Result of FASTA (ccds) for
pF1KSDB1496
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDB1496, 277 aa
1>>>pF1KSDB1496 277 - 277 aa - 277 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2883+/-0.000835; mu= 14.9573+/- 0.050
mean_var=60.8086+/-12.023, 0's: 0 Z-trim(106.4): 19 B-trim: 43 in 1/48
Lambda= 0.164472
statistics sampled from 8926 (8939) to 8926 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.275), width: 16
Scan time: 2.060
The best scores are: opt bits E(32554)
CCDS14513.1 PLP1 gene_id:5354|Hs108|chrX ( 277) 1884 455.4 2.1e-128
CCDS14514.1 PLP1 gene_id:5354|Hs108|chrX ( 242) 835 206.4 1.6e-53
CCDS48084.1 GPM6B gene_id:2824|Hs108|chrX ( 246) 503 127.6 8.3e-30
CCDS14158.1 GPM6B gene_id:2824|Hs108|chrX ( 265) 496 126.0 2.8e-29
CCDS35207.1 GPM6B gene_id:2824|Hs108|chrX ( 305) 496 126.0 3.2e-29
CCDS35206.1 GPM6B gene_id:2824|Hs108|chrX ( 328) 496 126.0 3.4e-29
CCDS54822.1 GPM6A gene_id:2823|Hs108|chr4 ( 267) 455 116.3 2.4e-26
CCDS58936.1 GPM6A gene_id:2823|Hs108|chr4 ( 271) 448 114.6 7.7e-26
CCDS3824.1 GPM6A gene_id:2823|Hs108|chr4 ( 278) 448 114.6 7.8e-26
>>CCDS14513.1 PLP1 gene_id:5354|Hs108|chrX (277 aa)
initn: 1884 init1: 1884 opt: 1884 Z-score: 2418.8 bits: 455.4 E(32554): 2.1e-128
Smith-Waterman score: 1884; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KSD MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF
190 200 210 220 230 240
250 260 270
pF1KSD IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
:::::::::::::::::::::::::::::::::::::
CCDS14 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
250 260 270
>>CCDS14514.1 PLP1 gene_id:5354|Hs108|chrX (242 aa)
initn: 833 init1: 833 opt: 835 Z-score: 1074.5 bits: 206.4 E(32554): 1.6e-53
Smith-Waterman score: 1538; 87.4% identity (87.4% similar) in 277 aa overlap (1-277:1-242)
10 20 30 40 50 60
pF1KSD MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSAT----
70 80 90 100 110
130 140 150 160 170 180
pF1KSD QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT
:::::::::::::::::::::::::::::
CCDS14 -------------------------------FVGITYALTVVWLLVFACSAVPVYIYFNT
120 130 140
190 200 210 220 230 240
pF1KSD WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF
150 160 170 180 190 200
250 260 270
pF1KSD IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
:::::::::::::::::::::::::::::::::::::
CCDS14 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
210 220 230 240
>>CCDS48084.1 GPM6B gene_id:2824|Hs108|chrX (246 aa)
initn: 940 init1: 503 opt: 503 Z-score: 648.6 bits: 127.6 E(32554): 8.3e-30
Smith-Waterman score: 906; 50.5% identity (72.4% similar) in 275 aa overlap (1-273:1-239)
10 20 30 40 50 60
pF1KSD MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
:: .::: .:: :.:.:::::: ::: :::::::::: ::.:: ..: .:: : .:.
CCDS48 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG
: .::. .:::::: :::::::: .:::::::::.::... :..::: ::. .:.
CCDS48 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM----
70 80 90 100 110
130 140 150 160 170 180
pF1KSD QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT
:: .::.: :.:: ::. :::::....:
CCDS48 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI
120 130 140
190 200 210 220 230
pF1KSD WTTCQSIAFPSKTSASIG--SLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFH
:.::. : : .:... : ..:.: :.::..::::::::.::: : .::.: :: :..:
CCDS48 WSTCEVIKSP-QTNGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYH
150 160 170 180 190 200
240 250 260 270
pF1KSD LFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
:::.: .::.::...:: .:.:.:::.::::. .:
CCDS48 LFIVACAGAGATVIALLIYMMATTYNYAVLKFKSREDCCTKF
210 220 230 240
>>CCDS14158.1 GPM6B gene_id:2824|Hs108|chrX (265 aa)
initn: 926 init1: 489 opt: 496 Z-score: 639.1 bits: 126.0 E(32554): 2.8e-29
Smith-Waterman score: 899; 50.4% identity (72.3% similar) in 274 aa overlap (2-273:21-258)
10 20 30 40
pF1KSD MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALT
: .::: .:: :.:.:::::: ::: :::::::::: ::.
CCDS14 MKPAMETAAEENTEQSQERKGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KSD GTEKLIETYFSKNYQDYEYLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIF
:: ..: .:: : .:. : .::. .:::::: :::::::: .:::::::::.::...
CCDS14 GTVAILEQHFSTNASDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELH
70 80 90 100 110 120
110 120 130 140 150 160
pF1KSD GDYKTTICGKGLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTV
:..::: ::. .:. :: .::.: :
CCDS14 GEFKTTACGRCISGM-----------------------------------FVFLTYVLGV
130 140
170 180 190 200 210
pF1KSD VWLLVFACSAVPVYIYFNTWTTCQSIAFPSKTSASIG--SLCADARMYGVLPWNAFPGKV
.:: ::. :::::....: :.::. : : .:... : ..:.: :.::..::::::::.
CCDS14 AWLGVFGFSAVPVFMFYNIWSTCEVIKSP-QTNGTTGVEQICVDIRQYGIIPWNAFPGKI
150 160 170 180 190 200
220 230 240 250 260 270
pF1KSD CGSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
::: : .::.: :: :..::::.: .::.::...:: .:.:.:::.::::. .:
CCDS14 CGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSREDCCTK
210 220 230 240 250 260
CCDS14 F
>>CCDS35207.1 GPM6B gene_id:2824|Hs108|chrX (305 aa)
initn: 926 init1: 489 opt: 496 Z-score: 638.2 bits: 126.0 E(32554): 3.2e-29
Smith-Waterman score: 899; 50.4% identity (72.3% similar) in 274 aa overlap (2-273:61-298)
10 20 30
pF1KSD MGLLECCARCLVGAPFASLVATGLCFFGVAL
: .::: .:: :.:.:::::: ::: ::::
CCDS35 RYHWMYPGSKNHQYHPVPTLGDRASPLSSPGCFECCIKCLGGVPYASLVATILCFSGVAL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KSD FCGCGHEALTGTEKLIETYFSKNYQDYEYLINVIHAFQYVIYGTASFFFLYGALLLAEGF
:::::: ::.:: ..: .:: : .:. : .::. .:::::: :::::::: .::::::
CCDS35 FCGCGHVALAGTVAILEQHFSTNASDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGF
100 110 120 130 140 150
100 110 120 130 140 150
pF1KSD YTTGAVRQIFGDYKTTICGKGLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDK
:::.::... :..::: ::. .:.
CCDS35 YTTSAVKELHGEFKTTACGRCISGM-----------------------------------
160 170
160 170 180 190 200
pF1KSD FVGITYALTVVWLLVFACSAVPVYIYFNTWTTCQSIAFPSKTSASIG--SLCADARMYGV
:: .::.: :.:: ::. :::::....: :.::. : : .:... : ..:.: :.::.
CCDS35 FVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSP-QTNGTTGVEQICVDIRQYGI
180 190 200 210 220 230
210 220 230 240 250 260
pF1KSD LPWNAFPGKVCGSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLK
.::::::::.::: : .::.: :: :..::::.: .::.::...:: .:.:.:::.::::
CCDS35 IPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLK
240 250 260 270 280 290
270
pF1KSD LMGRGTKF
. .:
CCDS35 FKSREDCCTKF
300
>>CCDS35206.1 GPM6B gene_id:2824|Hs108|chrX (328 aa)
initn: 776 init1: 489 opt: 496 Z-score: 637.7 bits: 126.0 E(32554): 3.4e-29
Smith-Waterman score: 859; 48.9% identity (70.7% similar) in 270 aa overlap (2-269:61-294)
10 20 30
pF1KSD MGLLECCARCLVGAPFASLVATGLCFFGVAL
: .::: .:: :.:.:::::: ::: ::::
CCDS35 RYHWMYPGSKNHQYHPVPTLGDRASPLSSPGCFECCIKCLGGVPYASLVATILCFSGVAL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KSD FCGCGHEALTGTEKLIETYFSKNYQDYEYLINVIHAFQYVIYGTASFFFLYGALLLAEGF
:::::: ::.:: ..: .:: : .:. : .::. .:::::: :::::::: .::::::
CCDS35 FCGCGHVALAGTVAILEQHFSTNASDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGF
100 110 120 130 140 150
100 110 120 130 140 150
pF1KSD YTTGAVRQIFGDYKTTICGKGLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDK
:::.::... :..::: ::. .:.
CCDS35 YTTSAVKELHGEFKTTACGRCISGM-----------------------------------
160 170
160 170 180 190 200
pF1KSD FVGITYALTVVWLLVFACSAVPVYIYFNTWTTCQSIAFPSKTSASIG--SLCADARMYGV
:: .::.: :.:: ::. :::::....: :.::. : : .:... : ..:.: :.::.
