Result of FASTA (omim) for pF1KB3106
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3106, 837 aa
  1>>>pF1KB3106 837 - 837 aa - 837 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6237+/-0.000433; mu= 15.3237+/- 0.027
 mean_var=121.6895+/-24.531, 0's: 0 Z-trim(113.6): 62  B-trim: 301 in 1/55
 Lambda= 0.116265
 statistics sampled from 22989 (23046) to 22989 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.27), width:  16
 Scan time: 12.940

The best scores are:                                      opt bits E(85289)
NP_036275 (OMIM: 612747) tuftelin-interacting prot ( 837) 5739 974.7       0
XP_016884224 (OMIM: 612747) PREDICTED: tuftelin-in ( 837) 5739 974.7       0
XP_011528381 (OMIM: 612747) PREDICTED: tuftelin-in ( 837) 5739 974.7       0
NP_001008697 (OMIM: 612747) tuftelin-interacting p ( 837) 5739 974.7       0
XP_011542291 (OMIM: 300080,311900) PREDICTED: RNA- ( 618)  183 42.7  0.0062
XP_016885374 (OMIM: 300080,311900) PREDICTED: RNA- ( 726)  183 42.7  0.0071
XP_006724626 (OMIM: 300080,311900) PREDICTED: RNA- ( 727)  183 42.7  0.0071
XP_016885373 (OMIM: 300080,311900) PREDICTED: RNA- ( 727)  183 42.7  0.0071
NP_690595 (OMIM: 300080,311900) RNA-binding protei ( 852)  183 42.8   0.008
NP_001191395 (OMIM: 300080,311900) RNA-binding pro ( 853)  183 42.8   0.008
XP_005272736 (OMIM: 300080,311900) PREDICTED: RNA- ( 917)  183 42.8  0.0084
XP_005272735 (OMIM: 300080,311900) PREDICTED: RNA- ( 918)  183 42.8  0.0085
NP_001191396 (OMIM: 300080,311900) RNA-binding pro ( 929)  183 42.8  0.0085
NP_005667 (OMIM: 300080,311900) RNA-binding protei ( 930)  183 42.8  0.0085
XP_005272734 (OMIM: 300080,311900) PREDICTED: RNA- ( 994)  183 42.8   0.009
NP_001191397 (OMIM: 300080,311900) RNA-binding pro ( 995)  183 42.8   0.009


>>NP_036275 (OMIM: 612747) tuftelin-interacting protein   (837 aa)
 initn: 5739 init1: 5739 opt: 5739  Z-score: 5208.4  bits: 974.7 E(85289):    0
Smith-Waterman score: 5739; 100.0% identity (100.0% similar) in 837 aa overlap (1-837:1-837)

               10        20        30        40        50        60
pF1KB3 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 QQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 QQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 EVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 IWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 IWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 PLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFT
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFP
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
              730       740       750       760       770       780

              790       800       810       820       830       
pF1KB3 AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
              790       800       810       820       830       

>>XP_016884224 (OMIM: 612747) PREDICTED: tuftelin-intera  (837 aa)
 initn: 5739 init1: 5739 opt: 5739  Z-score: 5208.4  bits: 974.7 E(85289):    0
Smith-Waterman score: 5739; 100.0% identity (100.0% similar) in 837 aa overlap (1-837:1-837)

               10        20        30        40        50        60
pF1KB3 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 QQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 EVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 IWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 PLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFT
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFP
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
              730       740       750       760       770       780

              790       800       810       820       830       
pF1KB3 AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
              790       800       810       820       830       

>>XP_011528381 (OMIM: 612747) PREDICTED: tuftelin-intera  (837 aa)
 initn: 5739 init1: 5739 opt: 5739  Z-score: 5208.4  bits: 974.7 E(85289):    0
Smith-Waterman score: 5739; 100.0% identity (100.0% similar) in 837 aa overlap (1-837:1-837)

               10        20        30        40        50        60
pF1KB3 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 QQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 EVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 IWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 PLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFT
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFP
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
              730       740       750       760       770       780

              790       800       810       820       830       
pF1KB3 AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
              790       800       810       820       830       

