GENSCAN 1.0	Date run:  3-Nov-116	Time: 08:35:43

Sequence gi568815597r:53667973_53938261 : 270289 bp : 44.32% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.11 PlyA -    995    990    6                               1.05
 1.10 Term -   4089   3983  107  1  2   92   49    25 0.470  -2.43
 1.09 Intr -   7234   7122  113  0  2   39   94   111 0.754   6.82
 1.08 Intr -  10304  10190  115  0  1   44   41   148 0.789   5.21
 1.07 Intr -  12120  12034   87  1  0   87   79    25 0.560   1.44
 1.06 Intr -  14317  14224   94  1  1   55   77    85 0.761   3.64
 1.05 Intr -  17017  16989   29  2  2   84   86    -1 0.297  -2.87
 1.04 Intr -  19660  19450  211  1  1  105   26    98 0.225   3.79
 1.03 Intr -  21592  21474  119  2  2   83   94    -6 0.556  -0.32
 1.02 Intr -  25732  25598  135  2  0   98   64    96 0.887   8.74
 1.01 Init -  51207  51096  112  0  1   77   80    81 0.136   6.57
 1.00 Prom -  64576  64537   40                              -4.86

 2.03 PlyA -  65016  65011    6                               1.05
 2.02 Term -  70134  69697  438  0  0  113   33   293 0.884  21.58
 2.01 Init -  71351  71133  219  2  0   73   78   279 0.998  22.03
 2.00 Prom -  90452  90413   40                              -3.06

 3.04 PlyA -  93386  93381    6                               1.05
 3.03 Term -  95699  95618   82  1  1   76   42    38 0.072  -4.83
 3.02 Intr - 104517 104357  161  0  2   88  100   111 0.562  11.09
 3.01 Init - 170595 170233  363  0  0   88   77   195 0.763  13.53
 3.00 Prom - 170746 170707   40                              -5.16

 4.00 Prom + 174397 174436   40                              -6.76
 4.01 Init + 185780 185849   70  1  1   61   97    53 0.811   4.74
 4.02 Intr + 185933 185997   65  0  2  120   96   -47 0.664  -2.26
 4.03 Intr + 187191 187377  187  2  1   52   92   120 0.811   8.06
 4.04 Term + 189026 189165  140  0  2   37   41   125 0.866   0.83
 4.05 PlyA + 189704 189709    6                               1.05

 5.07 PlyA - 190493 190488    6                               1.05
 5.06 Term - 192181 192092   90  1  0  143   39    39 0.945   2.22
 5.05 Intr - 198410 198228  183  2  0  125   52    90 0.772   9.08
 5.04 Intr - 198952 198786  167  2  2   79   92    95 0.255   8.68
 5.03 Intr - 203516 203400  117  0  0  118   81    99 0.657  12.64
 5.02 Intr - 205278 205162  117  1  0   94   34    90 0.572   4.64
 5.01 Init - 206302 206275   28  1  1   94   91   -21 0.267  -1.14
 5.00 Prom - 206403 206364   40                              -4.36

 6.00 Prom + 210570 210609   40                              -3.26
 6.01 Init + 226239 226575  337  2  1  104   77   290 0.464  25.64
 6.02 Intr + 238123 238322  200  2  2   92   36   203 0.513  14.57
 6.03 Term + 241959 242027   69  2  0   98   33    66 0.294   0.04
 6.04 PlyA + 244030 244035    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 108186 108184    3  0  0  113   81     0 0.911   1.80
S.002 Sngl + 147634 148023  390  0  0   54   32   182 0.905   5.42


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:53667973_53938261|GENSCAN_predicted_peptide_1|373_aa
MRRGGCIVSANDGAEAVFKDLGSGRFQTDPAQESFLPVPPERLLYDAHTLGDPEAGTACN
QIAFLPTELMLLREWKFGSVGGGRKVTVQILLGLPVSVVTCSGLAGSQLRMFLGGKIHGT
QQLGGPIACKQTLWFGEENAQNHPTAGGPSGSSSALTGERGCTRVFHEELLWGLNCARPD
TGLVKRGGLVGPASELWLISPPVSAVSAAACWMAEGVKNAWLQAGLELESESGDIWAGDW
GSGEFDLAPDLEEFKDMWPGWGERFFVQGGPLGICGELQLSVALQQGWQAPQGTSVGDII
RVWERGYFGEFQDAGVIRTLTRNPSQAKLVAADNQLSPVGHNQLGQGLLCIPGYSSQREK
LRISSSYSRRKWE

