Result of FASTA (ccds) for pF1KSDB0058
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDB0058, 1101 aa
  1>>>pF1KSDB0058 1101 - 1101 aa - 1101 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3745+/-0.00111; mu= 16.4280+/- 0.066
 mean_var=82.1846+/-16.374, 0's: 0 Z-trim(103.6): 25  B-trim: 3 in 1/49
 Lambda= 0.141475
 statistics sampled from 7464 (7467) to 7464 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.229), width:  16
 Scan time:  4.690

The best scores are:                                      opt bits E(32554)
CCDS11412.1 ACLY gene_id:47|Hs108|chr17            (1101) 7328 1506.4       0
CCDS11413.1 ACLY gene_id:47|Hs108|chr17            (1091) 4132 854.1       0
CCDS1967.2 SUCLG1 gene_id:8802|Hs108|chr2          ( 346)  302 72.2 2.3e-12


>>CCDS11412.1 ACLY gene_id:47|Hs108|chr17                 (1101 aa)
 initn: 7328 init1: 7328 opt: 7328  Z-score: 8077.4  bits: 1506.4 E(32554):    0
Smith-Waterman score: 7328; 100.0% identity (100.0% similar) in 1101 aa overlap (1-1101:1-1101)

               10        20        30        40        50        60
pF1KSD MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD HRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD SPRSLQGKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SPRSLQGKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD FYWGHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FYWGHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD IPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD SRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD GTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALK
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD EAGVFVPRSFDELGEIIQSVYEDLVANGVIVPAQEVPPPTVPMDYSWARELGLIRKPASF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EAGVFVPRSFDELGEIIQSVYEDLVANGVIVPAQEVPPPTVPMDYSWARELGLIRKPASF
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD MTSICDERGQELIYAGMPITEVFKEEMGIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MTSICDERGQELIYAGMPITEVFKEEMGIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADH
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD GPAVSGAHNTIICARAGKDLVSSLTSGLLTIGDRFGGALDAAAKMFSKAFDSGIIPMEFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GPAVSGAHNTIICARAGKDLVSSLTSGLLTIGDRFGGALDAAAKMFSKAFDSGIIPMEFV
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD NKMKKEGKLIMGIGHRVKSINNPDMRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NKMKKEGKLIMGIGHRVKSINNPDMRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPN
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD LILNVDGLIGVAFVDMLRNCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LILNVDGLIGVAFVDMLRNCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLK
             1030      1040      1050      1060      1070      1080

             1090      1100 
pF1KSD QGLYRHPWDDISYVLPEHMSM
       :::::::::::::::::::::
CCDS11 QGLYRHPWDDISYVLPEHMSM
             1090      1100 

>>CCDS11413.1 ACLY gene_id:47|Hs108|chr17                 (1091 aa)
 initn: 4118 init1: 4118 opt: 4132  Z-score: 4552.1  bits: 854.1 E(32554):    0
Smith-Waterman score: 7231; 99.1% identity (99.1% similar) in 1101 aa overlap (1-1101:1-1091)

               10        20        30        40        50        60
pF1KSD MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMALG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD HRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
CCDS11 HRPIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQ----
              430       440       450       460       470          

              490       500       510       520       530       540
pF1KSD SPRSLQGKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQK
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ------GKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQK
              480       490       500       510       520       530

              550       560       570       580       590       600
pF1KSD FYWGHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FYWGHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEG
              540       550       560       570       580       590

              610       620       630       640       650       660
pF1KSD IPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYV
              600       610       620       630       640       650

              670       680       690       700       710       720
pF1KSD SRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIG
              660       670       680       690       700       710

              730       740       750       760       770       780
pF1KSD GTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALK
              720       730       740       750       760       770

              790       800       810       820       830       840
pF1KSD EAGVFVPRSFDELGEIIQSVYEDLVANGVIVPAQEVPPPTVPMDYSWARELGLIRKPASF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EAGVFVPRSFDELGEIIQSVYEDLVANGVIVPAQEVPPPTVPMDYSWARELGLIRKPASF
              780       790       800       810       820       830

