Result of FASTA (ccds) for pF1KSDB0062
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDB0062, 670 aa
  1>>>pF1KSDB0062 670 - 670 aa - 670 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5716+/-0.000915; mu= 13.1665+/- 0.055
 mean_var=82.9029+/-16.467, 0's: 0 Z-trim(106.7): 22  B-trim: 0 in 0/52
 Lambda= 0.140861
 statistics sampled from 9121 (9135) to 9121 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.281), width:  16
 Scan time:  3.850

The best scores are:                                      opt bits E(32554)
CCDS4004.1 RAD17 gene_id:5884|Hs108|chr5           ( 670) 4471 918.7       0
CCDS4003.1 RAD17 gene_id:5884|Hs108|chr5           ( 681) 4452 914.8       0
CCDS4005.1 RAD17 gene_id:5884|Hs108|chr5           ( 584) 3882 799.0       0
CCDS47226.1 RAD17 gene_id:5884|Hs108|chr5          ( 505) 3358 692.5 3.9e-199


>>CCDS4004.1 RAD17 gene_id:5884|Hs108|chr5                (670 aa)
 initn: 4471 init1: 4471 opt: 4471  Z-score: 4908.9  bits: 918.7 E(32554):    0
Smith-Waterman score: 4471; 100.0% identity (100.0% similar) in 670 aa overlap (1-670:1-670)

               10        20        30        40        50        60
pF1KSD MNQVTDWVDPSFDDFLECSGVSTITATSLGVNNSSHRRKNGPSTLESSRFPARKRGNLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MNQVTDWVDPSFDDFLECSGVSTITATSLGVNNSSHRRKNGPSTLESSRFPARKRGNLSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LEQIYGLENSKEYLSENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LEQIYGLENSKEYLSENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ILLITGPPGCGKTTTLKILSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 ILLITGPPGCGKTTTLKILSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD QIAVFKEFLLRATKYNKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 QIAVFKEFLLRATKYNKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD CPLIFIISDSLSGDNNQRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 CPLIFIISDSLSGDNNQRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD GKITVPDKTSLELLCQGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSLKSDAVLSKSKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 GKITVPDKTSLELLCQGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSLKSDAVLSKSKR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RKKPDRVFENQEVQAIGGKDVSLFLFRALGKILYCKRASLTELDSPRLPSHLSEYERDTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 RKKPDRVFENQEVQAIGGKDVSLFLFRALGKILYCKRASLTELDSPRLPSHLSEYERDTL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LVEPEEVVEMSHMPGDLFNLYLHQNYIDFFMEIDDIVRASEFLSFADILSGDWNTRSLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LVEPEEVVEMSHMPGDLFNLYLHQNYIDFFMEIDDIVRASEFLSFADILSGDWNTRSLLR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD EYSTSIATRGVMHSNKARGYAHCQGGGSSFRPLHKPQWFLINKKYRENCLAAKALFPDFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 EYSTSIATRGVMHSNKARGYAHCQGGGSSFRPLHKPQWFLINKKYRENCLAAKALFPDFC
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD LPALCLQTQLLPYLALLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEALTDREHGMIDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LPALCLQTQLLPYLALLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEALTDREHGMIDP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD DSGDEAQLNGGHSAEESLGEPTQATVPETWSLPLSQNSASELPASQPQPFSAQGDMEENI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 DSGDEAQLNGGHSAEESLGEPTQATVPETWSLPLSQNSASELPASQPQPFSAQGDMEENI
              610       620       630       640       650       660

              670
pF1KSD IIEDYESDGT
       ::::::::::
CCDS40 IIEDYESDGT
              670

>>CCDS4003.1 RAD17 gene_id:5884|Hs108|chr5                (681 aa)
 initn: 4452 init1: 4452 opt: 4452  Z-score: 4887.9  bits: 914.8 E(32554):    0
Smith-Waterman score: 4452; 99.9% identity (100.0% similar) in 668 aa overlap (3-670:14-681)

                          10        20        30        40         
pF1KSD            MNQVTDWVDPSFDDFLECSGVSTITATSLGVNNSSHRRKNGPSTLESSR
                    .::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MSKTFLRPKVSSTKVTDWVDPSFDDFLECSGVSTITATSLGVNNSSHRRKNGPSTLESSR
               10        20        30        40        50        60

      50        60        70        80        90       100         
pF1KSD FPARKRGNLSSLEQIYGLENSKEYLSENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 FPARKRGNLSSLEQIYGLENSKEYLSENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQ
               70        80        90       100       110       120