>>NP_001008697 (OMIM: 612747) tuftelin-interacting prote  (837 aa)
 initn: 5739 init1: 5739 opt: 5739  Z-score: 5208.4  bits: 974.7 E(85289):    0
Smith-Waterman score: 5739; 100.0% identity (100.0% similar) in 837 aa overlap (1-837:1-837)

               10        20        30        40        50        60
pF1KB3 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHNVPDDGLPLQS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 QQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVVNLFHELEKMT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 EVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 IWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IWEVWMPFVRNIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 PLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLTDTVPIHSWIHPWLPLMQARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFT
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGSWEAFMVKNIVPKLGMCLGELVINPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFP
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
              730       740       750       760       770       780

              790       800       810       820       830       
pF1KB3 AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
              790       800       810       820       830       

>>XP_011542291 (OMIM: 300080,311900) PREDICTED: RNA-bind  (618 aa)
 initn: 177 init1: 150 opt: 183  Z-score: 173.6  bits: 42.7 E(85289): 0.0062
Smith-Waterman score: 184; 28.3% identity (56.6% similar) in 198 aa overlap (9-205:425-602)

                                     10        20        30        
pF1KB3                       MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPN
                                     :.: . .    :::. ..:::.    .   
XP_011 QHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREE-KLTDWQKLACLLCR
          400       410       420       430        440       450   

       40        50        60        70        80        90        
pF1KB3 RQRHWQTKEEATYGVWAERDSDDERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDS
       ::  . .::     .  .. :  .. ..  .:    :   : . : :.:.  :. . .: 
XP_011 RQ--FPSKEAL---IRHQQLSGLHKQNLEIHRRAHLSE--NELEA-LEKNDMEQMKYRDR
             460          470       480         490        500     

      100       110       120       130       140       150        
pF1KB3 DDEEKPVKQDDFPKDFGPRKLKTGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQ
         :..  ..  .:.   :.. : :: .. ..  :   :..   .::      .::...::
XP_011 AAERR--EKYGIPEPPEPKRRKYGG-ISTASVDFEQPTRD--GLGS-----DNIGSRMLQ
         510         520        530       540              550     

      160       170       180        190       200       210       
pF1KB3 KMGYVPGRGLGKNAQGIINPIEAKQR-KGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEE
        ::.  : :::.. :::..::::. : .:.: .:: ::   . : ...            
XP_011 AMGWKEGSGLGRKKQGIVTPIEAQTRVRGSG-LGARGSSYGVTSTESYKETLHKTMVTRF
         560       570       580        590       600       610    

       220       230       240       250       260       270       
pF1KB3 FQKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQK
                                                                   
XP_011 NEAQ                                                        
                                                                   

>>XP_016885374 (OMIM: 300080,311900) PREDICTED: RNA-bind  (726 aa)
 initn: 177 init1: 150 opt: 183  Z-score: 172.6  bits: 42.7 E(85289): 0.0071
Smith-Waterman score: 184; 28.3% identity (56.6% similar) in 198 aa overlap (9-205:533-710)

                                     10        20        30        
pF1KB3                       MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPN
                                     :.: . .    :::. ..:::.    .   
XP_016 QHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREE-KLTDWQKLACLLCR
            510       520       530       540        550       560 

       40        50        60        70        80        90        
pF1KB3 RQRHWQTKEEATYGVWAERDSDDERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDS
       ::  . .::     .  .. :  .. ..  .:    :   : . : :.:.  :. . .: 
XP_016 RQ--FPSKEAL---IRHQQLSGLHKQNLEIHRRAHLSE--NELEA-LEKNDMEQMKYRDR
               570          580       590          600       610   

      100       110       120       130       140       150        
pF1KB3 DDEEKPVKQDDFPKDFGPRKLKTGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQ
         :..  ..  .:.   :.. : :: .. ..  :   :..   .::      .::...::
XP_016 AAERR--EKYGIPEPPEPKRRKYGG-ISTASVDFEQPTRD--GLGS-----DNIGSRMLQ
             620       630        640       650              660   

