Result of FASTA (omim) for
pF1KA1788
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1788, 411 aa
1>>>pF1KA1788 411 - 411 aa - 411 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.1829+/-0.000433; mu= -6.2929+/- 0.027
mean_var=442.0762+/-88.639, 0's: 0 Z-trim(123.7): 145 B-trim: 191 in 1/58
Lambda= 0.060999
statistics sampled from 43756 (43939) to 43756 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.515), width: 16
Scan time: 10.010
The best scores are: opt bits E(85289)
NP_068745 (OMIM: 605420,609597,613451,615529) home ( 411) 2817 261.7 2.4e-69
XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX ( 231) 782 82.3 1.3e-15
NP_008913 (OMIM: 601527,613456) ALX homeobox prote ( 326) 782 82.5 1.7e-15
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343) 721 77.2 7.2e-14
NP_001263380 (OMIM: 606701) dorsal root ganglia ho ( 263) 422 50.7 5e-06
NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562) 418 50.7 1.1e-05
NP_878314 (OMIM: 142993,610092,610093) visual syst ( 361) 396 48.6 3e-05
NP_116142 (OMIM: 605726,610362,610381,613757) reti ( 184) 380 46.9 5.1e-05
NP_001306003 (OMIM: 605726,610362,610381,613757) r ( 230) 380 47.0 5.9e-05
XP_016883326 (OMIM: 122000,148300,605020,614195) P ( 280) 366 45.8 0.00016
NP_001243201 (OMIM: 122000,148300,605020,614195) v ( 301) 366 45.9 0.00017
NP_005020 (OMIM: 107250,602669,610623) pituitary h ( 302) 364 45.7 0.00019
NP_055403 (OMIM: 122000,148300,605020,614195) visu ( 365) 366 45.9 0.00019
NP_001191327 (OMIM: 137600,180500,180550,601542,60 ( 317) 359 45.3 0.00026
NP_001191326 (OMIM: 137600,180500,180550,601542,60 ( 317) 359 45.3 0.00026
NP_700475 (OMIM: 137600,180500,180550,601542,60422 ( 317) 359 45.3 0.00026
NP_003915 (OMIM: 209880,603851,613013) paired meso ( 314) 357 45.1 0.0003
NP_001290437 (OMIM: 612019) intestine-specific hom ( 245) 350 44.4 0.00038
NP_008833 (OMIM: 167420,202650) paired mesoderm ho ( 217) 345 43.9 0.00048
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 349 44.4 0.00052
NP_000316 (OMIM: 137600,180500,180550,601542,60422 ( 324) 347 44.2 0.00056
XP_006711451 (OMIM: 167420,202650) PREDICTED: pair ( 198) 341 43.5 0.00057
NP_005160 (OMIM: 602078,602753) paired mesoderm ho ( 284) 344 43.9 0.00061
NP_073207 (OMIM: 167420,202650) paired mesoderm ho ( 245) 342 43.6 0.00062
NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403) 347 44.3 0.00065
NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407) 347 44.3 0.00065
XP_011530329 (OMIM: 137600,180500,180550,601542,60 ( 271) 342 43.7 0.00067
NP_700476 (OMIM: 137600,180500,180550,601542,60422 ( 271) 342 43.7 0.00067
NP_001191328 (OMIM: 137600,180500,180550,601542,60 ( 271) 342 43.7 0.00067
NP_002644 (OMIM: 119800,186550,602149) pituitary h ( 314) 343 43.8 0.0007
NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479) 347 44.4 0.00073
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483) 347 44.4 0.00073
NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484) 347 44.4 0.00073
NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505) 347 44.4 0.00075
NP_039236 (OMIM: 167410,268220) paired box protein ( 518) 343 44.1 0.00098
NP_057391 (OMIM: 604675) paired mesoderm homeobox ( 253) 334 43.0 0.001
NP_001128726 (OMIM: 167410,268220) paired box prot ( 505) 339 43.7 0.0012
NP_002575 (OMIM: 167410,268220) paired box protein ( 520) 339 43.7 0.0013
NP_115485 (OMIM: 604529) homeobox protein orthoped ( 325) 332 42.9 0.0014
