Result of FASTA (ccds) for pF1KB3107
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3107, 165 aa
  1>>>pF1KB3107 165 - 165 aa - 165 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7607+/-0.000614; mu= 10.9052+/- 0.037
 mean_var=97.5003+/-20.013, 0's: 0 Z-trim(114.7): 120  B-trim: 0 in 0/51
 Lambda= 0.129889
 statistics sampled from 15083 (15224) to 15083 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.468), width:  16
 Scan time:  1.800

The best scores are:                                      opt bits E(32554)
CCDS713.1 LMO4 gene_id:8543|Hs108|chr1             ( 165) 1202 234.3 2.5e-62
CCDS58118.1 LMO1 gene_id:4004|Hs108|chr11          ( 155)  554 112.9 8.6e-26
CCDS44534.1 LMO1 gene_id:4004|Hs108|chr11          ( 156)  554 112.9 8.6e-26
CCDS8678.1 LMO3 gene_id:55885|Hs108|chr12          ( 145)  539 110.1 5.7e-25
CCDS58211.1 LMO3 gene_id:55885|Hs108|chr12         ( 156)  539 110.1 6.1e-25
CCDS58212.1 LMO3 gene_id:55885|Hs108|chr12         ( 163)  539 110.1 6.3e-25
CCDS44567.1 LMO2 gene_id:4005|Hs108|chr11          ( 158)  451 93.6 5.6e-20
CCDS7888.2 LMO2 gene_id:4005|Hs108|chr11           ( 227)  451 93.7 7.4e-20
CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1           ( 390)  427 89.4 2.5e-18
CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1          ( 388)  426 89.2 2.8e-18
CCDS1393.1 LHX9 gene_id:56956|Hs108|chr1           ( 397)  426 89.3 2.9e-18
CCDS6853.1 LHX2 gene_id:9355|Hs108|chr9            ( 406)  417 87.6 9.5e-18
CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9            ( 397)  405 85.3 4.4e-17
CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9            ( 402)  405 85.3 4.5e-17
CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15         ( 359)  395 83.4 1.5e-16
CCDS9171.1 LHX5 gene_id:64211|Hs108|chr12          ( 402)  388 82.1 4.1e-16
CCDS58008.1 LHX8 gene_id:431707|Hs108|chr1         ( 346)  387 81.9 4.1e-16
CCDS30756.1 LHX8 gene_id:431707|Hs108|chr1         ( 356)  387 81.9 4.2e-16
CCDS56583.1 LHX6 gene_id:26468|Hs108|chr9          ( 363)  382 81.0 8.2e-16
CCDS56584.1 LHX6 gene_id:26468|Hs108|chr9          ( 366)  382 81.0 8.3e-16
CCDS6837.2 LHX6 gene_id:26468|Hs108|chr9           ( 377)  382 81.0 8.4e-16
CCDS6838.2 LHX6 gene_id:26468|Hs108|chr9           ( 392)  382 81.0 8.7e-16
CCDS11316.1 LHX1 gene_id:3975|Hs108|chr17          ( 406)  380 80.6 1.2e-15
CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5           ( 349)  376 79.8 1.7e-15
CCDS6866.2 LMX1B gene_id:4010|Hs108|chr9           ( 395)  369 78.6 4.7e-15
CCDS55342.1 LMX1B gene_id:4010|Hs108|chr9          ( 402)  369 78.6 4.8e-15
CCDS55343.1 LMX1B gene_id:4010|Hs108|chr9          ( 406)  369 78.6 4.8e-15
CCDS1247.1 LMX1A gene_id:4009|Hs108|chr1           ( 382)  363 77.4   1e-14


>>CCDS713.1 LMO4 gene_id:8543|Hs108|chr1                  (165 aa)
 initn: 1202 init1: 1202 opt: 1202  Z-score: 1232.4  bits: 234.3 E(32554): 2.5e-62
Smith-Waterman score: 1202; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)

               10        20        30        40        50        60
pF1KB3 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
               70        80        90       100       110       120

              130       140       150       160     
pF1KB3 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS71 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
              130       140       150       160     

>>CCDS58118.1 LMO1 gene_id:4004|Hs108|chr11               (155 aa)
 initn: 638 init1: 554 opt: 554  Z-score: 576.5  bits: 112.9 E(32554): 8.6e-26
Smith-Waterman score: 554; 52.3% identity (78.8% similar) in 132 aa overlap (21-152:21-152)