>gi568815597r:53667973_53938261|GENSCAN_predicted_CDS_1|1122_bp
atgaggagaggtggctgcattgtttctgccaacgatggggcagaggcagtgttcaaggac
ctgggcagtggtcgttttcaaactgatcctgcccaagagagcttcttgccagtgccgcca
gagcgcctgctttatgatgcccacacccttggcgaccccgaggccgggactgcttgtaat
cagattgccttcctccccactgagctcatgctgctgagggaatggaaatttggatctgtg
ggcgggggcagaaaggtcacagtgcagatcttgctgggactccctgtctctgtggtcact
tgctctggtctggccggctctcagctcaggatgtttctgggtgggaagatacacgggact
caacagctggggggacccattgcatgtaagcagaccttgtggtttggggaagagaacgca
cagaaccacccgacagcagggggcccttcaggaagctcctcggctctcacaggagagcgg
ggatgtactcgggtcttccatgaggagttattgtgggggctcaactgtgcgaggcctgac
acgggcttggtgaagcggggcgggctggttggaccggcctcagagctctggcttatctcc
cctcccgtgtcagctgtgtcagcggctgcttgctggatggctgaaggagtgaagaatgca
tggctgcaagcgggtctggagttggagtcggagtccggtgacatttgggctggggactgg
ggatctggagaattcgacctggcacctgaccttgaggagttcaaagacatgtggcctgga
tggggtgagaggttcttcgtgcaagggggccctctgggcatctgcggcgagctgcagctc
agcgtggctctacagcaagggtggcaggcacctcaggggacatctgttggggacatcatc
agggtttgggaaagaggctattttggggaatttcaggatgctggagttatcaggaccctc
acccgtaaccccagtcaagcaaagctggtggctgcagacaaccagctgtctccagttggc
cacaaccagcttggccagggcctgctgtgtatcccaggctatagctcacagagggaaaag
ctgagaatttcctcatcctacagtaggaggaagtgggaatga

>gi568815597r:53667973_53938261|GENSCAN_predicted_peptide_2|218_aa
MPRPRAAIGLSRAAAASQWLERLLGRRGPAPVPRGTAPQDAAAAAAAAAAAGAAAPVEAR
RAGRPAICSCRCEEPGATPSRAPRPGAMHCEVAEAHSDKRPKEAPGAPGPDRGPASLGAH
MAFRVTVSGGGCGDRGPRDLLARPPAPPPRAHDLLRPRSPRDYGPSKAAAAGKGEFGPAN
VPGGSCGDSGCPASPPRARESLVELSSEFLSFSLIVWD

>gi568815597r:53667973_53938261|GENSCAN_predicted_CDS_2|657_bp
atgccccgccctcgcgccgcgattggcctgagccgggcggccgcggccagccagtggctg
gagcggctgttgggcagacgcgggcccgcccccgtcccccggggaaccgccccgcaggac
gcggcggcggcggcggcggctgcggcggctgcgggggctgctgcgccagtggaggcgcgc
cgagccgggcgcccagcgatctgcagctgccgctgcgaggagcccggcgcgacccccagc
cgtgcgccccgccccggcgccatgcattgcgaggtggctgaggcacactcggacaagagg
cctaaggaggcccctggtgcgcccggccccgaccgcggccccgccagcctcggcgcgcac
atggccttcagggtcaccgtgagtggcggcggctgcggggacaggggcccgcgggacctg
ctagcccggccgcctgcgccgccaccgcgcgcccacgacctcctccggccccgcagtccc
cgagactacggtccatccaaggccgccgccgccgggaagggtgagttcggccctgccaac
gtgcctggcggctcctgtggagattcgggctgcccggcgtcgccaccgcgtgctcgggag
agcttggtggaactttcttcggagttcctcagtttctctcttattgtttgggactag

>gi568815597r:53667973_53938261|GENSCAN_predicted_peptide_3|201_aa
MQRRHLLLAPRWTLLRRDRLVARGRFLELQPRLRDVSARQSWPVELVQTKPRRDGLEPGP
GFAQAAFEADPAGSSWGLPAFELRWRAGARSPVRPRLGAAISMATAVSRPCAGRSRDILW
RAVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLKAVWLD
RPQVVMLSLLTCILPDFECAL

>gi568815597r:53667973_53938261|GENSCAN_predicted_CDS_3|606_bp
atgcagcgccgccacctgcttctggcgccccgctggaccctgcttcgaagggaccgtttg
gtcgccagagggcggttcctggagttacagccgcgtttgcgggacgtgtctgcgcggcag
tcctggcctgttgagcttgtccagacgaagcctcgcagggatgggttggagcctgggccg
ggcttcgctcaggcagcgtttgaggcagacccagcagggtcctcctggggccttcctgcc
tttgaactgcggtggcgggcgggcgcacggtctcctgtacgccctagactaggggccgcc
atctccatggccacggccgtgagccggccctgcgccggcaggtcgcgggacatactgtgg
cgcgcagtcgacaagtactttaagcttcctcatgcttccagtaaaccaccccggatttca
ggaagccttgtggacacttcatataaaacattaagatttgcattcagagcatcactgaaa
actgccatctatcgaataactactacatttggtgaacatctgaaagctgtgtggctggac
cgccctcaagtggtcatgctctccctgctcacatgtattttaccagattttgagtgtgcc
ttataa