XP_016870292 (OMIM: 604675) PREDICTED: paired meso ( 193) 325 42.0 0.0015
NP_703149 (OMIM: 300154) homeobox protein ESX1 [Ho ( 406) 329 42.7 0.0019
NP_006875 (OMIM: 602504) short stature homeobox pr ( 331) 326 42.4 0.002
NP_003021 (OMIM: 602504) short stature homeobox pr ( 355) 326 42.4 0.0021
NP_001297088 (OMIM: 106210,120430,136520,148190,16 ( 401) 327 42.6 0.0022
NP_001245394 (OMIM: 106210,120430,136520,148190,16 ( 422) 325 42.4 0.0025
NP_000271 (OMIM: 106210,120430,136520,148190,16555 ( 422) 325 42.4 0.0025
NP_001245393 (OMIM: 106210,120430,136520,148190,16 ( 422) 325 42.4 0.0025
NP_001121084 (OMIM: 106210,120430,136520,148190,16 ( 422) 325 42.4 0.0025
NP_001245391 (OMIM: 106210,120430,136520,148190,16 ( 436) 325 42.4 0.0026
NP_001595 (OMIM: 106210,120430,136520,148190,16555 ( 436) 325 42.4 0.0026
>>NP_068745 (OMIM: 605420,609597,613451,615529) homeobox (411 aa)
initn: 2817 init1: 2817 opt: 2817 Z-score: 1365.9 bits: 261.7 E(85289): 2.4e-69
Smith-Waterman score: 2817; 100.0% identity (100.0% similar) in 411 aa overlap (1-411:1-411)
10 20 30 40 50 60
pF1KA1 MNAETCVSYCESPAAAMDAYYSPVSQSREGSSPFRAFPGGDKFGTTFLSAAAKAQGFGDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MNAETCVSYCESPAAAMDAYYSPVSQSREGSSPFRAFPGGDKFGTTFLSAAAKAQGFGDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 KSRARYGAGQQDLATPLESGAGARGSFNKFQPQPSTPQPQPPPQPQPQQQQPQPQPPAQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 KSRARYGAGQQDLATPLESGAGARGSFNKFQPQPSTPQPQPPPQPQPQQQQPQPQPPAQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 HLYLQRGACKTPPDGSLKLQEGSSGHSAALQVPCYAKESSLGEPELPPDSDTVGMDSSYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 HLYLQRGACKTPPDGSLKLQEGSSGHSAALQVPCYAKESSLGEPELPPDSDTVGMDSSYL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 SVKEAGVKGPQDRASSDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 SVKEAGVKGPQDRASSDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 VYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 VYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 AQIQNPSWLGNNGAASPVPACVVPCDPVPACMSPHAHPPGSGASSVTDFLSVSGAGSHVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 AQIQNPSWLGNNGAASPVPACVVPCDPVPACMSPHAHPPGSGASSVTDFLSVSGAGSHVG
310 320 330 340 350 360
370 380 390 400 410
pF1KA1 QTHMGSLFGAASLSPGLNGYELNGEPDRKTSSIAALRMKAKEHSAAISWAT
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 QTHMGSLFGAASLSPGLNGYELNGEPDRKTSSIAALRMKAKEHSAAISWAT
370 380 390 400 410
>>XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX home (231 aa)
initn: 697 init1: 579 opt: 782 Z-score: 401.1 bits: 82.3 E(85289): 1.3e-15
Smith-Waterman score: 782; 52.5% identity (78.6% similar) in 238 aa overlap (175-410:1-230)
150 160 170 180 190 200
pF1KA1 GHSAALQVPCYAKESSLGEPELPPDSDTVGMDSSYLSVKEAGVKGPQDRASSDLPSPLEK
::. :.. . ::: :.. ..: .:
XP_011 MDNCN-SLRMSPVKGMQEK--GELDELGDK
10 20
210 220 230 240 250 260
pF1KA1 ADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQN
::. ...::::.:::::: ::::::::::::::::::.:::::.::.::::::::::::
XP_011 CDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQN
30 40 50 60 70 80
270 280 290 300 310 320
pF1KA1 RRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASPVPACVVP
::::::::::.::.::...::...:.. .: :...: :::: : :: ...: : .:..:
XP_011 RRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSYPQIQNNLWAGNASGGSVVTSCMLP
90 100 110 120 130 140
330 340 350 360 370 380
pF1KA1 CDPVPACMSPHAHPPGSGASSVTDFLSVSGAGSHVGQTHMGSLFGAASLSPGLNGYELNG
: . .::.:..: : . :: : : . .. ::: ....: . :. . ::. ..