CCDS35 FVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSP-QTNGTTGVEQICVDIRQYGI
180 190 200 210 220 230
210 220 230 240 250 260
pF1KSD LPWNAFPGKVCGSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLK
.::::::::.::: : .::.: :: :..::::.: .::.::...:. :.. . :.: ::
CCDS35 IPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLK
240 250 260 270 280 290
270
pF1KSD LMGRGTKF
CCDS35 DASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT
300 310 320
>>CCDS54822.1 GPM6A gene_id:2823|Hs108|chr4 (267 aa)
initn: 447 init1: 250 opt: 455 Z-score: 586.5 bits: 116.3 E(32554): 2.4e-26
Smith-Waterman score: 674; 38.1% identity (65.8% similar) in 281 aa overlap (1-277:1-240)
10 20 30 40 50
pF1KSD MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYF--SKNYQDY
:: .::: .:: : :.:::.:: : . :::::::::::::.:: ....::: ... :
CCDS54 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD EYLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVT
....: :.::::: :. ::.:: ::..:::.::::.....::.: : ::.
CCDS54 LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGR-------
70 80 90 100 110
120 130 140 150 160 170
pF1KSD GGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYF
:.. : :. .:: . ..:: : : ...:::.::
CCDS54 ----------------------CVSAW------FIMLTYLFMLAWLGVTAFTSLPVYMYF
120 130 140
180 190 200 210 220 230
pF1KSD NTWTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVC--GSNLLSICKTAEFQMT
: :: :. . : . ..:: : :..:.. . :.: . :.: .:...:..::
CCDS54 NLWTICR-----NTTLVEGANLCLDLRQFGIVTIGE-EKKICTVSENFLRMCESTELNMT
150 160 170 180 190
240 250 260 270
pF1KSD FHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
:::::.:..::.:...... .... . :.: .: : :.
CCDS54 FHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKYEDIKSKEEQELHDIHSTRS
200 210 220 230 240 250
CCDS54 KERLNAYT
260
>>CCDS58936.1 GPM6A gene_id:2823|Hs108|chr4 (271 aa)
initn: 440 init1: 243 opt: 448 Z-score: 577.4 bits: 114.6 E(32554): 7.7e-26
Smith-Waterman score: 667; 37.9% identity (65.7% similar) in 280 aa overlap (2-277:6-244)
10 20 30 40 50
pF1KSD MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYF--SKN
: .::: .:: : :.:::.:: : . :::::::::::::.:: ....::: ...
CCDS58 MTDLEGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMART
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD YQDYEYLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLS
: ....: :.::::: :. ::.:: ::..:::.::::.....::.: : ::.
CCDS58 AGDTLDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGR---
70 80 90 100 110
120 130 140 150 160 170
pF1KSD ATVTGGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPV
:.. : :. .:: . ..:: : : ...::
CCDS58 --------------------------CVSAW------FIMLTYLFMLAWLGVTAFTSLPV
120 130 140
180 190 200 210 220 230
pF1KSD YIYFNTWTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVC--GSNLLSICKTAE
:.::: :: :.. : . ..:: : :..:.. . :.: . :.: .:...:
CCDS58 YMYFNLWTICRN-----TTLVEGANLCLDLRQFGIVTIGE-EKKICTVSENFLRMCESTE
150 160 170 180 190
240 250 260 270
pF1KSD FQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
..:::::::.:..::.:...... .... . :.: .: : :.
CCDS58 LNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKYEDIKSKEEQELHDIH
200 210 220 230 240 250
CCDS58 STRSKERLNAYT
260 270
>>CCDS3824.1 GPM6A gene_id:2823|Hs108|chr4 (278 aa)
initn: 440 init1: 243 opt: 448 Z-score: 577.2 bits: 114.6 E(32554): 7.8e-26
Smith-Waterman score: 667; 37.9% identity (65.7% similar) in 280 aa overlap (2-277:13-251)
10 20 30 40
pF1KSD MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIET
: .::: .:: : :.:::.:: : . :::::::::::::.:: ....:
CCDS38 MEENMEEGQTQKGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQT
10 20 30 40 50 60
50 60 70 80 90 100
pF1KSD YF--SKNYQDYEYLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTT
:: ... : ....: :.::::: :. ::.:: ::..:::.::::.....::.: :
CCDS38 YFEMARTAGDTLDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKIT
70 80 90 100 110 120
110 120 130 140 150 160
pF1KSD ICGKGLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVF
::. :.. : :. .:: . ..:: :
CCDS38 TCGR-----------------------------CVSAW------FIMLTYLFMLAWLGVT
130 140
170 180 190 200 210 220
pF1KSD ACSAVPVYIYFNTWTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVC--GSNLL
: ...:::.::: :: :.. : . ..:: : :..:.. . :.: . :.:
CCDS38 AFTSLPVYMYFNLWTICRN-----TTLVEGANLCLDLRQFGIVTIGE-EKKICTVSENFL
150 160 170 180 190
230 240 250 260 270
pF1KSD SICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
.:...:..:::::::.:..::.:...... .... . :.: .: : :.
CCDS38 RMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKYEDIKSKEE
200 210 220 230 240 250
CCDS38 QELHDIHSTRSKERLNAYT
260 270
277 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:41:23 2016 done: Thu Nov 3 08:41:23 2016
Total Scan time: 2.060 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]