Result of FASTA (omim) for pF1KA0791
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0791, 1332 aa
  1>>>pF1KA0791 1332 - 1332 aa - 1332 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3401+/-0.000469; mu= 8.9444+/- 0.029
 mean_var=158.1275+/-33.047, 0's: 0 Z-trim(114.6): 4  B-trim: 1186 in 1/50
 Lambda= 0.101993
 statistics sampled from 24482 (24486) to 24482 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.287), width:  16
 Scan time: 17.760

The best scores are:                                      opt bits E(85289)
NP_004289 (OMIM: 606694,615770) nuclear pore compl (1332) 8831 1312.7       0
NP_705618 (OMIM: 606694,615770) nuclear pore compl (1391) 8831 1312.7       0
XP_011512467 (OMIM: 606694,615770) PREDICTED: nucl ( 892) 5469 817.9       0
NP_001265241 (OMIM: 606694,615770) nuclear pore co (1327) 5061 757.9  1e-217


>>NP_004289 (OMIM: 606694,615770) nuclear pore complex p  (1332 aa)
 initn: 8831 init1: 8831 opt: 8831  Z-score: 7027.6  bits: 1312.7 E(85289):    0
Smith-Waterman score: 8831; 100.0% identity (100.0% similar) in 1332 aa overlap (1-1332:1-1332)

