Result of FASTA (ccds) for pF1KSDB0004
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDB0004, 1086 aa
  1>>>pF1KSDB0004 1086 - 1086 aa - 1086 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.2761+/-0.000996; mu= -3.5509+/- 0.060
 mean_var=353.4685+/-70.044, 0's: 0 Z-trim(115.7): 27  B-trim: 0 in 0/53
 Lambda= 0.068218
 statistics sampled from 16228 (16252) to 16228 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.499), width:  16
 Scan time:  5.780

The best scores are:                                      opt bits E(32554)
CCDS10410.1 CAPN15 gene_id:6650|Hs108|chr16        (1086) 7635 766.0       0
CCDS47436.1 CAPN11 gene_id:11131|Hs108|chr6        ( 739)  560 69.6   3e-11


>>CCDS10410.1 CAPN15 gene_id:6650|Hs108|chr16             (1086 aa)
 initn: 7635 init1: 7635 opt: 7635  Z-score: 4076.4  bits: 766.0 E(32554):    0
Smith-Waterman score: 7635; 100.0% identity (100.0% similar) in 1086 aa overlap (1-1086:1-1086)

               10        20        30        40        50        60
pF1KSD MATVGEWSCVRCTFLNPAGQRQCSICEAPRHKPDLNHILRLSVEEQKWPCARCTFRNFLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MATVGEWSCVRCTFLNPAGQRQCSICEAPRHKPDLNHILRLSVEEQKWPCARCTFRNFLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KEACEVCGFTPEPAPGAAFLPVLNGVLPKPPAILGEPKGSCQEEAGPVRTAGLVATEPAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KEACEVCGFTPEPAPGAAFLPVLNGVLPKPPAILGEPKGSCQEEAGPVRTAGLVATEPAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GQCEDKDEEEKEEQEEEEGAAEPRGGWACPRCTLHNTPVASSCSVCGGPRRLSLPRIPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GQCEDKDEEEKEEQEEEEGAAEPRGGWACPRCTLHNTPVASSCSVCGGPRRLSLPRIPPE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD ALVVPEVVAPAGFHVVPAAPPPGLPGEGAEANPPATSQGPAAEPEPPRVPPFSPFSSTLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ALVVPEVVAPAGFHVVPAAPPPGLPGEGAEANPPATSQGPAAEPEPPRVPPFSPFSSTLQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD NNPVPRSRREVPPQLQPPVPEAAQPSPSAGCRGAPQGSGWAGASRLAELLSGKRLSVLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NNPVPRSRREVPPQLQPPVPEAAQPSPSAGCRGAPQGSGWAGASRLAELLSGKRLSVLEE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD EATEGGTSRVEAGSSTSGSDIIDLAGDTVRYTPASPSSPDFTTWSCAKCTLRNPTVAPRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EATEGGTSRVEAGSSTSGSDIIDLAGDTVRYTPASPSSPDFTTWSCAKCTLRNPTVAPRC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SACGCSKLHGFQEHGEPPTHCPDCGADKPSPCGRSCGRVSSAQKAARVLPERPGQWACPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SACGCSKLHGFQEHGEPPTHCPDCGADKPSPCGRSCGRVSSAQKAARVLPERPGQWACPA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD CTLLNALRAKHCAACHTPQLLVAQRRGAAPLRRRESMHVEQRRQTDEGEAKALWENIVAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CTLLNALRAKHCAACHTPQLLVAQRRGAAPLRRRESMHVEQRRQTDEGEAKALWENIVAF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD CRENNVSFVDDSFPPGPESVGFPAGDSVQQRVRQWLRPQEINCSVFRDHRATWSVFHTLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CRENNVSFVDDSFPPGPESVGFPAGDSVQQRVRQWLRPQEINCSVFRDHRATWSVFHTLR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD PSDILQGLLGNCWFLSALAVLAERPDLVERVMVTRSLCAEGAYQVRLCKDGTWTTVLVDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PSDILQGLLGNCWFLSALAVLAERPDLVERVMVTRSLCAEGAYQVRLCKDGTWTTVLVDD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD MLPCDEAGCLLFSQAQRKQLWVALIEKALAKLHGSYFALQAGRAIEGLATLTGAPCESLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLPCDEAGCLLFSQAQRKQLWVALIEKALAKLHGSYFALQAGRAIEGLATLTGAPCESLA
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD LQLSSTNPREEPVDTDLIWAKMLSSKEAGFLMGASCGGGNMKVDDSAYESLGLRPRHAYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LQLSSTNPREEPVDTDLIWAKMLSSKEAGFLMGASCGGGNMKVDDSAYESLGLRPRHAYS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD ILDVRDVQGTRLLRLRNPWGRFSWNGSWSDEWPHWPGHLRGELMPHGSSEGVFWMEYGDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ILDVRDVQGTRLLRLRNPWGRFSWNGSWSDEWPHWPGHLRGELMPHGSSEGVFWMEYGDF
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD VRYFDSVDICKVHSDWQEARVQGCFPSSASAPVGVTALTVLERASLEFALFQEGSRRSDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VRYFDSVDICKVHSDWQEARVQGCFPSSASAPVGVTALTVLERASLEFALFQEGSRRSDA
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD VDSHLLDLCILVFRATFGSGGHLSLGRLLAHSKRAVKKFVSCDVMLEPGEYAVVCCAFNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VDSHLLDLCILVFRATFGSGGHLSLGRLLAHSKRAVKKFVSCDVMLEPGEYAVVCCAFNH
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD WGPPLPGTPAPQASSPSAGVPRASPEPPGHVLAVYSSRLVMVEPVEAQPTTLADAIILLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WGPPLPGTPAPQASSPSAGVPRASPEPPGHVLAVYSSRLVMVEPVEAQPTTLADAIILLT
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD ESRGERHEGREGMTCYYLTHGWAGLIVVVENRHPKAYLHVQCDCTDSFNVVSTRGSLRTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ESRGERHEGREGMTCYYLTHGWAGLIVVVENRHPKAYLHVQCDCTDSFNVVSTRGSLRTQ
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD DSVPPLHRQVLVILSQLEGNAGFSITHRLAHRKAAQAFLSDWTASKGTHSPPLTPEVAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DSVPPLHRQVLVILSQLEGNAGFSITHRLAHRKAAQAFLSDWTASKGTHSPPLTPEVAGL
             1030      1040      1050      1060      1070      1080

