Result of FASTA (ccds) for
pF1KSDA1971
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1971, 809 aa
1>>>pF1KSDA1971 809 - 809 aa - 809 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.6843+/-0.00111; mu= -10.9235+/- 0.067
mean_var=474.3961+/-97.086, 0's: 0 Z-trim(115.2): 16 B-trim: 0 in 0/55
Lambda= 0.058885
statistics sampled from 15781 (15791) to 15781 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.485), width: 16
Scan time: 4.650
The best scores are: opt bits E(32554)
CCDS45333.1 WHAMM gene_id:123720|Hs108|chr15 ( 809) 5492 481.5 2.5e-135
CCDS4047.3 JMY gene_id:133746|Hs108|chr5 ( 988) 1177 115.0 6.4e-25
>>CCDS45333.1 WHAMM gene_id:123720|Hs108|chr15 (809 aa)
initn: 5492 init1: 5492 opt: 5492 Z-score: 2543.2 bits: 481.5 E(32554): 2.5e-135
Smith-Waterman score: 5492; 100.0% identity (100.0% similar) in 809 aa overlap (1-809:1-809)
10 20 30 40 50 60
pF1KSD MEDEQPDSLEGWVPVREGLFAEPERHRLRFLVAWNGAEGKFAVTCHDRTAQQRRLREGAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MEDEQPDSLEGWVPVREGLFAEPERHRLRFLVAWNGAEGKFAVTCHDRTAQQRRLREGAR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LGPEPEPKPEAAVSPSSWAGLLSAAGLRGAHRQLAALWPPLERCFPRLPPELDVGGGGAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LGPEPEPKPEAAVSPSSWAGLLSAAGLRGAHRQLAALWPPLERCFPRLPPELDVGGGGAW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GLGLGLWALLWPTRAGPGEAALQELCGQLERYLGAAADGCGGATVRDALFPAEGGAADCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GLGLGLWALLWPTRAGPGEAALQELCGQLERYLGAAADGCGGATVRDALFPAEGGAADCE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD SPREFRERALRARWVEADARLRQVIQGHGKANTMVALMNVYQEEDEAYQELVTVATMFFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SPREFRERALRARWVEADARLRQVIQGHGKANTMVALMNVYQEEDEAYQELVTVATMFFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD YLLQPFRAMREVATLCKLDILKSLDEDDLGPRRVVALEKEAEEWTRRAEEAVVSIQDITV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YLLQPFRAMREVATLCKLDILKSLDEDDLGPRRVVALEKEAEEWTRRAEEAVVSIQDITV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD NYFKETVKALAGMQKEMEQDAKRFGQAAWATAIPRLEKLQLMLARETLQLMRAKELCLNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NYFKETVKALAGMQKEMEQDAKRFGQAAWATAIPRLEKLQLMLARETLQLMRAKELCLNH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD KRAEIQGKMEDLPEQEKNTNVVDELEIQFYEIQLELYEVKFEILKNEEILLTTQLDSLKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KRAEIQGKMEDLPEQEKNTNVVDELEIQFYEIQLELYEVKFEILKNEEILLTTQLDSLKR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LIKEKQDEVVYYDPCENPEELKVIDCVVGLQDDKNLEVKELRRQCQQLESKRGRICAKRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LIKEKQDEVVYYDPCENPEELKVIDCVVGLQDDKNLEVKELRRQCQQLESKRGRICAKRA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD SLRSRKDQCKENHRFRLQQAEESIRYSRQHHSIQMKRDKIKEEEQKKKEWINQERQKTLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SLRSRKDQCKENHRFRLQQAEESIRYSRQHHSIQMKRDKIKEEEQKKKEWINQERQKTLQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD RLRSFKDKRLAQSVRNTSGSEPVAPNLPSDLSQQMCLPASHAVSVIHPSSRKTRGVPLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RLRSFKDKRLAQSVRNTSGSEPVAPNLPSDLSQQMCLPASHAVSVIHPSSRKTRGVPLSE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD AGNVKSPKCQNCHGNIPVQVFVPVGDQTHSKSSEELSLPPPPPPPPPPPPPPPPPPPPLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AGNVKSPKCQNCHGNIPVQVFVPVGDQTHSKSSEELSLPPPPPPPPPPPPPPPPPPPPLR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD ALSSSSQAATHQNLGFRAPVKDDQPRPLVCESPAERPRDSLESFSCPGSMDEVLASLRHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ALSSSSQAATHQNLGFRAPVKDDQPRPLVCESPAERPRDSLESFSCPGSMDEVLASLRHG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD RAPLRKVEVPAVRPPHASINEHILAAIRQGVKLKKVHPDLGPNPSSKPTSNRRTSDLERS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RAPLRKVEVPAVRPPHASINEHILAAIRQGVKLKKVHPDLGPNPSSKPTSNRRTSDLERS
730 740 750 760 770 780
790 800
pF1KSD IKAALQRIKRVSADSEEDSDEQDPGQWDG
:::::::::::::::::::::::::::::
CCDS45 IKAALQRIKRVSADSEEDSDEQDPGQWDG
790 800
>>CCDS4047.3 JMY gene_id:133746|Hs108|chr5 (988 aa)
initn: 1674 init1: 1081 opt: 1177 Z-score: 560.9 bits: 115.0 E(32554): 6.4e-25
Smith-Waterman score: 1576; 37.3% identity (64.4% similar) in 786 aa overlap (63-804:214-982)
40 50 60 70 80 90
pF1KSD AWNGAEGKFAVTCHDRTAQQRRLREGARLGPEPEPKPEAAVSPSSWAGLLSAAGLRGAHR
: : . :. . :::::.: ::..:.
