggtacgcggaagggactttcatcagtgac
tacagtattgccatggacaagattcaccaacaagactttgtgaactggctgctggcccaa
aaggggaagaagaatgactggaaacacaacatcacccagagggaggctcgggcgctggag
ctggccagtcaagctaataggaaggaggaggaggcagtggagccacagagctccccagcc
aagaaccccagcgatgaagatttgctgcgggacttgctgattcaagagctgttggcctgc
ttgctggatcagacaaacctctgcaggctcaggctgaggaaccgtcgtgaaagagatgac
gcgcggctcgggcttccgccttggggagccggcggcggagtccgggacgtggagacccgg
ggtcccggcagccgggcggcccgcgggcccagggtggggatgcaccgccgcggggtggga
gctggcgccatcgccaagaagaaacttgcagaggccaagtataaggagcgagggacggtc
ttggctgaggaccagctagcccagcccttcccttctctgtacgtgctccgagtttaccca
gtgattgtgattggggaagaagtggaggaagccgttaagcaggaaaatggggctatgtca
aagcagttggacatgttcaagaccaacctggaggaatttgccagcaaacacaagcaggag
atccggaagaatcctgagttccgtgtgcagttccaggacatgtgtgcaaccattggcgtg
gatccgctggcctctggaaaaggattttggtctgagatgctgggcgtgggggacttctat
tacgaactaggtgtccaaattatcgaagtgtgcctggcgctgaagcatcggaatggaggt
ctgataactttggaggaactacatcaacaggtgttgaagggaaggggcaagttcgcccag
gatgtcagtcaagatgacctgatcagagccatcaagaaactaaaggcacttggcactggc
ttcggcatcatccctgtgggcggcacttacctcattcagtctgttccagctgagctcaat
atggatcacaccgtggtgctgcagctggcagagaagaatggctacgtgactgtcagtgag
atcaaagccagtcttaaatgggagaccgagcgagcgcggcaagtgctggaacacctgctg
aaggaagggttggcgtggctggacttacaggccccaggggaggcccactactggctgcca
gctctcttcactgacctctactcccaggagattacagctgaggaggccagagaagccctc
ccctga

>gi568815581f:48897746_49149441|GENSCAN_predicted_peptide_3|596_aa
MNKLYIGNLNESVTPADLEKVFAEHKISYSGQFLVKSGYAFVDCPDEHWAMKAIETFSGK
VELQGKRLEIEHSVPKKQRSRKIQIRNIPPQLRWEVLDSLLAQYGTVENCEQVNTESETA
VVNVTYSNREQTRQAIMKLNGHQLENHALKVSYIPDEQIAQGPENGRRGGFGSRGQPRQG
SPVAAGAPAKQQQVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAA
EKAISVHSTPEGCSSACKMILEIMHKEAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLK
KVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEIMKKVREAYENDVAAMSL
QSHLIPGLNLAAVGLFPASSSAVPPPPSSVTGAAPYSSFMQAPEQEMVQVFIPAQAVGAI
IGKKGQHIKQLSRFASASIKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGK
GGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQTYYSFSWGIKMKRGFVMM
SSKLRPSTTGVPKPRATDWYRATQQEMAQRKIRDILAQVKQQHQKGQSNQAQARRK