              850       860       870       880       890       900
pF1KSD MTSICDERGQELIYAGMPITEVFKEEMGIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MTSICDERGQELIYAGMPITEVFKEEMGIGGVLGLLWFQKRLPKYSCQFIEMCLMVTADH
              840       850       860       870       880       890

              910       920       930       940       950       960
pF1KSD GPAVSGAHNTIICARAGKDLVSSLTSGLLTIGDRFGGALDAAAKMFSKAFDSGIIPMEFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GPAVSGAHNTIICARAGKDLVSSLTSGLLTIGDRFGGALDAAAKMFSKAFDSGIIPMEFV
              900       910       920       930       940       950

              970       980       990      1000      1010      1020
pF1KSD NKMKKEGKLIMGIGHRVKSINNPDMRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NKMKKEGKLIMGIGHRVKSINNPDMRVQILKDYVRQHFPATPLLDYALEVEKITTSKKPN
              960       970       980       990      1000      1010

             1030      1040      1050      1060      1070      1080
pF1KSD LILNVDGLIGVAFVDMLRNCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LILNVDGLIGVAFVDMLRNCGSFTREEADEYIDIGALNGIFVLGRSMGFIGHYLDQKRLK
             1020      1030      1040      1050      1060      1070

             1090      1100 
pF1KSD QGLYRHPWDDISYVLPEHMSM
       :::::::::::::::::::::
CCDS11 QGLYRHPWDDISYVLPEHMSM
             1080      1090 

>>CCDS1967.2 SUCLG1 gene_id:8802|Hs108|chr2               (346 aa)
 initn: 245 init1: 164 opt: 302  Z-score: 335.4  bits: 72.2 E(32554): 2.3e-12
Smith-Waterman score: 315; 26.1% identity (54.1% similar) in 333 aa overlap (474-802:33-341)

           450       460       470       480       490       500   
pF1KSD STSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVPSPRSLQGKSTTLFSRHTKAIVWG
                                     .::...       ...    ...:: :  :
CCDS19 ATLAAAADIATMVSGSSGLAAARLLSRSFLLPQNGIRHCSYTASRQHLYVDKNTKIICQG
             10        20        30        40        50        60  

           510       520       530       540       550       560   
pF1KSD MQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKH
       .  .  :: .  . .       :.. . :  :        :. .. .:::... .: ...
CCDS19 FTGK--QGTFHSQQALEYGTKLVGGTT-PGKG--------GQTHLGLPVFNTVKEA-KEQ
               70        80         90               100        110

           570       580       590       600        610       620  
pF1KSD PEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEA-LTRKLIKKADQKGVTIIG
         . . . ..    :  .  :... :.:  .. :.::::.  ..:   :   :. . .::
CCDS19 TGATASVIYVPPPFAAAAINEAIE-AEIPLVVCITEGIPQQDMVRVKHKLLRQEKTRLIG
              120       130        140       150       160         

            630       640       650       660       670       680  
pF1KSD PATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVY
       :   : :.::  :::        :. ..... : .. ::::: .. :  .  ...  :  
CCDS19 PNCPGVINPGECKIG--------IMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQS
     170       180               190       200       210       220 

            690       700       710       720       730            
pF1KSD EGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKE---GRLTKP
         :.:::: . :. :.: .  . .  ... :...:::::. : .  . .:.   :  .::
CCDS19 LCVGIGGDPFNGTDFIDCLEIFLNDSATEGIILIGEIGGNAEENAAEFLKQHNSGPNSKP
             230       240       250       260       270       280 

     740       750       760       770       780       790         
pF1KSD IVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQS
       .: .  :  :       ..:::::    ..  :  : .::. ::: :  :  .::  : .
CCDS19 VVSFIAGLTAP---PGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYK
             290          300       310       320       330        

     800       810       820       830       840       850         
pF1KSD VYEDLVANGVIVPAQEVPPPTVPMDYSWARELGLIRKPASFMTSICDERGQELIYAGMPI
        .:                                                         
CCDS19 EFEKRKML                                                    
      340                                                          




1101 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:24:00 2016 done: Thu Nov  3 08:24:01 2016
 Total Scan time:  4.690 Total Display time:  0.130

Function used was FASTA [36.3.4 Apr, 2011]
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