               10        20        30        40        50        60
pF1KA0 MSDMDYPLQGPGLLSVPNLPEISSIRRVPLPPELVEQFGHMQCNCMMGVFPPISRAWLTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSDMDYPLQGPGLLSVPNLPEISSIRRVPLPPELVEQFGHMQCNCMMGVFPPISRAWLTI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 DSDIFMWNYEDGGDLAYFDGLSETILAVGLVKPKAGIFQPHVRHLLVLATPVDIVILGLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DSDIFMWNYEDGGDLAYFDGLSETILAVGLVKPKAGIFQPHVRHLLVLATPVDIVILGLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 YANLQTGSGVLNDSLSGGMQLLPDPLYSLPTDNTYLLTITSTDNGRIFLAGKDGCLYEVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 YANLQTGSGVLNDSLSGGMQLLPDPLYSLPTDNTYLLTITSTDNGRIFLAGKDGCLYEVA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 YQAEAGWFSQRCRKINHSKSSLSFLVPSLLQFTFSEDDPILQIAIDNSRNILYTRSEKGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 YQAEAGWFSQRCRKINHSKSSLSFLVPSLLQFTFSEDDPILQIAIDNSRNILYTRSEKGV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 IQVYDLGQDGQGMSRVASVSQNAIVSAAGNIARTIDRSVFKPIVQIAVIENSESLDCQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IQVYDLGQDGQGMSRVASVSQNAIVSAAGNIARTIDRSVFKPIVQIAVIENSESLDCQLL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 AVTHAGVRLYFSTCPFRQPLARPNTLTLVHVRLPPGFSASSTVEKPSKVHRALYSKGILL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AVTHAGVRLYFSTCPFRQPLARPNTLTLVHVRLPPGFSASSTVEKPSKVHRALYSKGILL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 MAASENEDNDILWCVNHDTFPFQKPMMETQMTAGVDGHSWALSAIDELKVDKIITPLNKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAASENEDNDILWCVNHDTFPFQKPMMETQMTAGVDGHSWALSAIDELKVDKIITPLNKD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 HIPITDSPVVVQQHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLLVSNVGGDGEEIERFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 HIPITDSPVVVQQHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLLVSNVGGDGEEIERFF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 KLHQEDQACATCLILACSTAACDREVSAWATRAFFRYGGEAQMRFPTTLPPPSNVGPILG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KLHQEDQACATCLILACSTAACDREVSAWATRAFFRYGGEAQMRFPTTLPPPSNVGPILG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 SPVYSSSPVPSGSPYPNPSFLGTPSHGIQPPAMSTPVCALGNPATQATNMSCVTGPEIVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SPVYSSSPVPSGSPYPNPSFLGTPSHGIQPPAMSTPVCALGNPATQATNMSCVTGPEIVY
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 SGKHNGICIYFSRIMGNIWDASLVVERIFKSGNREITAIESSVPCQLLESVLQELKGLQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SGKHNGICIYFSRIMGNIWDASLVVERIFKSGNREITAIESSVPCQLLESVLQELKGLQE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 FLDRNSQFAGGPLGNPNTTAKVQQRLIGFMRPENGNPQQMQQELQRKFHEAQLSEKISLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FLDRNSQFAGGPLGNPNTTAKVQQRLIGFMRPENGNPQQMQQELQRKFHEAQLSEKISLQ
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 AIQQLVRKSYQALALWKLLCEHQFTIIVAELQKELQEQLKITTFKDLVIRDKELTGALIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AIQQLVRKSYQALALWKLLCEHQFTIIVAELQKELQEQLKITTFKDLVIRDKELTGALIA
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 SLINCYIRDNAAVDGISLHLQDICPLLYSTDDAICSKANELLQRSRQVQNKTEKERMLRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SLINCYIRDNAAVDGISLHLQDICPLLYSTDDAICSKANELLQRSRQVQNKTEKERMLRE
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 SLKEYQKISNQVDLSNVCAQYRQVRFYEGVVELSLTAAEKKDPQGLGLHFYKHGEPEEDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SLKEYQKISNQVDLSNVCAQYRQVRFYEGVVELSLTAAEKKDPQGLGLHFYKHGEPEEDI
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 VGLQAFQERLNSYKCITDTLQELVNQSKAAPQSPSVPKKPGPPVLSSDPNMLSNEEAGHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VGLQAFQERLNSYKCITDTLQELVNQSKAAPQSPSVPKKPGPPVLSSDPNMLSNEEAGHH
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 FEQMLKLSQRSKDELFSIALYNWLIQVDLADKLLQVASPFLEPHLVRMAKVDQNRVRYMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FEQMLKLSQRSKDELFSIALYNWLIQVDLADKLLQVASPFLEPHLVRMAKVDQNRVRYMD
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA0 LLWRYYEKNRSFSNAARVLSRLADMHSTEISLQQRLEYIARAILSAKSSTAISSIAADGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LLWRYYEKNRSFSNAARVLSRLADMHSTEISLQQRLEYIARAILSAKSSTAISSIAADGE
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA0 FLHELEEKMEVARIQLQIQETLQRQYSHHSSVQDAVSQLDSELMDITKLYGEFADPFKLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FLHELEEKMEVARIQLQIQETLQRQYSHHSSVQDAVSQLDSELMDITKLYGEFADPFKLA
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA0 ECKLAIIHCAGYSDPILVQTLWQDIIEKELSDSVTLSSSDRMHALSLKIVLLGKIYAGTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ECKLAIIHCAGYSDPILVQTLWQDIIEKELSDSVTLSSSDRMHALSLKIVLLGKIYAGTP
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA0 RFFPLDFIVQFLEQQVCTLNWDVGFVIQTMNEIGVPLPRLLEVYDQLFKSRDPFWNRMKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RFFPLDFIVQFLEQQVCTLNWDVGFVIQTMNEIGVPLPRLLEVYDQLFKSRDPFWNRMKK
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA0 PLHLLDCIHVLLIRYVENPSQVLNCERRRFTNLCLDAVCGYLVELQSMSSSVAVQAITGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PLHLLDCIHVLLIRYVENPSQVLNCERRRFTNLCLDAVCGYLVELQSMSSSVAVQAITGN
             1270      1280      1290      1300      1310      1320

             1330  
pF1KA0 FKSLQAKLERLH
       ::::::::::::
NP_004 FKSLQAKLERLH
             1330  

>>NP_705618 (OMIM: 606694,615770) nuclear pore complex p  (1391 aa)
 initn: 8831 init1: 8831 opt: 8831  Z-score: 7027.3  bits: 1312.7 E(85289):    0
Smith-Waterman score: 8831; 100.0% identity (100.0% similar) in 1332 aa overlap (1-1332:60-1391)

                                             10        20        30
pF1KA0                               MSDMDYPLQGPGLLSVPNLPEISSIRRVPL
                                     ::::::::::::::::::::::::::::::
NP_705 IDRQLQEDRMYPDLSELLMVSAPNNPTVSGMSDMDYPLQGPGLLSVPNLPEISSIRRVPL
      30        40        50        60        70        80         

               40        50        60        70        80        90
pF1KA0 PPELVEQFGHMQCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 PPELVEQFGHMQCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGL
      90       100       110       120       130       140         

              100       110       120       130       140       150
pF1KA0 VKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQTGSGVLNDSLSGGMQLLPDPLYSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 VKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQTGSGVLNDSLSGGMQLLPDPLYSLP
     150       160       170       180       190       200         

