Result of FASTA (ccds) for pF1KA0361
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0361, 1338 aa
  1>>>pF1KA0361 1338 - 1338 aa - 1338 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1581+/-0.000816; mu= 19.7326+/- 0.050
 mean_var=92.9112+/-18.954, 0's: 0 Z-trim(109.7): 7  B-trim: 508 in 1/52
 Lambda= 0.133058
 statistics sampled from 11066 (11070) to 11066 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.34), width:  16
 Scan time:  5.290

The best scores are:                                      opt bits E(32554)
CCDS11136.1 PFAS gene_id:5198|Hs108|chr17          (1338) 9149 1767.1       0


>>CCDS11136.1 PFAS gene_id:5198|Hs108|chr17               (1338 aa)
 initn: 9149 init1: 9149 opt: 9149  Z-score: 9483.5  bits: 1767.1 E(32554):    0
Smith-Waterman score: 9149; 99.7% identity (99.7% similar) in 1338 aa overlap (1-1338:1-1338)

               10        20        30        40        50        60
pF1KA0 MSPVLHFYVRPSGHEGAASGHTRRKLQGKLPELQGVETELCYNVNWTAEALPSAEETKKL
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS11 MSPVLHFYVRPSGHEGAAPGHTRRKLQGKLPELQGVETELCYNVNWTAEALPSAEETKKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 MWLFGCPLLLDDVARESWLLPGSNDLLLEVGPRLNFSTPTSTNIVSVCRATGLGPVDRVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MWLFGCPLLLDDVARESWLLPGSNDLLLEVGPRLNFSTPTSTNIVSVCRATGLGPVDRVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 TTRRYRLSFAHPPSAEVEAIALATLHDRMTEQHFPHPIQSFSPESMPEPLNGPINILGEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TTRRYRLSFAHPPSAEVEAIALATLHDRMTEQHFPHPIQSFSPESMPEPLNGPINILGEG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 RLALEKANQELGLALDSWDLDFYTKRFQELQRNPSTVEAFDLAQSNSEHSRHWFFKGQLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RLALEKANQELGLALDSWDLDFYTKRFQELQRNPSTVEAFDLAQSNSEHSRHWFFKGQLH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 VDGQKLVHSLFESIMSTQESSNPNNVLKFCDNSSAIQGKEVRFLRPEDPTRPSRFQQQQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VDGQKLVHSLFESIMSTQESSNPNNVLKFCDNSSAIQGKEVRFLRPEDPTRPSRFQQQQG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 LRHVVFTAETHNFPTGVCPFSGATTGTGGRIRDVQCTGRGAHVVAGTAGYCFGNLHIPGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LRHVVFTAETHNFPTGVCPFSGATTGTGGRIRDVQCTGRGAHVVAGTAGYCFGNLHIPGY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 NLPWEDLSFQYPGNFARPLEVAIEASNGASDYGNKFGEPVLAGFARSLGLQLPDGQRREW
       :::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NLPWEDPSFQYPGNFARPLEVAIEASNGASDYGNKFGEPVLAGFARSLGLQLPDGQRREW
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 IKPIMFSGGIGSMEADHISKEAPEPGMEVVKVGGPVYRIGVGGGAASSVQVQGDNTSDLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IKPIMFSGGIGSMEADHISKEAPEPGMEVVKVGGPVYRIGVGGGAASSVQVQGDNTSDLD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 FGAVQRGDPEMEQKMNRVIRACVEAPKGNPICSLHDQGAGGNGNVLKELSDPAGAIIYTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FGAVQRGDPEMEQKMNRVIRACVEAPKGNPICSLHDQGAGGNGNVLKELSDPAGAIIYTS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 RFQLGDPTLNALEIWGAEYQESNALLLRSPNRDFLTHVSARERCPACFVGTITGDRRIVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RFQLGDPTLNALEIWGAEYQESNALLLRSPNRDFLTHVSARERCPACFVGTITGDRRIVL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 VDDRECPVRRNGQGDAPPTPPPTPVDLELEWVLGKMPRKEFFLQRKPPMLQPLALPPGLS