XP_011 RD-TSSCMTPYSHSPRTD-SSYTGFSNHQNQFSHVP---LNNFFTDSLLTGATNGHAFET
150 160 170 180 190 200
390 400 410
pF1KA1 EPD--RKTSSIAALRMKAKEHSAAISWAT
.:. :..::::.::::::::.: ::::
XP_011 KPEFERRSSSIAVLRMKAKEHTANISWAM
210 220 230
>>NP_008913 (OMIM: 601527,613456) ALX homeobox protein 1 (326 aa)
initn: 697 init1: 579 opt: 782 Z-score: 399.3 bits: 82.5 E(85289): 1.7e-15
Smith-Waterman score: 782; 52.5% identity (78.6% similar) in 238 aa overlap (175-410:96-325)
150 160 170 180 190 200
pF1KA1 GHSAALQVPCYAKESSLGEPELPPDSDTVGMDSSYLSVKEAGVKGPQDRASSDLPSPLEK
::. :.. . ::: :.. ..: .:
NP_008 ERTSPCQDSSVNYGITKVEGQPLHTELNRAMDNCN-SLRMSPVKGMQEK--GELDELGDK
70 80 90 100 110 120
210 220 230 240 250 260
pF1KA1 ADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQN
::. ...::::.:::::: ::::::::::::::::::.:::::.::.::::::::::::
NP_008 CDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQN
130 140 150 160 170 180
270 280 290 300 310 320
pF1KA1 RRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASPVPACVVP
::::::::::.::.::...::...:.. .: :...: :::: : :: ...: : .:..:
NP_008 RRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSYPQIQNNLWAGNASGGSVVTSCMLP
190 200 210 220 230 240
330 340 350 360 370 380
pF1KA1 CDPVPACMSPHAHPPGSGASSVTDFLSVSGAGSHVGQTHMGSLFGAASLSPGLNGYELNG
: . .::.:..: : . :: : : . .. ::: ....: . :. . ::. ..
NP_008 RD-TSSCMTPYSHSPRTD-SSYTGFSNHQNQFSHVP---LNNFFTDSLLTGATNGHAFET
250 260 270 280 290
390 400 410
pF1KA1 EPD--RKTSSIAALRMKAKEHSAAISWAT
.:. :..::::.::::::::.: ::::
NP_008 KPEFERRSSSIAVLRMKAKEHTANISWAM
300 310 320
>>NP_006483 (OMIM: 136760,606014) homeobox protein arist (343 aa)
initn: 681 init1: 583 opt: 721 Z-score: 370.0 bits: 77.2 E(85289): 7.2e-14
Smith-Waterman score: 731; 41.1% identity (63.1% similar) in 360 aa overlap (76-411:8-343)
50 60 70 80 90 100
pF1KA1 TFLSAAAKAQGFGDAKSRARYGAGQQDLATPLESGAGARGSFNKFQPQPSTPQPQPPPQP
:.. : : : . .: : :: :
NP_006 MDPEHCAPFRVGP-APGPYVASGDEP--PGPQGTPAA
10 20 30
110 120 130 140 150
pF1KA1 QPQQQQPQPQPPAQPHLYLQRGAC----------KTPPDGSLK-LQEG---SSGHSAALQ
:. . : :: :.: . :: :: :. : : ..:: .
NP_006 APHLH---PAPPRGPRL-TRFPACGPLEPYLPEPAKPPAKYLQDLGPGPALNGGH--FYE
40 50 60 70 80
160 170 180 190 200
pF1KA1 VPCYAKESS---LGEPELPPDSDTVGMDS-SYLSVKEAGVKGPQDRASSDLP-SPL--EK
: :.:.. . :.:: : :. : :. : :: :: :: :: ..