>gi568815597r:53667973_53938261|GENSCAN_predicted_peptide_4|153_aa
MKEPKALISLLVTINLGSETLNKAVCSKSMSRLGKNMKTRKFPSQEDLMTKDSPEALSAS
LIKALITLRYDYLLMALLRTAPPVTAPGKLTPIWMRSQALKPKQGFPDSIASLSLYGFDE
VSDHTERPTWQATEGGLQMTVSKKALILRSHRN

>gi568815597r:53667973_53938261|GENSCAN_predicted_CDS_4|462_bp
atgaaagaacctaaagccctgatcagccttttagtaaccatcaacttgggttctgaaacg
ctaaataaagctgtctgttccaaatcaatgtcaagactagggaagaatatgaagactaga
aaattcccttctcaggaggatttaatgacaaaggactctccagaagccctctctgcatca
ttaattaaagccctgatcacactgcgatatgattatctgctgatggccctcctccggaca
gccccacctgtcactgcccctggaaagctcaccccaatctggatgcggtctcaagccctc
aagccaaagcagggcttcccagactcgattgcctctctctccctttatggctttgatgaa
gtgagtgatcatacagagaggcccacgtggcaagcaactgagggtggtctccaaatgacc
gtcagcaagaaggccctcattctacgaagccacaggaattga

>gi568815597r:53667973_53938261|GENSCAN_predicted_peptide_5|233_aa
MAGPGMSGCRTLYYLLRLDILLIVSPECMGALEAVTVSLLPIIVSPAEGPFWICATLVFA
IAISGNLSNFLIHLGEKTYHYVPEFRKVSIAATIIYAYAWLVPLALWGFLMWRNSKVMNI
VSYSFLEIVCVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGISGSLLAMTFWPAVRED
NRRVALATIVTIVLLHMLLSVGCLAYFFDAPEMDHLPTTTATPNQTVAAAKSS

>gi568815597r:53667973_53938261|GENSCAN_predicted_CDS_5|702_bp
atggcaggtcctgggatgagtgggtgtcgcaccctgtactaccttctgagattagatatt
ttattgatcgtctccccggagtgcatgggtgcactagaggcagtgactgtgtctctgttg
cccatcatcgtgtccccagcagagggccccttttggatatgtgccacgttggtctttgcc
atagcaattagtgggaatctttccaacttcttgatccatctgggagagaagacgtaccat
tatgtgcccgaattccgaaaagtgtccatagcagctaccatcatctatgcctatgcctgg
ctggttcctcttgcactctggggtttcctcatgtggagaaacagcaaagttatgaacatc
gtctcctattcatttctggagattgtgtgtgtctatggatattccctcttcatttatatc
cccaccgcaatactgtggattatcccccagaaagctgttcgttggattctagtcatgatt
gccctgggcatctcaggatctctcttggcaatgacattttggccagctgttcgtgaggat
aaccgacgcgttgcattggccacaattgtgacaattgtgttgctccatatgctgctttct
gtgggctgcttggcatacttttttgatgcaccagagatggaccatctcccaacaactaca
gctactccaaaccaaacagttgctgcagccaagtccagctaa

>gi568815597r:53667973_53938261|GENSCAN_predicted_peptide_6|201_aa
MGLPQPGLWLKRLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTGMTRNPHFSHDN
WIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRCNIWEFMQDGWAFKNN
MDIRNHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKG
KSGPWNYNPEEVRAVLEKLHS

>gi568815597r:53667973_53938261|GENSCAN_predicted_CDS_6|606_bp
atggggctgccccagccagggctgtggctgaagaggctctgggtgctcttggaggtggct
gtgcatgtggtcgtgggtaaagtgcttctgatattgtttccagacagagtcaagcggaac
atcctggccatgggcgagaagacgggtatgaccaggaacccccatttcagccacgacaac
tggataccaacctttttcagcacccagtatttctggttcgtcttgaaggtccgttggcag
cgactagaggacacgactgagctagggggtctggccccaaactgcccggtggtccgcctc
tcaggacagaggtgcaacatttgggagtttatgcaagatggctgggcttttaagaacaac
atggacatcagaaatcaccagaaccttcaggatcgcctgcaggcagcccatctactgctg
gccaggagcccccagtgccctgtggtggtggacaccatgcagaaccagagcagccagctc
tacgcagcactgcctgagaggctctacataatccaggagggcaggatcctctacaagggt
aaatctggcccttggaactacaacccagaggaagttcgtgctgttctggaaaagctccac
agttaa