GENSCAN 1.0 Date run: 3-Nov-116 Time: 12:39:39 Sequence gi568815591r:81652115_81869971 : 217857 bp : 35.14% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.20 PlyA - 909 904 6 1.05 1.19 Term - 7752 7559 194 1 2 107 55 100 0.072 5.20 1.18 Intr - 11013 10917 97 0 1 68 34 58 0.059 -2.94 1.17 Intr - 16150 15965 186 1 0 -13 89 158 0.134 4.76 1.16 Intr - 50643 50482 162 0 0 78 76 66 0.714 3.65 1.15 Intr - 53421 53276 146 1 2 52 83 153 0.973 10.28 1.14 Intr - 53639 53533 107 1 2 90 69 91 0.999 6.34 1.13 Intr - 54313 54173 141 0 0 71 92 121 0.997 9.35 1.12 Intr - 58129 58033 97 2 1 76 91 15 0.953 -1.25 1.11 Intr - 65251 65118 134 0 2 62 81 144 0.813 10.47 1.10 Intr - 68733 68631 103 1 1 69 74 20 0.743 -2.99 1.09 Intr - 73903 73776 128 0 2 42 85 180 0.849 12.50 1.08 Intr - 77665 77491 175 2 1 66 89 135 0.858 9.48 1.07 Intr - 91357 91239 119 0 2 94 115 78 0.993 10.29 1.06 Intr - 93006 92886 121 1 1 35 93 130 0.922 6.83 1.05 Intr - 100148 100006 143 1 2 36 94 205 0.715 14.98 1.04 Intr - 105189 105075 115 1 1 62 110 74 0.996 5.59 1.03 Intr - 106690 106578 113 0 2 78 88 37 0.360 1.80 1.02 Intr - 110758 110593 166 2 1 44 108 33 0.406 -1.00 1.01 Init - 117857 117770 88 2 1 82 92 226 0.994 21.25 1.00 Prom - 122054 122015 40 -6.45 2.07 PlyA - 122094 122089 6 1.05 2.06 Term - 125847 125749 99 0 0 80 31 91 0.186 -0.25 2.05 Intr - 137622 137489 134 1 2 40 54 95 0.328 0.74 2.04 Intr - 151599 151432 168 1 0 84 110 85 0.282 9.30 2.03 Intr - 176116 176019 98 0 2 38 95 71 0.519 1.53 2.02 Intr - 177226 177053 174 0 0 26 71 106 0.123 0.83 2.01 Init - 191701 191553 149 1 2 83 60 85 0.100 4.81 2.00 Prom - 212865 212826 40 -3.65 3.03 PlyA - 213266 213261 6 1.05 3.02 Term - 215801 215689 113 0 2 24 43 131 0.672 -0.06 3.01 Intr - 217769 217640 130 2 1 85 54 107 0.785 6.35 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815591r:81652115_81869971|GENSCAN_predicted_peptide_1|844_aa MWVTKLLPALLLQHVLLHLLLLPIAIPYAEGQRKRRNTIHEFKKSAKTTLIKIDPALKIK TKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGHEFDLYE NKDYIRNCIIGKGRSYKGTVSITKSGIKCQPWSSMIPHEHSFLPSSYRGKDLQENYCRNP RGEEGGPWCFTSNPEVRYEVCDIPQCSEVECMTCNGESYRGLMDHTESGKICQRWDHQTP HRHKFLPERYPDKGFDDNYCRNPDGQPRPWCYTLDPHTRWEYCAIKTCADNTMNDTDVPL ETTECIQGQGEGYRGTVNTIWNGIPCQRWDSQYPHEHDMTPENFKCKDLRENYCRNPDGS ESPWCFTTDPNIRVGYCSQIPNCDMSHGQDCYRGNGKNYMGNLSQTRSGLTCSMWDKNME DLHRHIFWEPDASKLNENYCRNPDDDAHGPWCYTGNPLIPWDYCPISRYPVISCAKTKQL RVVNGIPTRTNIGWMVSLRYRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEGSD LVLMKLARPAVLDDFVSTIDLPNYGCTIPEKTSCSVYGWGYTGLINYDGLLRVAHLYIMG NEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCA IPNRPGIFVRVAYYAKWIHKIILTYKHLLPNNFHVAPFSQPKTCGLDSPYGPARAPWYRT EAQMLLIEQISGLVIPGFPSSELGTHIQEISEQRLPLMLGTWAPWLKSERGVSSECLKMS SDGLDSGVPSALSFLFCVGGKTQLGRARVPELPSNTPMVSTSTNPDEGGCRQLLSKDIEV SVGG >gi568815591r:81652115_81869971|GENSCAN_predicted_CDS_1|2535_bp atgtgggtgaccaaactcctgccagccctgctgctgcagcatgtcctcctgcatctcctc ctgctccccatcgccatcccctatgcagagggacaaaggaaaagaagaaatacaattcat gaattcaaaaaatcagcaaagactaccctaatcaaaatagatccagcactgaagataaaa accaaaaaagtgaatactgcagaccaatgtgctaatagatgtactaggaataaaggactt ccattcacttgcaaggcttttgtttttgataaagcaagaaaacaatgcctctggttcccc ttcaatagcatgtcaagtggagtgaaaaaagaatttggccatgaatttgacctctatgaa aacaaagactacattagaaactgcatcattggtaaaggacgcagctacaagggaacagta tctatcactaagagtggcatcaaatgtcagccctggagttccatgataccacacgaacac agctttttgccttcgagctatcggggtaaagacctacaggaaaactactgtcgaaatcct cgaggggaagaagggggaccctggtgtttcacaagcaatccagaggtacgctacgaagtc tgtgacattcctcagtgttcagaagttgaatgcatgacctgcaatggggagagttatcga ggtctcatggatcatacagaatcaggcaagatttgtcagcgctgggatcatcagacacca caccggcacaaattcttgcctgaaagatatcccgacaagggctttgatgataattattgc cgcaatcccgatggccagccgaggccatggtgctatactcttgaccctcacacccgctgg gagtactgtgcaattaaaacatgcgctgacaatactatgaatgacactgatgttcctttg gaaacaactgaatgcatccaaggtcaaggagaaggctacaggggcactgtcaataccatt tggaatggaattccatgtcagcgttgggattctcagtatcctcacgagcatgacatgact cctgaaaatttcaagtgcaaggacctacgagaaaattactgccgaaatccagatgggtct gaatcaccctggtgttttaccactgatccaaacatccgagttggctactgctcccaaatt ccaaactgtgatatgtcacatggacaagattgttatcgtgggaatggcaaaaattatatg ggcaacttatcccaaacaagatctggactaacatgttcaatgtgggacaagaacatggaa gacttacatcgtcatatcttctgggaaccagatgcaagtaagctgaatgagaattactgc cgaaatccagatgatgatgctcatggaccctggtgctacacgggaaatccactcattcct tgggattattgccctatttctcgttatcccgtaatatcttgtgccaaaacgaaacaattg cgagttgtaaatgggattccaacacgaacaaacataggatggatggttagtttgagatac agagacttgaaagattatgaagcttggcttggaattcatgatgtccacggaagaggagat gagaaatgcaaacaggttctcaatgtttcccagctggtatatggccctgaaggatcagat ctggttttaatgaagcttgccaggcctgctgtcctggatgattttgttagtacgattgat ttacctaattatggatgcacaattcctgaaaagaccagttgcagtgtttatggctggggc tacactggattgatcaactatgatggcctattacgagtggcacatctctatataatggga aatgagaaatgcagccagcatcatcgagggaaggtgactctgaatgagtctgaaatatgt