NP_006 GPAEAEEKTSKAASFPQLPLDCRGGPRDGPSNLQ----GSPGPC-LASLHLPLSPGLPDS
90 100 110 120 130 140
210 220 230 240 250 260
pF1KA1 ADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQN
. .::.:::::::::...::::::::::::::::::::::::.:::::::::::::::
NP_006 MELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQN
150 160 170 180 190 200
270 280 290 300 310 320
pF1KA1 RRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASPVPACVVP
::::::::::.:..:. :. :..::.. .: :.... :.:: : .. :..:: :.:
NP_006 RRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLW-ASPGSGSPGGPCLVS
210 220 230 240 250 260
330 340 350 360 370 380
pF1KA1 CDPVPA-CMSPHAHPPGSGASSVTDFLSVSGAGSHVGQTHMGSLFGAASLSPGLNG--YE
. .:. ::::..:: :: :. :..: . .. .: : ... .. : :.: .:
NP_006 PEGIPSPCMSPYSHPHGS----VAGFMGVPAPSA----AHPG-IYSIHGFPPTLGGHSFE
270 280 290 300 310
390 400 410
pF1KA1 LNGEPDRKTSSIAALRMKAKEHSAAISWAT
... : :. :...::.: :: . ..:.:
NP_006 PSSDGDYKSPSLVSLRVKPKEPPGLLNWTT
320 330 340
>>NP_001263380 (OMIM: 606701) dorsal root ganglia homeob (263 aa)
initn: 430 init1: 330 opt: 422 Z-score: 229.2 bits: 50.7 E(85289): 5e-06
Smith-Waterman score: 422; 42.2% identity (62.3% similar) in 199 aa overlap (213-407:32-220)
190 200 210 220 230 240
pF1KA1 KEAGVKGPQDRASSDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVY
:.:::::::: ::: :: :: .::::::.
NP_001 FYFHCPPQLEGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVF
10 20 30 40 50 60
250 260 270 280 290 300
pF1KA1 AREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQ
.::.:::. .::::::::::::::::::: :: .. :. .. : : .: :
NP_001 TREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSPP
70 80 90 100 110 120
310 320 330 340 350
pF1KA1 IQNPSWLGNNG--AASPVPACVVPCDPV-PACMSPHAHPPGSGASSVTDFLSVSGAGSHV
. . ... : . . : : : :.:. ::. ...: . : :::
NP_001 PGDQARSKKEALEAQQSLGRTVGPAGPFFPSCL------PGTLLNTAT----YAQALSHV
130 140 150 160 170
360 370 380 390 400 410
pF1KA1 GQTHMGSLFGAASLSP-GLNGYELNGEPDRKTSSIAALRMKAKEHSAAISWAT
.. . : : . .: ::. : . .:.:.:.:::::.::: :.
NP_001 ASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTS
180 190 200 210 220 230
NP_001 SSPGPVAKPAPPDGSQEKTSPTKEQSEAEKSV
240 250 260
>>NP_620689 (OMIM: 300004,300215,300382,300419,308350,30 (562 aa)
initn: 537 init1: 366 opt: 418 Z-score: 223.3 bits: 50.7 E(85289): 1.1e-05
Smith-Waterman score: 485; 41.6% identity (61.4% similar) in 267 aa overlap (173-408:282-547)
150 160 170 180 190 200
pF1KA1 SSGHSAALQVPCYAKESSLGEPELPPDSDTVGMDSSYLSVKEAGVKGPQDRASSD-LPSP
:. ... :: :: . :.: ..: :
NP_620 LEDDARALLKEPRRCPVAATGAVAAAAAAAVATEGGELSPKEELLLHPEDAEGKDGEDSV
260 270 280 290 300 310
210 220 230 240 250
pF1KA1 LEKADSESNKG----KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEAR
.: :.:..: :.:: :::::::::::::..:::::::::..::.:::: ::::::
NP_620 CLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEAR
320 330 340 350 360 370
260 270 280 290 300 310
pF1KA1 VQVWFQNRRAKWRKRERFG-QMQQVRTHF----STAYELPLLTRAENYAQIQNPSWLGNN
::::::::::::::::. : : . : :... : : . ..:. .