              160       170       180       190       200       210
pF1KA0 TDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLSFLVPSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 TDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLSFLVPSLL
     210       220       230       240       250       260         

              220       230       240       250       260       270
pF1KA0 QFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQGMSRVASVSQNAIVSAAGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 QFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQGMSRVASVSQNAIVSAAGN
     270       280       290       300       310       320         

              280       290       300       310       320       330
pF1KA0 IARTIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTCPFRQPLARPNTLTLVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 IARTIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTCPFRQPLARPNTLTLVH
     330       340       350       360       370       380         

              340       350       360       370       380       390
pF1KA0 VRLPPGFSASSTVEKPSKVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 VRLPPGFSASSTVEKPSKVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQ
     390       400       410       420       430       440         

              400       410       420       430       440       450
pF1KA0 MTAGVDGHSWALSAIDELKVDKIITPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 MTAGVDGHSWALSAIDELKVDKIITPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSL
     450       460       470       480       490       500         

              460       470       480       490       500       510
pF1KA0 MFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQEDQACATCLILACSTAACDREVSAWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 MFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQEDQACATCLILACSTAACDREVSAWA
     510       520       530       540       550       560         

              520       530       540       550       560       570
pF1KA0 TRAFFRYGGEAQMRFPTTLPPPSNVGPILGSPVYSSSPVPSGSPYPNPSFLGTPSHGIQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 TRAFFRYGGEAQMRFPTTLPPPSNVGPILGSPVYSSSPVPSGSPYPNPSFLGTPSHGIQP
     570       580       590       600       610       620         

              580       590       600       610       620       630
pF1KA0 PAMSTPVCALGNPATQATNMSCVTGPEIVYSGKHNGICIYFSRIMGNIWDASLVVERIFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 PAMSTPVCALGNPATQATNMSCVTGPEIVYSGKHNGICIYFSRIMGNIWDASLVVERIFK
     630       640       650       660       670       680         

              640       650       660       670       680       690
pF1KA0 SGNREITAIESSVPCQLLESVLQELKGLQEFLDRNSQFAGGPLGNPNTTAKVQQRLIGFM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 SGNREITAIESSVPCQLLESVLQELKGLQEFLDRNSQFAGGPLGNPNTTAKVQQRLIGFM
     690       700       710       720       730       740         

              700       710       720       730       740       750
pF1KA0 RPENGNPQQMQQELQRKFHEAQLSEKISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 RPENGNPQQMQQELQRKFHEAQLSEKISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAE
     750       760       770       780       790       800         

              760       770       780       790       800       810
pF1KA0 LQKELQEQLKITTFKDLVIRDKELTGALIASLINCYIRDNAAVDGISLHLQDICPLLYST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 LQKELQEQLKITTFKDLVIRDKELTGALIASLINCYIRDNAAVDGISLHLQDICPLLYST
     810       820       830       840       850       860         

              820       830       840       850       860       870
pF1KA0 DDAICSKANELLQRSRQVQNKTEKERMLRESLKEYQKISNQVDLSNVCAQYRQVRFYEGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 DDAICSKANELLQRSRQVQNKTEKERMLRESLKEYQKISNQVDLSNVCAQYRQVRFYEGV
     870       880       890       900       910       920         

              880       890       900       910       920       930
pF1KA0 VELSLTAAEKKDPQGLGLHFYKHGEPEEDIVGLQAFQERLNSYKCITDTLQELVNQSKAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 VELSLTAAEKKDPQGLGLHFYKHGEPEEDIVGLQAFQERLNSYKCITDTLQELVNQSKAA
     930       940       950       960       970       980         

              940       950       960       970       980       990
pF1KA0 PQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLSQRSKDELFSIALYNWLIQVDLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 PQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLSQRSKDELFSIALYNWLIQVDLA
     990      1000      1010      1020      1030      1040         

             1000      1010      1020      1030      1040      1050
pF1KA0 DKLLQVASPFLEPHLVRMAKVDQNRVRYMDLLWRYYEKNRSFSNAARVLSRLADMHSTEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 DKLLQVASPFLEPHLVRMAKVDQNRVRYMDLLWRYYEKNRSFSNAARVLSRLADMHSTEI
    1050      1060      1070      1080      1090      1100         

             1060      1070      1080      1090      1100      1110
pF1KA0 SLQQRLEYIARAILSAKSSTAISSIAADGEFLHELEEKMEVARIQLQIQETLQRQYSHHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 SLQQRLEYIARAILSAKSSTAISSIAADGEFLHELEEKMEVARIQLQIQETLQRQYSHHS
    1110      1120      1130      1140      1150      1160         