     110       120       130       140       150       160         
pF1KSD VLERQPKQGGSILLITGPPGCGKTTTLKILSKEHGIQVQEWINPVLPDFQKDDFKGMFNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 VLERQPKQGGSILLITGPPGCGKTTTLKILSKEHGIQVQEWINPVLPDFQKDDFKGMFNT
              130       140       150       160       170       180

     170       180       190       200       210       220         
pF1KSD ESSFHMFPYQSQIAVFKEFLLRATKYNKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 ESSFHMFPYQSQIAVFKEFLLRATKYNKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLH
              190       200       210       220       230       240

     230       240       250       260       270       280         
pF1KSD EVLRKYVRIGRCPLIFIISDSLSGDNNQRLLFPKEIQEECSISNISFNPVAPTIMMKFLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 EVLRKYVRIGRCPLIFIISDSLSGDNNQRLLFPKEIQEECSISNISFNPVAPTIMMKFLN
              250       260       270       280       290       300

     290       300       310       320       330       340         
pF1KSD RIVTIEANKNGGKITVPDKTSLELLCQGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 RIVTIEANKNGGKITVPDKTSLELLCQGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSL
              310       320       330       340       350       360

     350       360       370       380       390       400         
pF1KSD KSDAVLSKSKRRKKPDRVFENQEVQAIGGKDVSLFLFRALGKILYCKRASLTELDSPRLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 KSDAVLSKSKRRKKPDRVFENQEVQAIGGKDVSLFLFRALGKILYCKRASLTELDSPRLP
              370       380       390       400       410       420

     410       420       430       440       450       460         
pF1KSD SHLSEYERDTLLVEPEEVVEMSHMPGDLFNLYLHQNYIDFFMEIDDIVRASEFLSFADIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 SHLSEYERDTLLVEPEEVVEMSHMPGDLFNLYLHQNYIDFFMEIDDIVRASEFLSFADIL
              430       440       450       460       470       480

     470       480       490       500       510       520         
pF1KSD SGDWNTRSLLREYSTSIATRGVMHSNKARGYAHCQGGGSSFRPLHKPQWFLINKKYRENC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 SGDWNTRSLLREYSTSIATRGVMHSNKARGYAHCQGGGSSFRPLHKPQWFLINKKYRENC
              490       500       510       520       530       540

     530       540       550       560       570       580         
pF1KSD LAAKALFPDFCLPALCLQTQLLPYLALLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LAAKALFPDFCLPALCLQTQLLPYLALLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEA
              550       560       570       580       590       600

     590       600       610       620       630       640         
pF1KSD LTDREHGMIDPDSGDEAQLNGGHSAEESLGEPTQATVPETWSLPLSQNSASELPASQPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LTDREHGMIDPDSGDEAQLNGGHSAEESLGEPTQATVPETWSLPLSQNSASELPASQPQP
              610       620       630       640       650       660

     650       660       670
pF1KSD FSAQGDMEENIIIEDYESDGT
       :::::::::::::::::::::
CCDS40 FSAQGDMEENIIIEDYESDGT
              670       680 

>>CCDS4005.1 RAD17 gene_id:5884|Hs108|chr5                (584 aa)
 initn: 3882 init1: 3882 opt: 3882  Z-score: 4263.0  bits: 799.0 E(32554):    0
Smith-Waterman score: 3882; 100.0% identity (100.0% similar) in 582 aa overlap (89-670:3-584)

       60        70        80        90       100       110        
pF1KSD SSLEQIYGLENSKEYLSENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQG
                                     ::::::::::::::::::::::::::::::
CCDS40                             MNQHELAVHKKKIEEVETWLKAQVLERQPKQG
                                           10        20        30  

      120       130       140       150       160       170        
pF1KSD GSILLITGPPGCGKTTTLKILSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 GSILLITGPPGCGKTTTLKILSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPY
             40        50        60        70        80        90  

      180       190       200       210       220       230        
pF1KSD QSQIAVFKEFLLRATKYNKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 QSQIAVFKEFLLRATKYNKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRI
            100       110       120       130       140       150  

      240       250       260       270       280       290        
pF1KSD GRCPLIFIISDSLSGDNNQRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 GRCPLIFIISDSLSGDNNQRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANK
            160       170       180       190       200       210  

      300       310       320       330       340       350        
pF1KSD NGGKITVPDKTSLELLCQGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSLKSDAVLSKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 NGGKITVPDKTSLELLCQGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSLKSDAVLSKS
            220       230       240       250       260       270  