NP_620 VQVWFQNRRAKWRKREKAGAQTHPPGLPFPGPLSATHPLSPYLDASPFPP-HHPALDSAW
380 390 400 410 420 430
320 330 340 350 360
pF1KA1 GAASPVPACVVPCDPVP---ACMSPHAHPPGS----GASSVTDFLSVSGAGSHVGQTH--
::. . : . : : : : . : . : : ::. .: : ... .:
NP_620 TAAAAAAAAAFPSLPPPPGSASLPPSGAPLGLSTFLGAAVFRHPAFISPAFGRLFSTMAP
440 450 460 470 480 490
370 380 390 400 410
pF1KA1 MGSLFGAASL----SPGLNGYELNG---EP-----DRKTSSIAALRMKAKEHSAAISWAT
. : ::.: .:...: .: .: ::..:::::::.:::::.: ..
NP_620 LTSASTAAALLRQPTPAVEGAVASGALADPATAAADRRASSIAALRLKAKEHAAQLTQLN
500 510 520 530 540 550
NP_620 ILPGTSTGKEVC
560
>>NP_878314 (OMIM: 142993,610092,610093) visual system h (361 aa)
initn: 452 init1: 355 opt: 396 Z-score: 215.2 bits: 48.6 E(85289): 3e-05
Smith-Waterman score: 402; 38.2% identity (61.4% similar) in 220 aa overlap (58-274:6-208)
30 40 50 60 70 80
pF1KA1 REGSSPFRAFPGGDKFGTTFLSAAAKAQGFGDAKSRARYGAGQQDLATPLESGAGARGSF
:.: :. . .. .: .:: :: .
NP_878 MTGKAGEALSKPK----SETVAKSTSGGAPARCT-
10 20 30
90 100 110 120 130 140
pF1KA1 NKFQPQPSTPQPQPPPQPQPQQQQPQPQPPAQPHLYLQRGACKTPPDGSLKLQEGSSGHS
: : . ::. .:. : :: :.. . :.. : : .:
NP_878 -GFGIQEILGLNKEPPSSHPRAALDGLAPG---HLLAARSVLSPAGVGGMGLL-GPGGLP
40 50 60 70 80
150 160 170 180 190 200
pF1KA1 AALQVPCYAKESSLGEPE---LPPDSDTVGMDSSYLSVKEAGVKGPQDRASSDLPSPLEK
. : . . :..:. : : .: :. :...... . .: .::: ..
NP_878 GFYTQPTFLE--VLSDPQSVHLQP----LGRASGPLDTSQTASSDSEDVSSSDRKMS-KS
90 100 110 120 130
210 220 230 240 250 260
pF1KA1 ADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQN
: ....: ::::.:: :::::::::::.:...:::::::::.:::.:.: : :.::::::
NP_878 ALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQN
140 150 160 170 180 190
270 280 290 300 310 320
pF1KA1 RRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASPVPACVVP
:::::::::.
NP_878 RRAKWRKREKCWGRSSVMAEYGLYGAMVRHSIPLPESILKSAKDGIMDSCAPWLLGMHKK
200 210 220 230 240 250
>>NP_116142 (OMIM: 605726,610362,610381,613757) retina a (184 aa)
initn: 361 init1: 327 opt: 380 Z-score: 211.2 bits: 46.9 E(85289): 5.1e-05
Smith-Waterman score: 380; 46.7% identity (70.4% similar) in 135 aa overlap (208-339:21-153)
180 190 200 210 220 230
pF1KA1 SYLSVKEAGVKGPQDRASSDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTH
:. : :.::::::::.:::..::..:. .:
NP_116 MFLSPGEGPATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASH
10 20 30 40 50
240 250 260 270 280 290
pF1KA1 YPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERF--GQMQQVRTHFSTAYELPLLT
:::::.::.:: .. : :.::::::::::::::..::. :. . .. : ::. .