               10        20        30        40        50        60
pF1KB3 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
                           : ::::. :: ::.:: :.:.:::  ::::.::. .::..
CCDS58 MVLDQEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
       :.. :::...:::: ::.::::..: :.::.. ::: :.::::. ::::: ::.:. : .
CCDS58 GSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQ
               70        80        90       100       110       120

              130       140       150       160     
pF1KB3 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
       :.  ::.:   :. ..:. :   . .:: ..:             
CCDS58 RFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ          
              130       140       150               

>>CCDS44534.1 LMO1 gene_id:4004|Hs108|chr11               (156 aa)
 initn: 638 init1: 554 opt: 554  Z-score: 576.5  bits: 112.9 E(32554): 8.6e-26
Smith-Waterman score: 554; 52.3% identity (78.8% similar) in 132 aa overlap (21-152:22-153)

                10        20        30        40        50         
pF1KB3  MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGD
                            : ::::. :: ::.:: :.:.:::  ::::.::. .::.
CCDS44 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB3 IGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCR
       .:.. :::...:::: ::.::::..: :.::.. ::: :.::::. ::::: ::.:. : 
CCDS44 VGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCN
               70        80        90       100       110       120

     120       130       140       150       160     
pF1KB3 NRLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
       .:.  ::.:   :. ..:. :   . .:: ..:             
CCDS44 QRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ          
              130       140       150                

>>CCDS8678.1 LMO3 gene_id:55885|Hs108|chr12               (145 aa)
 initn: 546 init1: 508 opt: 539  Z-score: 561.7  bits: 110.1 E(32554): 5.7e-25
Smith-Waterman score: 539; 53.2% identity (78.6% similar) in 126 aa overlap (21-146:11-136)

               10        20        30        40        50        60
pF1KB3 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDI
                           : ::::. :: ::.:: :.:.:::  ::::.::. .::..
CCDS86           MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEV
                         10        20        30        40        50

               70        80        90       100       110       120
pF1KB3 GTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRN
       :.. :::...:::: ::.:::: .: :.::.. ::: :.::::. ::::: ::.:. : .
CCDS86 GSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQ
               60        70        80        90       100       110

              130       140       150       160     
pF1KB3 RLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
       :.  ::.:   :. ..:. :   .:.                   
CCDS86 RFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR          
              120       130       140               

>>CCDS58211.1 LMO3 gene_id:55885|Hs108|chr12              (156 aa)
 initn: 546 init1: 508 opt: 539  Z-score: 561.3  bits: 110.1 E(32554): 6.1e-25
Smith-Waterman score: 539; 53.2% identity (78.6% similar) in 126 aa overlap (21-146:22-147)

                10        20        30        40        50         
pF1KB3  MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGD
                            : ::::. :: ::.:: :.:.:::  ::::.::. .::.
CCDS58 MQKKEKSFGIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB3 IGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCR
       .:.. :::...:::: ::.:::: .: :.::.. ::: :.::::. ::::: ::.:. : 
CCDS58 VGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCN
               70        80        90       100       110       120

     120       130       140       150       160     
pF1KB3 NRLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
       .:.  ::.:   :. ..:. :   .:.                   
CCDS58 QRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR          
              130       140       150                

>>CCDS58212.1 LMO3 gene_id:55885|Hs108|chr12              (163 aa)
 initn: 549 init1: 511 opt: 539  Z-score: 561.0  bits: 110.1 E(32554): 6.3e-25
Smith-Waterman score: 539; 53.2% identity (78.6% similar) in 126 aa overlap (21-146:29-154)

                       10        20        30        40        50  
pF1KB3         MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSC
                                   : ::::. :: ::.:: :.:.:::  ::::.:
CCDS58 MLMEGGRAAAARNVSSIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCAC
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB3 CQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKC
       :. .::..:.. :::...:::: ::.:::: .: :.::.. ::: :.::::. ::::: :
CCDS58 CDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDC
               70        80        90       100       110       120

            120       130       140       150       160     
pF1KB3 FTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC
       :.:. : .:.  ::.:   :. ..:. :   .:.                   
CCDS58 FACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR          
              130       140       150       160             

>>CCDS44567.1 LMO2 gene_id:4005|Hs108|chr11               (158 aa)
 initn: 486 init1: 436 opt: 451  Z-score: 472.1  bits: 93.6 E(32554): 5.6e-20
Smith-Waterman score: 451; 43.4% identity (69.2% similar) in 143 aa overlap (9-150:22-158)