      360       370       380       390       400       410        
pF1KSD KRRKKPDRVFENQEVQAIGGKDVSLFLFRALGKILYCKRASLTELDSPRLPSHLSEYERD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 KRRKKPDRVFENQEVQAIGGKDVSLFLFRALGKILYCKRASLTELDSPRLPSHLSEYERD
            280       290       300       310       320       330  

      420       430       440       450       460       470        
pF1KSD TLLVEPEEVVEMSHMPGDLFNLYLHQNYIDFFMEIDDIVRASEFLSFADILSGDWNTRSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 TLLVEPEEVVEMSHMPGDLFNLYLHQNYIDFFMEIDDIVRASEFLSFADILSGDWNTRSL
            340       350       360       370       380       390  

      480       490       500       510       520       530        
pF1KSD LREYSTSIATRGVMHSNKARGYAHCQGGGSSFRPLHKPQWFLINKKYRENCLAAKALFPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LREYSTSIATRGVMHSNKARGYAHCQGGGSSFRPLHKPQWFLINKKYRENCLAAKALFPD
            400       410       420       430       440       450  

      540       550       560       570       580       590        
pF1KSD FCLPALCLQTQLLPYLALLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEALTDREHGMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 FCLPALCLQTQLLPYLALLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEALTDREHGMI
            460       470       480       490       500       510  

      600       610       620       630       640       650        
pF1KSD DPDSGDEAQLNGGHSAEESLGEPTQATVPETWSLPLSQNSASELPASQPQPFSAQGDMEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 DPDSGDEAQLNGGHSAEESLGEPTQATVPETWSLPLSQNSASELPASQPQPFSAQGDMEE
            520       530       540       550       560       570  

      660       670
pF1KSD NIIIEDYESDGT
       ::::::::::::
CCDS40 NIIIEDYESDGT
            580    

>>CCDS47226.1 RAD17 gene_id:5884|Hs108|chr5               (505 aa)
 initn: 3358 init1: 3358 opt: 3358  Z-score: 3688.6  bits: 692.5 E(32554): 3.9e-199
Smith-Waterman score: 3358; 100.0% identity (100.0% similar) in 505 aa overlap (166-670:1-505)

         140       150       160       170       180       190     
pF1KSD LKILSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKY
                                     ::::::::::::::::::::::::::::::
CCDS47                               MFNTESSFHMFPYQSQIAVFKEFLLRATKY
                                             10        20        30

         200       210       220       230       240       250     
pF1KSD NKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDN
               40        50        60        70        80        90

         260       270       280       290       300       310     
pF1KSD NQRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NQRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLC
              100       110       120       130       140       150

         320       330       340       350       360       370     
pF1KSD QGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSLKSDAVLSKSKRRKKPDRVFENQEVQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSLKSDAVLSKSKRRKKPDRVFENQEVQA
              160       170       180       190       200       210

         380       390       400       410       420       430     
pF1KSD IGGKDVSLFLFRALGKILYCKRASLTELDSPRLPSHLSEYERDTLLVEPEEVVEMSHMPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 IGGKDVSLFLFRALGKILYCKRASLTELDSPRLPSHLSEYERDTLLVEPEEVVEMSHMPG
              220       230       240       250       260       270

         440       450       460       470       480       490     
pF1KSD DLFNLYLHQNYIDFFMEIDDIVRASEFLSFADILSGDWNTRSLLREYSTSIATRGVMHSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DLFNLYLHQNYIDFFMEIDDIVRASEFLSFADILSGDWNTRSLLREYSTSIATRGVMHSN
              280       290       300       310       320       330

         500       510       520       530       540       550     
pF1KSD KARGYAHCQGGGSSFRPLHKPQWFLINKKYRENCLAAKALFPDFCLPALCLQTQLLPYLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KARGYAHCQGGGSSFRPLHKPQWFLINKKYRENCLAAKALFPDFCLPALCLQTQLLPYLA
              340       350       360       370       380       390

         560       570       580       590       600       610     
pF1KSD LLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEALTDREHGMIDPDSGDEAQLNGGHSAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEALTDREHGMIDPDSGDEAQLNGGHSAE
              400       410       420       430       440       450

         620       630       640       650       660       670
pF1KSD ESLGEPTQATVPETWSLPLSQNSASELPASQPQPFSAQGDMEENIIIEDYESDGT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ESLGEPTQATVPETWSLPLSQNSASELPASQPQPFSAQGDMEENIIIEDYESDGT
              460       470       480       490       500     




670 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:27:40 2016 done: Thu Nov  3 08:27:41 2016
 Total Scan time:  3.850 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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