NP_116 YPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPF-A
60 70 80 90 100
300 310 320 330 340 350
pF1KA1 RAENYAQIQNPSWLGNNGAASP-VPACVVPCDPVPACMSPHAHPPGSGASSVTDFLSVSG
: .. .: ::: . : : .: . : . : ..::: :
NP_116 RPPAMSLPLEP-WLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRL
110 120 130 140 150 160
360 370 380 390 400 410
pF1KA1 AGSHVGQTHMGSLFGAASLSPGLNGYELNGEPDRKTSSIAALRMKAKEHSAAISWAT
NP_116 LAKEHAQALDRAWPPA
170 180
>>NP_001306003 (OMIM: 605726,610362,610381,613757) retin (230 aa)
initn: 383 init1: 327 opt: 380 Z-score: 210.0 bits: 47.0 E(85289): 5.9e-05
Smith-Waterman score: 397; 39.8% identity (63.3% similar) in 196 aa overlap (147-339:20-199)
120 130 140 150 160 170
pF1KA1 PAQPHLYLQRGACKTPPDGSLKLQEGSSGHSAALQVPCYAKESSLGEPELPPDSDTVGMD
: ::..: . ... : .: : ::
NP_001 MPAPVEGTDFPGAGRQAWGSPALSLP--VAPPAVSPPSVPLPSHQVG--
10 20 30 40
180 190 200 210 220 230
pF1KA1 SSYLSVKEAGVKGPQDRASSDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKT
. .:: : :: .... :. :. : :.::::::::.:::..::..:. .
NP_001 AMFLSPGE----GPATEGGGLGPG------EEAPKKKHRRNRTTFTTYQLHQLERAFEAS
50 60 70 80 90
240 250 260 270 280 290
pF1KA1 HYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERF--GQMQQVRTHFSTAYELPLL
::::::.::.:: .. : :.::::::::::::::..::. :. . .. : ::.
NP_001 HYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPF-
100 110 120 130 140 150
300 310 320 330 340 350
pF1KA1 TRAENYAQIQNPSWLGNNGAASP-VPACVVPCDPVPACMSPHAHPPGSGASSVTDFLSVS
.: .. .: ::: . : : .: . : . : ..::: :
NP_001 ARPPAMSLPLEP-WLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLR
160 170 180 190 200 210
360 370 380 390 400 410
pF1KA1 GAGSHVGQTHMGSLFGAASLSPGLNGYELNGEPDRKTSSIAALRMKAKEHSAAISWAT
NP_001 LLAKEHAQALDRAWPPA
220 230
>>XP_016883326 (OMIM: 122000,148300,605020,614195) PREDI (280 aa)
initn: 402 init1: 339 opt: 366 Z-score: 202.3 bits: 45.8 E(85289): 0.00016
Smith-Waterman score: 366; 42.8% identity (58.2% similar) in 194 aa overlap (97-276:44-227)
70 80 90 100 110 120
pF1KA1 GAGQQDLATPLESGAGARGSFNKFQPQPSTPQPQPPPQPQPQQQQPQPQPPAQPHL---Y
: : : : . . : : : :
XP_016 SRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEG-PAVAPCPGPGLDGSS
20 30 40 50 60 70
130 140 150 160 170 180
pF1KA1 LQRGACKTPPDGSLKLQEG-SSGHSAALQVPCYAKESSLGEPELPPDSDTVGMDSSYLSV
: ::: : : : : : .. :: ..:: . : ::: . . .
XP_016 LARGAL---PLG-LGLLCGFGTQPPAAARAPCLLLADV---PFLPPRGPEPA--APLAPS
80 90 100 110 120
190 200 210 220 230
pF1KA1 KEAGVKGPQDRA----SSDLPSPLE-----KADSESNKGKKRRNRTTFTSYQLEELEKVF
. . : : :. .:: : : ::. .: ::::.::.::..:::::::.:
XP_016 RPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAF
130 140 150 160 170 180
240 250 260 270 280 290
pF1KA1 QKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE-RFGQMQQVRTHFSTAYELP
...:::::::::.::..:.: : :.::::::::::::::: :.:
XP_016 SEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVR
190 200 210 220 230 240
300 310 320 330 340 350
pF1KA1 LLTRAENYAQIQNPSWLGNNGAASPVPACVVPCDPVPACMSPHAHPPGSGASSVTDFLSV
XP_016 HCIPLPDSVLNSAEGGLLGSCAPWLLEGETLGCREMK
250 260 270 280
411 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 11:21:55 2016 done: Thu Nov 3 11:21:57 2016
Total Scan time: 10.010 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]