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS11 VDDRECPVRRNGQGDAPPTPLPTPVDLELEWVLGKMPRKEFFLQRKPPMLQPLALPPGLS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 VHQALERVLRLPAVASKRYLTNKVDRSVGGLVAQQQCVGPLQTPLADVAVVALSHEELIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VHQALERVLRLPAVASKRYLTNKVDRSVGGLVAQQQCVGPLQTPLADVAVVALSHEELIG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 AATALGEQPVKSLLDPKVAARLAVAEALTNLVFALVTDLRDVKCSGNWMWAAKLPGEGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AATALGEQPVKSLLDPKVAARLAVAEALTNLVFALVTDLRDVKCSGNWMWAAKLPGEGAA
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 LADACEAMVAVMAALGVAVDGGKDSLSMAARVGTETVRAPGSLVISAYAVCPDITATVTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LADACEAMVAVMAALGVAVDGGKDSLSMAARVGTETVRAPGSLVISAYAVCPDITATVTP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 DLKHPEGRGHLLYVALSPGQHRLGGTALAQCFSQLGEHPPDLDLPENLVRAFSITQGLLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DLKHPEGRGHLLYVALSPGQHRLGGTALAQCFSQLGEHPPDLDLPENLVRAFSITQGLLK
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 DRLLCSGHDVSDGGLVTCLLEMAFAGNCGLQVDVPVPRVDVLSVLFAEEPGLVLEVQEPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DRLLCSGHDVSDGGLVTCLLEMAFAGNCGLQVDVPVPRVDVLSVLFAEEPGLVLEVQEPD
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 LAQVLKRYRDAGLHCLELGHTGEAGPHAMVRVSVNGAVVLEEPVGELRALWEETSFQLDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LAQVLKRYRDAGLHCLELGHTGEAGPHAMVRVSVNGAVVLEEPVGELRALWEETSFQLDR
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA0 LQAEPRCVAEEERGLRERMGPSYCLPPTFPKASVPREPGGPSPRVAILREEGSNGDREMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LQAEPRCVAEEERGLRERMGPSYCLPPTFPKASVPREPGGPSPRVAILREEGSNGDREMA
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA0 DAFHLAGFEVWDVTMQDLCSGAIGLDTFRGVAFVGGFSYADVLGSAKGWAAAVTFHPRAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DAFHLAGFEVWDVTMQDLCSGAIGLDTFRGVAFVGGFSYADVLGSAKGWAAAVTFHPRAG
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA0 AELRRFRKRPDTFSLGVCNGCQLLALLGWVGGDPNEDAAEMGPDSQPARPGLLLRHNLSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AELRRFRKRPDTFSLGVCNGCQLLALLGWVGGDPNEDAAEMGPDSQPARPGLLLRHNLSG
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA0 RYESRWASVRVGPGPALMLRGMEGAVLPVWSAHGEGYVAFSSPELQAQIEARGLAPLHWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RYESRWASVRVGPGPALMLRGMEGAVLPVWSAHGEGYVAFSSPELQAQIEARGLAPLHWA
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA0 DDDGNPTEQYPLNPNGSPGGVAGICSCDGRHLAVMPHPERAVRPWQWAWRPPPFDTLTTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DDDGNPTEQYPLNPNGSPGGVAGICSCDGRHLAVMPHPERAVRPWQWAWRPPPFDTLTTS
             1270      1280      1290      1300      1310      1320

             1330        
pF1KA0 PWLQLSINARNWTLEGSC
       ::::: ::::::::::::
CCDS11 PWLQLFINARNWTLEGSC
             1330        




1338 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 09:25:24 2016 done: Thu Nov  3 09:25:25 2016
 Total Scan time:  5.290 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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