gctggggctgaaaagattggatcaggaccatgtgagggggattatggtggcccacttgtt tgtgagcaacataaaatgagaatggttcttggtgtcattgttcctggtcgtggatgtgcc attccaaatcgtcctggtatttttgtccgagtagcatattatgcaaaatggatacacaaa attattttaacatataagcaccttctccctaacaacttccacgtggcaccattcagtcaa cccaaaacttgtggccttgattctccatatggcccagcccgtgctccatggtacaggaca gaggctcagatgctcctcatagagcaaatctctgggttggtcattcctggattccctagc tcagaactgggaacacacattcaggagatttctgaacagaggctgccactgatgcttgga acttgggccccatggctcaagtcagaacgaggagtaagctctgaatgtctgaagatgtca agtgatgggttagacagtggagtacccagtgccctgagcttcctattctgtgtgggtggg aagacacagctgggtagagctagagtccctgaactgccctcgaataccccaatggtgagc acaagcaccaaccctgatgagggtggctgcaggcagctcctgtcgaaagacatcgaggtg tctgtgggagggtga >gi568815591r:81652115_81869971|GENSCAN_predicted_peptide_2|273_aa MDEARKHHSQQTNTATENQTLHVVTHKWELNNENTWTEGGEHHSLGPVVGQTGSGVNLQQ TPTDLQLRDVTVRRKTNKQKGLTSTSTSTKRTSIPKPHLQVTNIKDKRPTLVVPEGSTKH GKEQPVPDTAKTCQIVKTINATYSKSLQGKAEKKQVVSSKMKLCIKSPAVQNLAFWTFSR ITTASLTANLWDFNAPVKGMVASKRDFLLIFEGYDLLYDSIVILLAKSSGEAARLLIMGG VGKANKQFKDSYNLVLSIVGVLLNVITYSVCKA >gi568815591r:81652115_81869971|GENSCAN_predicted_CDS_2|822_bp atggatgaagctagaaagcatcactctcagcaaactaacacagcgacagaaaaccaaaca cttcatgttgtcactcataagtgggaattgaacaatgagaacacatggacagagggaggg gaacaccactcactggggcctgttgtggggcaaacagggtctggagtgaacctccagcaa actccaacagacctgcagctgagggatgtgactgttagaaggaaaactaacaaacagaaa ggattaacttcaacatcaacatcaacaaaaaggacatctataccaaaaccccatctacag gtcaccaacatcaaagataaaaggcctaccttggtagttcctgaaggaagcactaaacat ggaaaggaacaaccagtaccagacactgcaaaaacatgccaaattgtaaagaccatcaat gctacttattcaaaatctttgcaaggaaaggcagaaaagaaacaagttgtttctagtaaa atgaaactgtgcataaaatccccagcagttcaaaacttggcattctggactttttcacga attacaactgcaagtttaacagccaacctttgggacttcaatgcaccagtgaagggaatg gtagcttcaaaaagagattttctcttgatctttgagggctatgacctgctttatgatagt atagtcattctgttggcaaaatcttctggagaagctgccaggctcctgatcatgggtggt gtgggcaaagcaaacaagcagtttaaggacagctataatctggtgctctccatagtgggt gttctgctgaatgtcatcacttactcagtatgcaaggcataa >gi568815591r:81652115_81869971|GENSCAN_predicted_peptide_3|80_aa TNQKKPAHHVVFIIIITIVMKDFTTTSFANALPSTHATTSDNLSICECDLVWKYGLCRYN RVTMRSYRIRAALQSNAGTR >gi568815591r:81652115_81869971|GENSCAN_predicted_CDS_3|243_bp actaatcagaaaaagccagctcatcatgtggtttttataatcatcatcaccatagtgatg aaagacttcactaccacaagttttgcaaatgccttaccgtccacccatgccaccaccagt gataatttgagtatttgtgaatgtgaccttgtttggaaatacggtctttgcagatataat cgagttactatgaggtcataccggattagggcagcccttcaatccaatgctggaactcgt tag