             
pF1KSD HGPRPL
       ::::::
CCDS10 HGPRPL
             

>>CCDS47436.1 CAPN11 gene_id:11131|Hs108|chr6             (739 aa)
 initn: 549 init1: 206 opt: 560  Z-score: 315.5  bits: 69.6 E(32554): 3e-11
Smith-Waterman score: 586; 35.1% identity (59.6% similar) in 342 aa overlap (474-795:66-380)

           450       460       470       480       490       500   
pF1KSD QRRGAAPLRRRESMHVEQRRQTDEGEAKALWENIVAFCRENNVSFVDDSFPPGPESVGF-
                                     .:.. : : ...  : :  ::  : :.:: 
CCDS47 TGMVAHINNSRLKAKGVGQHDNAQNFGNQSFEELRAACLRKGELFEDPLFPAEPSSLGFK
          40        50        60        70        80        90     

               510       520        530       540       550        
pF1KSD ---PAGDSVQQRVRQWLRPQEI-NCSVFRDHRATWSVFHTLRPSDILQGLLGNCWFLSAL
          : . .::.   .: ::..: :  .:        ..  . :.:: ::.::.::.:.:.
CCDS47 DLGPNSKNVQNI--SWQRPKDIINNPLF--------IMDGISPTDICQGILGDCWLLAAI
         100         110       120               130       140     

      560       570       580           590       600       610    
pF1KSD AVLAERPDLVERVMVTRSLCAE----GAYQVRLCKDGTWTTVLVDDMLPCDEAGCLLFSQ
       . :.  : :. :: : :.   .    : .. .. . : :..:.::: ::  .   ..  .
CCDS47 GSLTTCPKLLYRV-VPRGQSFKKNYAGIFHFQIWQFGQWVNVVVDDRLPTKNDKLVFVHS
         150        160       170       180       190       200    

          620       630       640       650       660       670    
pF1KSD AQRKQLWVALIEKALAKLHGSYFALQAGRAIEGLATLTGAPCESLALQLSSTNPREEPVD
       ..:...: ::.::: ::: ::: ::..: ..:::  .::.  .:. ::       . : .
CCDS47 TERSEFWSALLEKAYAKLSGSYEALSGGSTMEGLEDFTGGVAQSFQLQ-------RPPQN
          210       220       230       240       250              

          680       690       700        710          720          
pF1KSD TDLIWAKMLSSKEAGFLMGASCGGGNMKV-DDSAYESLG---LRPRHAYSILDVRDVQ--
          .  : .   : . ::: :     ..: .::  ::.    :   ::::.  ..::.  
CCDS47 LLRLLRKAV---ERSSLMGCS-----IEVTSDSELESMTDKMLVRGHAYSVTGLQDVHYR
       260          270            280       290       300         

      730         740       750          760       770       780   
pF1KSD GT--RLLRLRNPWGRFSWNGSWSD---EWPHWPGHLRGELMPHGSSEGVFWMEYGDFVRY
       :    :.:.::::::. :::.:::   :: .  . .. .:. : . .: ::: : ::.  
CCDS47 GKMETLIRVRNPWGRIEWNGAWSDSAREWEEVASDIQMQLL-HKTEDGEFWMSYQDFLNN
     310       320       330       340       350        360        

           790       800       810       820       830       840   
pF1KSD FDSVDICKVHSDWQEARVQGCFPSSASAPVGVTALTVLERASLEFALFQEGSRRSDAVDS
       :  ..::..  :                                                
CCDS47 FTLLEICNLTPDTLSGDYKSYWHTTFYEGSWRRGSSAGGCRNHPGTFWTNPQFKISLPEG
      370       380       390       400       410       420        




1086 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:02:45 2016 done: Thu Nov  3 08:02:46 2016
 Total Scan time:  5.780 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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