      160       170       180        190       200       210       
pF1KB3 KMGYVPGRGLGKNAQGIINPIEAKQR-KGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEE
        ::.  : :::.. :::..::::. : .:.: .:: ::   . : ...            
XP_016 AMGWKEGSGLGRKKQGIVTPIEAQTRVRGSG-LGARGSSYGVTSTESYKETLHKTMVTRF
           670       680       690        700       710       720  

       220       230       240       250       260       270       
pF1KB3 FQKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQK
                                                                   
XP_016 NEAQ                                                        
                                                                   

>>XP_006724626 (OMIM: 300080,311900) PREDICTED: RNA-bind  (727 aa)
 initn: 177 init1: 150 opt: 183  Z-score: 172.6  bits: 42.7 E(85289): 0.0071
Smith-Waterman score: 184; 28.3% identity (56.6% similar) in 198 aa overlap (9-205:534-711)

                                     10        20        30        
pF1KB3                       MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPN
                                     :.: . .    :::. ..:::.    .   
XP_006 QHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREE-KLTDWQKLACLLCR
           510       520       530       540        550       560  

       40        50        60        70        80        90        
pF1KB3 RQRHWQTKEEATYGVWAERDSDDERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDS
       ::  . .::     .  .. :  .. ..  .:    :   : . : :.:.  :. . .: 
XP_006 RQ--FPSKEAL---IRHQQLSGLHKQNLEIHRRAHLSE--NELEA-LEKNDMEQMKYRDR
              570          580       590         600        610    

      100       110       120       130       140       150        
pF1KB3 DDEEKPVKQDDFPKDFGPRKLKTGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQ
         :..  ..  .:.   :.. : :: .. ..  :   :..   .::      .::...::
XP_006 AAERR--EKYGIPEPPEPKRRKYGG-ISTASVDFEQPTRD--GLGS-----DNIGSRMLQ
            620       630        640       650              660    

      160       170       180        190       200       210       
pF1KB3 KMGYVPGRGLGKNAQGIINPIEAKQR-KGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEE
        ::.  : :::.. :::..::::. : .:.: .:: ::   . : ...            
XP_006 AMGWKEGSGLGRKKQGIVTPIEAQTRVRGSG-LGARGSSYGVTSTESYKETLHKTMVTRF
          670       680       690        700       710       720   

       220       230       240       250       260       270       
pF1KB3 FQKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQK
                                                                   
XP_006 NEAQ                                                        
                                                                   

>>XP_016885373 (OMIM: 300080,311900) PREDICTED: RNA-bind  (727 aa)
 initn: 177 init1: 150 opt: 183  Z-score: 172.6  bits: 42.7 E(85289): 0.0071
Smith-Waterman score: 184; 28.3% identity (56.6% similar) in 198 aa overlap (9-205:534-711)

                                     10        20        30        
pF1KB3                       MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPN
                                     :.: . .    :::. ..:::.    .   
XP_016 QHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREE-KLTDWQKLACLLCR
           510       520       530       540        550       560  

       40        50        60        70        80        90        
pF1KB3 RQRHWQTKEEATYGVWAERDSDDERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDS
       ::  . .::     .  .. :  .. ..  .:    :   : . : :.:.  :. . .: 
XP_016 RQ--FPSKEAL---IRHQQLSGLHKQNLEIHRRAHLSE--NELEA-LEKNDMEQMKYRDR
              570          580       590         600        610    

      100       110       120       130       140       150        
pF1KB3 DDEEKPVKQDDFPKDFGPRKLKTGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQ
         :..  ..  .:.   :.. : :: .. ..  :   :..   .::      .::...::
XP_016 AAERR--EKYGIPEPPEPKRRKYGG-ISTASVDFEQPTRD--GLGS-----DNIGSRMLQ
            620       630        640       650              660    

      160       170       180        190       200       210       
pF1KB3 KMGYVPGRGLGKNAQGIINPIEAKQR-KGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEE
        ::.  : :::.. :::..::::. : .:.: .:: ::   . : ...            
XP_016 AMGWKEGSGLGRKKQGIVTPIEAQTRVRGSG-LGARGSSYGVTSTESYKETLHKTMVTRF
          670       680       690        700       710       720   

       220       230       240       250       260       270       
pF1KB3 FQKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQK
                                                                   