             1120      1130      1140      1150      1160      1170
pF1KA0 SVQDAVSQLDSELMDITKLYGEFADPFKLAECKLAIIHCAGYSDPILVQTLWQDIIEKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 SVQDAVSQLDSELMDITKLYGEFADPFKLAECKLAIIHCAGYSDPILVQTLWQDIIEKEL
    1170      1180      1190      1200      1210      1220         

             1180      1190      1200      1210      1220      1230
pF1KA0 SDSVTLSSSDRMHALSLKIVLLGKIYAGTPRFFPLDFIVQFLEQQVCTLNWDVGFVIQTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 SDSVTLSSSDRMHALSLKIVLLGKIYAGTPRFFPLDFIVQFLEQQVCTLNWDVGFVIQTM
    1230      1240      1250      1260      1270      1280         

             1240      1250      1260      1270      1280      1290
pF1KA0 NEIGVPLPRLLEVYDQLFKSRDPFWNRMKKPLHLLDCIHVLLIRYVENPSQVLNCERRRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 NEIGVPLPRLLEVYDQLFKSRDPFWNRMKKPLHLLDCIHVLLIRYVENPSQVLNCERRRF
    1290      1300      1310      1320      1330      1340         

             1300      1310      1320      1330  
pF1KA0 TNLCLDAVCGYLVELQSMSSSVAVQAITGNFKSLQAKLERLH
       ::::::::::::::::::::::::::::::::::::::::::
NP_705 TNLCLDAVCGYLVELQSMSSSVAVQAITGNFKSLQAKLERLH
    1350      1360      1370      1380      1390 

>>XP_011512467 (OMIM: 606694,615770) PREDICTED: nuclear   (892 aa)
 initn: 5544 init1: 5469 opt: 5469  Z-score: 4356.7  bits: 817.9 E(85289):    0
Smith-Waterman score: 5469; 99.5% identity (100.0% similar) in 821 aa overlap (1-821:60-880)

                                             10        20        30
pF1KA0                               MSDMDYPLQGPGLLSVPNLPEISSIRRVPL
                                     ::::::::::::::::::::::::::::::
XP_011 IDRQLQEDRMYPDLSELLMVSAPNNPTVSGMSDMDYPLQGPGLLSVPNLPEISSIRRVPL
      30        40        50        60        70        80         

               40        50        60        70        80        90
pF1KA0 PPELVEQFGHMQCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPELVEQFGHMQCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGL
      90       100       110       120       130       140         

              100       110       120       130       140       150
pF1KA0 VKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQTGSGVLNDSLSGGMQLLPDPLYSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQTGSGVLNDSLSGGMQLLPDPLYSLP
     150       160       170       180       190       200         

              160       170       180       190       200       210
pF1KA0 TDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLSFLVPSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLSFLVPSLL
     210       220       230       240       250       260         

              220       230       240       250       260       270
pF1KA0 QFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQGMSRVASVSQNAIVSAAGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQGMSRVASVSQNAIVSAAGN
     270       280       290       300       310       320         

              280       290       300       310       320       330
pF1KA0 IARTIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTCPFRQPLARPNTLTLVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IARTIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTCPFRQPLARPNTLTLVH
     330       340       350       360       370       380         

              340       350       360       370       380       390
pF1KA0 VRLPPGFSASSTVEKPSKVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VRLPPGFSASSTVEKPSKVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQ
     390       400       410       420       430       440         

              400       410       420       430       440       450
pF1KA0 MTAGVDGHSWALSAIDELKVDKIITPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTAGVDGHSWALSAIDELKVDKIITPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSL
     450       460       470       480       490       500         

              460       470       480       490       500       510
pF1KA0 MFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQEDQACATCLILACSTAACDREVSAWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQEDQACATCLILACSTAACDREVSAWA
     510       520       530       540       550       560         

              520       530       540       550       560       570
pF1KA0 TRAFFRYGGEAQMRFPTTLPPPSNVGPILGSPVYSSSPVPSGSPYPNPSFLGTPSHGIQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TRAFFRYGGEAQMRFPTTLPPPSNVGPILGSPVYSSSPVPSGSPYPNPSFLGTPSHGIQP
     570       580       590       600       610       620         