>gi568815581f:48897746_49149441|GENSCAN_predicted_CDS_3|1791_bp
atgaacaagctttacatcggcaacctcaacgagagcgtgacccccgcggacttggagaaa
gtgtttgcggagcacaagatctcctacagcggccagttcttggtcaaatccggctacgcc
ttcgtggactgcccggacgagcactgggcgatgaaggccatcgaaactttctccgggaaa
gtagaattacaaggaaaacgcttagagattgaacattcggtgcccaaaaaacaaaggagc
cggaaaattcaaatccgaaatattccaccccagctccgatgggaagtactggacagcctg
ctggctcagtatggtacagtagagaactgtgagcaagtgaacaccgagagtgagacggca
gtggtgaatgtcacctattccaaccgggagcagaccaggcaagccatcatgaagctgaat
ggccaccagttggagaaccatgccctgaaggtctcctacatccccgatgagcagatagca
cagggacctgagaatgggcgccgagggggctttggctctcggggtcagccccgccagggc
tcacctgtggcagcgggggccccagccaagcagcagcaagtggacatcccccttcggctc
ctggtgcccacccagtatgtgggtgccattattggcaaggagggggccaccatccgcaac
atcacaaaacagacccagtccaagatagacgtgcataggaaggagaacgcaggtgcagct
gaaaaagccatcagtgtgcactccacccctgagggctgctcctccgcttgtaagatgatc
ttggagattatgcataaagaggctaaggacaccaaaacggctgacgaggttcccctgaag
atcctggcccataataactttgtagggcgtctcattggcaaggaaggacggaacctgaag
aaggtagagcaagataccgagacaaaaatcaccatctcctcgttgcaagaccttaccctt
tacaaccctgagaggaccatcactgtgaagggggccatcgagaattgttgcagggccgag
caggaaataatgaagaaagttcgggaggcctatgagaatgatgtggctgccatgagcctg
cagtctcacctgatccctggcctgaacctggctgctgtaggtcttttcccagcttcatcc
agcgcagtcccgccgcctcccagcagcgttactggggctgctccctatagctcctttatg
caggctcccgagcaggagatggtgcaggtgtttatccccgcccaggcagtgggcgccatc
atcggcaagaaggggcagcacatcaaacagctctcccggtttgccagcgcctccatcaag
gctcagggaagaatctatggcaaactcaaggaggagaacttctttggtcccaaggaggaa
gtgaagctggagacccacatacgtgtgccagcatcagcagctggccgggtcattggcaaa
ggtggaaaaacggtgaacgagttgcagaatttgacggcagctgaggtggtagtaccaaga
gaccagacccctgatgagaacgaccaggtcatcgtgaaaatcatcggacatttctatgcc
agtcagacatattattccttttcctggggtattaaaatgaagcgtggatttgtgatgatg
tcttctaagttacgaccctctacaacaggagtccccaaaccccgggccacggactggtac
cgggccacacagcaggagatggctcaacggaagatccgagacatcctggcccaggttaag
cagcagcatcagaagggacagagtaaccaggcccaggcacggaggaagtga

>gi568815581f:48897746_49149441|GENSCAN_predicted_peptide_4|213_aa
MNISEINEVIRSALPSISSFFLDAGQELKNHRMRVQTIAQNPSATCEGGFWKMTDQMKQR
SAVPAEASLDYSVCQQSDTWGGAVGGLAARLRDIRQSEGGGIRDDFGRILVIILVLGIVG
FMFGSMFLQAVFSSPKPELPSPAPGVQKLKLLPEERLRNLFSYDGIWLFPKNQCKCEANK
EQGGYNFQDAYGQSDLPAVKARRQAEFEHFQRR

>gi568815581f:48897746_49149441|GENSCAN_predicted_CDS_4|642_bp
atgaacatcagtgaaatcaatgaagtaatcagatctgcgctgcccagcatatcctcattc
ttcctggatgcaggacaagagctcaagaaccaccgaatgcgggtacaaactatagcacag
aacccttctgccacttgtgaaggaggcttctggaagatgacagaccagatgaagcagaga
tcagcagttccagctgaggcttctttagactactcagtctgccaacaatcagacacatgg
ggcggggcagtcggcggcctggctgctaggctccgtgacatccggcagtctgagggcggc
gggattcgggatgacttcgggcggatattggtcataatcctggtacttggcattgttgga
tttatgttcggaagcatgttccttcaagcagtgttcagcagccccaagccagaactccca
agtcctgccccgggtgtccagaagctgaagcttctgcctgaggaacgtctcaggaacctc
ttttcctacgatggaatctggctgttcccgaaaaatcagtgcaaatgtgaagccaacaaa
gagcagggaggttacaactttcaggatgcctatggccagagcgacctcccagcggtgaaa
gcgaggagacaggctgaatttgaacactttcagaggaggtaa

>gi568815581f:48897746_49149441|GENSCAN_predicted_peptide_5|130_aa
EGVTVAKKDVHMPKHLELADKKVPDLHVMKVVQSLKSGGFVQERFAWRHFYAYLTNKGIQ
YLHDDLHLPPEIVLATLCHSCPETGRSLPEGLEGKKTLPAEVLAEGKGNTEWVVKEDNQY
QLRPCDQLQK

>gi568815581f:48897746_49149441|GENSCAN_predicted_CDS_5|393_bp
gagggagtcacggtggccaagaaggatgtccacatgcctaagcacctggagctggcagac
aagaaggtgcccgaccttcatgtcatgaaggttgtgcagtctctcaagtccggaggcttt
gtgcaggaacggtttgcctggagacatttctacgcgtaccttaccaacaagggtatccag
tatctccatgatgacctccatctgcccccagagattgtgcttgccaccttatgccacagc
tgtccagagactggcaggtctctgcctgaaggtctggagggaaaaaaaacattacctgct
gaggtgcttgctgaaggcaaggggaatacagaatgggtagtaaaagaagataatcaatac
cagctacgaccatgtgaccagctgcagaaatga