                            10        20        30        40       
pF1KB3              MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRC
                            : ::      :   :.::  .:.::..: :.:.:::  :
CCDS44 MSSAIERKSLDPSEEPVDEVLQIPP------SLLTCGGCQQNIGDRYFLKAIDQYWHEDC
               10        20              30        40        50    

        50        60        70        80        90       100       
pF1KB3 LKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNV
       :.:. :  .::..:   : : :  ::: ::.::::..: :..: . : : :..::.. .:
CCDS44 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKV
           60        70        80        90       100       110    

       110       120       130       140        150       160     
pF1KB3 YHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD-RPTALINGHLNSLQSNPLLPDQKVC
       :::.:: :..:....  :::.  ::... ::.:    . ::: .               
CCDS44 YHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI               
          120       130       140       150                       

>>CCDS7888.2 LMO2 gene_id:4005|Hs108|chr11                (227 aa)
 initn: 511 init1: 436 opt: 451  Z-score: 470.0  bits: 93.7 E(32554): 7.4e-20
Smith-Waterman score: 451; 43.4% identity (69.2% similar) in 143 aa overlap (9-150:91-227)

                                     10        20        30        
pF1KB3                       MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYA
                                     : ::      :   :.::  .:.::..: :
CCDS78 PPGTPPPSPMSSAIERKSLDPSEEPVDEVLQIPP------SLLTCGGCQQNIGDRYFLKA
               70        80        90             100       110    

       40        50        60        70        80        90        
pF1KB3 MDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE
       .:.:::  ::.:. :  .::..:   : : :  ::: ::.::::..: :..: . : : :
CCDS78 IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE
          120       130       140       150       160       170    

      100       110       120       130       140        150       
pF1KB3 LVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD-RPTALINGHLNSLQSNP
       ..::.. .::::.:: :..:....  :::.  ::... ::.:    . ::: .       
CCDS78 MTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI       
          180       190       200       210       220              

       160     
pF1KB3 LLPDQKVC

>>CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1                (390 aa)
 initn: 335 init1: 178 opt: 427  Z-score: 442.5  bits: 89.4 E(32554): 2.5e-18
Smith-Waterman score: 427; 43.3% identity (73.2% similar) in 127 aa overlap (22-147:29-150)

                      10        20        30        40        50   
pF1KB3        MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCC
                                   .::::. .: :.:.: ..: .::: ::::. :
CCDS13 MMQSATVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADC
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB3 QAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCF
       : ::.:    :....: . :..:... ::..  :.:: :.:: ...: .::  ::::.::
CCDS13 QMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCF
                  70        80          90       100       110     

           120       130        140       150       160            
pF1KB3 TCSTCRNRLVPGDRFHYI-NGSLFCEHDRPTALINGHLNSLQSNPLLPDQKVC       
       .:  :  .:. ::.:. . .: : :..:  ::  :                         
CCDS13 ACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNA
         120       130       140       150       160       170     

CCDS13 YKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSR
         180       190       200       210       220       230     

>>CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1               (388 aa)
 initn: 426 init1: 185 opt: 426  Z-score: 441.5  bits: 89.2 E(32554): 2.8e-18
Smith-Waterman score: 426; 44.0% identity (68.1% similar) in 141 aa overlap (5-145:46-182)

                                         10        20        30    
pF1KB3                           MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRF
                                     : ..  ::..  . .   ::::::::.::.
CCDS30 ISGGHIQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPEKPAL--CAGCGGKISDRY
          20        30        40        50        60          70   

           40        50        60        70        80        90    
pF1KB3 LLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSI
        : :.:. :: :::::  :.  : .   .:..:.: : :..:: : : .   :. :  .:
CCDS30 YLLAVDKQWHLRCLKCCECKLAL-ESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGI
            80        90        100       110        120       130 

          100       110       120       130       140       150    
pF1KB3 PASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQ
        :::.::::. .::::.::::::: . :. ::.: . .. ..:.    : :         
CCDS30 SASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLS
             140       150       160       170       180       190 

          160                                                      
pF1KB3 SNPLLPDQKVC                                                 
                                                                   
CCDS30 YTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQP
             200       210       220       230       240       250 




165 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:27:22 2016 done: Thu Nov  3 12:27:23 2016
 Total Scan time:  1.800 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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