              580       590       600       610       620       630
pF1KA0 PAMSTPVCALGNPATQATNMSCVTGPEIVYSGKHNGICIYFSRIMGNIWDASLVVERIFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PAMSTPVCALGNPATQATNMSCVTGPEIVYSGKHNGICIYFSRIMGNIWDASLVVERIFK
     630       640       650       660       670       680         

              640       650       660       670       680       690
pF1KA0 SGNREITAIESSVPCQLLESVLQELKGLQEFLDRNSQFAGGPLGNPNTTAKVQQRLIGFM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGNREITAIESSVPCQLLESVLQELKGLQEFLDRNSQFAGGPLGNPNTTAKVQQRLIGFM
     690       700       710       720       730       740         

              700       710       720       730       740       750
pF1KA0 RPENGNPQQMQQELQRKFHEAQLSEKISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RPENGNPQQMQQELQRKFHEAQLSEKISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAE
     750       760       770       780       790       800         

              760       770       780       790       800       810
pF1KA0 LQKELQEQLKITTFKDLVIRDKELTGALIASLINCYIRDNAAVDGISLHLQDICPLLYST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQKELQEQLKITTFKDLVIRDKELTGALIASLINCYIRDNAAVDGISLHLQDICPLLYST
     810       820       830       840       850       860         

              820       830       840       850       860       870
pF1KA0 DDAICSKANELLQRSRQVQNKTEKERMLRESLKEYQKISNQVDLSNVCAQYRQVRFYEGV
       :::::::....                                                 
XP_011 DDAICSKVEKINKSVSHGLPAAQ                                     
     870       880       890                                       

>>NP_001265241 (OMIM: 606694,615770) nuclear pore comple  (1327 aa)
 initn: 5055 init1: 5055 opt: 5061  Z-score: 4029.6  bits: 757.9 E(85289): 1e-217
Smith-Waterman score: 8282; 95.2% identity (95.2% similar) in 1332 aa overlap (1-1332:60-1327)

                                             10        20        30
pF1KA0                               MSDMDYPLQGPGLLSVPNLPEISSIRRVPL
                                     ::::::::::::::::::::::::::::::
NP_001 IDRQLQEDRMYPDLSELLMVSAPNNPTVSGMSDMDYPLQGPGLLSVPNLPEISSIRRVPL
      30        40        50        60        70        80         

               40        50        60        70        80        90
pF1KA0 PPELVEQFGHMQCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPELVEQFGHMQCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGL
      90       100       110       120       130       140         

              100       110       120       130       140       150
pF1KA0 VKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQTGSGVLNDSLSGGMQLLPDPLYSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQTGSGVLNDSLSGGMQLLPDPLYSLP
     150       160       170       180       190       200         

              160       170       180       190       200       210
pF1KA0 TDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLSFLVPSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLSFLVPSLL
     210       220       230       240       250       260         

              220       230       240       250       260       270
pF1KA0 QFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQGMSRVASVSQNAIVSAAGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQGMSRVASVSQNAIVSAAGN
     270       280       290       300       310       320         

              280       290       300       310       320       330
pF1KA0 IARTIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTCPFRQPLARPNTLTLVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IARTIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTCPFRQPLARPNTLTLVH
     330       340       350       360       370       380         

              340       350       360       370       380       390
pF1KA0 VRLPPGFSASSTVEKPSKVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRLPPGFSASSTVEKPSKVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQ
     390       400       410       420       430       440         

              400       410       420       430       440       450
pF1KA0 MTAGVDGHSWALSAIDELKVDKIITPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTAGVDGHSWALSAIDELKVDKIITPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSL
     450       460       470       480       490       500         

              460       470       480       490       500       510
pF1KA0 MFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQEDQACATCLILACSTAACDREVSAWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQEDQACATCLILACSTAACDREVSAWA
     510       520       530       540       550       560         

              520       530       540       550       560       570
pF1KA0 TRAFFRYGGEAQMRFPTTLPPPSNVGPILGSPVYSSSPVPSGSPYPNPSFLGTPSHGIQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TRAFFRYGGEAQMRFPTTLPPPSNVGPILGSPVYSSSPVPSGSPYPNPSFLGTPSHGIQP
     570       580       590       600       610       620         

              580       590       600       610       620       630
pF1KA0 PAMSTPVCALGNPATQATNMSCVTGPEIVYSGKHNGICIYFSRIMGNIWDASLVVERIFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PAMSTPVCALGNPATQATNMSCVTGPEIVYSGKHNGICIYFSRIMGNIWDASLVVERIFK
     630       640       650       660       670       680         