XP_016 NEAQ                                                        
                                                                   

>>NP_690595 (OMIM: 300080,311900) RNA-binding protein 10  (852 aa)
 initn: 150 init1: 150 opt: 183  Z-score: 171.7  bits: 42.8 E(85289): 0.008
Smith-Waterman score: 184; 28.3% identity (56.6% similar) in 198 aa overlap (9-205:659-836)

                                     10        20        30        
pF1KB3                       MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPN
                                     :.: . .    :::. ..:::.    .   
NP_690 QHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREE-KLTDWQKLACLLCR
      630       640       650       660       670        680       

       40        50        60        70        80        90        
pF1KB3 RQRHWQTKEEATYGVWAERDSDDERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDS
       ::  . .::     .  .. :  .. ..  .:    :   : . : :.:.  :. . .: 
NP_690 RQ--FPSKEAL---IRHQQLSGLHKQNLEIHRRAHLSE--NELEA-LEKNDMEQMKYRDR
         690          700       710       720          730         

      100       110       120       130       140       150        
pF1KB3 DDEEKPVKQDDFPKDFGPRKLKTGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQ
         :..  ..  .:.   :.. : :: .. ..  :   :..   .::      .::...::
NP_690 AAERR--EKYGIPEPPEPKRRKYGG-ISTASVDFEQPTRD--GLGS-----DNIGSRMLQ
     740         750       760        770         780              

      160       170       180        190       200       210       
pF1KB3 KMGYVPGRGLGKNAQGIINPIEAKQR-KGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEE
        ::.  : :::.. :::..::::. : .:.: .:: ::   . : ...            
NP_690 AMGWKEGSGLGRKKQGIVTPIEAQTRVRGSG-LGARGSSYGVTSTESYKETLHKTMVTRF
     790       800       810       820        830       840        

       220       230       240       250       260       270       
pF1KB3 FQKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQK
                                                                   
NP_690 NEAQ                                                        
      850                                                          

>>NP_001191395 (OMIM: 300080,311900) RNA-binding protein  (853 aa)
 initn: 150 init1: 150 opt: 183  Z-score: 171.7  bits: 42.8 E(85289): 0.008
Smith-Waterman score: 184; 28.3% identity (56.6% similar) in 198 aa overlap (9-205:660-837)

                                     10        20        30        
pF1KB3                       MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPN
                                     :.: . .    :::. ..:::.    .   
NP_001 QHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREE-KLTDWQKLACLLCR
     630       640       650       660       670        680        

       40        50        60        70        80        90        
pF1KB3 RQRHWQTKEEATYGVWAERDSDDERPSFGGKRARDYSAPVNFISAGLKKGAAEEAELEDS
       ::  . .::     .  .. :  .. ..  .:    :   : . : :.:.  :. . .: 
NP_001 RQ--FPSKEAL---IRHQQLSGLHKQNLEIHRRAHLSE--NELEA-LEKNDMEQMKYRDR
      690            700       710       720          730       740

      100       110       120       130       140       150        
pF1KB3 DDEEKPVKQDDFPKDFGPRKLKTGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQ
         :..  ..  .:.   :.. : :: .. ..  :   :..   .::      .::...::
NP_001 AAERR--EKYGIPEPPEPKRRKYGG-ISTASVDFEQPTRD--GLGS-----DNIGSRMLQ
                750       760        770         780            790

      160       170       180        190       200       210       
pF1KB3 KMGYVPGRGLGKNAQGIINPIEAKQR-KGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEE
        ::.  : :::.. :::..::::. : .:.: .:: ::   . : ...            
NP_001 AMGWKEGSGLGRKKQGIVTPIEAQTRVRGSG-LGARGSSYGVTSTESYKETLHKTMVTRF
              800       810       820        830       840         

       220       230       240       250       260       270       
pF1KB3 FQKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQK
                                                                   
NP_001 NEAQ                                                        
     850                                                           




837 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:26:48 2016 done: Thu Nov  3 12:26:50 2016
 Total Scan time: 12.940 Total Display time:  0.140

Function used was FASTA [36.3.4 Apr, 2011]
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