              640       650       660       670       680       690
pF1KA0 SGNREITAIESSVPCQLLESVLQELKGLQEFLDRNSQFAGGPLGNPNTTAKVQQRLIGFM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGNREITAIESSVPCQLLESVLQELKGLQEFLDRNSQFAGGPLGNPNTTAKVQQRLIGFM
     690       700       710       720       730       740         

              700       710       720       730       740       750
pF1KA0 RPENGNPQQMQQELQRKFHEAQLSEKISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPENGNPQQMQQELQRKFHEAQLSEKISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAE
     750       760       770       780       790       800         

              760       770       780       790       800       810
pF1KA0 LQKELQEQLKITTFKDLVIRDKELTGALIASLINCYIRDNAAVDGISLHLQDICPLLYST
       :::                                                         
NP_001 LQK---------------------------------------------------------
     810                                                           

              820       830       840       850       860       870
pF1KA0 DDAICSKANELLQRSRQVQNKTEKERMLRESLKEYQKISNQVDLSNVCAQYRQVRFYEGV
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -------ANELLQRSRQVQNKTEKERMLRESLKEYQKISNQVDLSNVCAQYRQVRFYEGV
                   820       830       840       850       860     

              880       890       900       910       920       930
pF1KA0 VELSLTAAEKKDPQGLGLHFYKHGEPEEDIVGLQAFQERLNSYKCITDTLQELVNQSKAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VELSLTAAEKKDPQGLGLHFYKHGEPEEDIVGLQAFQERLNSYKCITDTLQELVNQSKAA
         870       880       890       900       910       920     

              940       950       960       970       980       990
pF1KA0 PQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLSQRSKDELFSIALYNWLIQVDLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLSQRSKDELFSIALYNWLIQVDLA
         930       940       950       960       970       980     

             1000      1010      1020      1030      1040      1050
pF1KA0 DKLLQVASPFLEPHLVRMAKVDQNRVRYMDLLWRYYEKNRSFSNAARVLSRLADMHSTEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKLLQVASPFLEPHLVRMAKVDQNRVRYMDLLWRYYEKNRSFSNAARVLSRLADMHSTEI
         990      1000      1010      1020      1030      1040     

             1060      1070      1080      1090      1100      1110
pF1KA0 SLQQRLEYIARAILSAKSSTAISSIAADGEFLHELEEKMEVARIQLQIQETLQRQYSHHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLQQRLEYIARAILSAKSSTAISSIAADGEFLHELEEKMEVARIQLQIQETLQRQYSHHS
        1050      1060      1070      1080      1090      1100     

             1120      1130      1140      1150      1160      1170
pF1KA0 SVQDAVSQLDSELMDITKLYGEFADPFKLAECKLAIIHCAGYSDPILVQTLWQDIIEKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVQDAVSQLDSELMDITKLYGEFADPFKLAECKLAIIHCAGYSDPILVQTLWQDIIEKEL
        1110      1120      1130      1140      1150      1160     

             1180      1190      1200      1210      1220      1230
pF1KA0 SDSVTLSSSDRMHALSLKIVLLGKIYAGTPRFFPLDFIVQFLEQQVCTLNWDVGFVIQTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDSVTLSSSDRMHALSLKIVLLGKIYAGTPRFFPLDFIVQFLEQQVCTLNWDVGFVIQTM
        1170      1180      1190      1200      1210      1220     

             1240      1250      1260      1270      1280      1290
pF1KA0 NEIGVPLPRLLEVYDQLFKSRDPFWNRMKKPLHLLDCIHVLLIRYVENPSQVLNCERRRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NEIGVPLPRLLEVYDQLFKSRDPFWNRMKKPLHLLDCIHVLLIRYVENPSQVLNCERRRF
        1230      1240      1250      1260      1270      1280     

             1300      1310      1320      1330  
pF1KA0 TNLCLDAVCGYLVELQSMSSSVAVQAITGNFKSLQAKLERLH
       ::::::::::::::::::::::::::::::::::::::::::
NP_001 TNLCLDAVCGYLVELQSMSSSVAVQAITGNFKSLQAKLERLH
        1290      1300      1310      1320       




1332 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 10:19:35 2016 done: Thu Nov  3 10:19:37 2016
 Total Scan time: 17.760 Total Display time:  0.250

Function used was FASTA [36.3.4 Apr, 2011]
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