CCDS40 SASGTVSEEIEVLEMVKEDEAPLALSDAEQPPPATELESPAEECSWAGLFSFQDLRAVHQ
190 200 210 220 230 240
100 110 120 130 140 150
pF1KSD QLAALWPPLERCFPRLPPELDVGGGGAWGLGLGLWALLWPTRAGPGEAALQELCGQLERY
:: .. :: :.: .: : . :.:..:. : .. :: ::. :
CCDS40 QLCSVNSQLEPCLPVFPEEPS-----------GMWTVLFGGAPEMTEQEIDTLCYQLQVY
250 260 270 280 290
160 170 180 190 200 210
pF1KSD LGAAADGCGGATVRDALFPAEGGAADC-ESPREFRERALRARWVEADARLRQVIQGHGKA
:: . : :: . ..:: . :: :.:... . .: :...... : ..
CCDS40 LGHGLDTCGWKILSQVLFTETDDPEEYYESLSELRQKGYEEVLQRARKRIQELLDKHKNT
300 310 320 330 340 350
220 230 240 250 260 270
pF1KSD NTMVALMNVYQEEDEAYQELVTVATMFFQYLLQPFRAMREVATLCKLDILKSLDEDDLGP
..:: :...:: :::::. :. ..: ..:::::::: :::.: : . .: :...: :::
CCDS40 ESMVELLDLYQMEDEAYSSLAEATTELYQYLLQPFRDMRELAMLRRQQIKISMENDYLGP
360 370 380 390 400 410
280 290 300 310 320 330
pF1KSD RRVVALEKEAEEWTRRAEEAVVSIQDITVNYFKETVKALAGMQKEMEQDAKRFGQAAWAT
::. .:.:: .: :.:. ::.::::.::.::. :.:: .. .:. : :.::.:.::.
CCDS40 RRIESLQKEDADWQRKAHMAVLSIQDLTVKYFEITAKAQKAVYDRMRADQKKFGKASWAA
420 430 440 450 460 470
340 350 360 370 380 390
pF1KSD AIPRLEKLQLMLARETLQLMRAKELCLNHKRAEIQGKMEDLPEQEKNTNVVDELEIQFYE
: :.:::: ...::::.:::::.::.... .. .:..: . .:.:: ..:.
CCDS40 AAERMEKLQYAVSKETLQMMRAKEICLEQRKHALKEEMQSLRGGTEAIARLDQLEADYYD
480 490 500 510 520 530
400 410 420 430 440 450
pF1KSD IQLELYEVKFEILKNEEILLTTQLDSLKRLIKEKQDEVVYYDPCENPEELKVIDCVVGLQ
.::.::::.::::: ::.:::.::.:.::::.::.::::::: :. : . . ...
CCDS40 LQLQLYEVQFEILKCEELLLTAQLESIKRLISEKRDEVVYYDTYESMEAMLEKEEMAASA
540 550 560 570 580 590
460 470 480 490 500 510
pF1KSD DDKNLEVKELRRQCQQLESKRGRICAKRASLRSRKDQCKENHRFRLQQAEESIRYSRQHH
. :...:... .:::..:::. ::.. ::..:. : .: ..:: . : ::
CCDS40 YLQREELQKLQQKARQLEARRGRVSAKKSYLRNKKEICIAKHNEKIQQRTRIEDEYRTHH
600 610 620 630 640 650
520 530 540 550
pF1KSD SIQMKRDKIKEEEQKKKEWINQERQKTLQRLRSFKDK------------RLAQSVRNTSG
..:.::.:...::..:. :..::::.::.:::.::.. :::.. :. ..
CCDS40 TVQLKREKLHDEEERKSAWVSQERQRTLDRLRTFKQRYPGQVILKSTRLRLAHARRKGAA
660 670 680 690 700 710
560 570 580 590 600
pF1KSD SEPV-----APNLPSDLSQQMCLPASHAVSVIHPSSRKTRG---VPLSEAG----NVKSP
: :: .::: :. . : . :. :. : : ... .. :
CCDS40 S-PVLQEDHCDSLPSVLQVEEKTEEVGEGRVKRGPSQTTEPQSLVQLEDTSLTQLEATSL
720 730 740 750 760 770
610 620 630 640 650 660
pF1KSD KCQNCHGNIPVQVFVPVGDQTHSKSS---EELSLPPPPPPPPPPPPPPPPPPPPLRALSS
.. ...: . .:. ... : . : : :: :::::::::::::::: . ..
CCDS40 PLSGVTSELPPTISLPLLNNNLEPCSVTINPLPSPLPPTPPPPPPPPPPPPPPPLPVAKD
780 790 800 810 820 830
670 680 690 700 710
pF1KSD SSQAATHQNLGF------RAPVKDDQPRPLVCESP---AERPR-----DSLESFSCPGSM
:. . ...: : : . . : . .: . : . ..:. . :
CCDS40 SGPETLEKDLPRKEGNEKRIPKSASAPSAHLFDSSQLVSARKKLRKTAEGLQRRRVSSPM
840 850 860 870 880 890
720 730 740 750 760
pF1KSD DEVLASLRHGRAPLRKVEVPAVRP-PHASINEHILAAIRQGVKLKKVHPD-LGPNPSSKP
:::::::..: :.::: .. : : . ...::: ::.:::::::. : : . . :
CCDS40 DEVLASLKRGSFHLKKVEQRTLPPFPDEDDSNNILAQIRKGVKLKKVQKDVLRESFTLLP
900 910 920 930 940 950
770 780 790 800
pF1KSD TSNRRTSDLERSIKAALQRIKRVSADSEEDSDEQDPGQWDG
:. : :::. ::.:::..: .:: : .: :
CCDS40 D----TDPLTRSIHEALRRIKEASPESE-DEEEALPCTDWEN
960 970 980
809 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 07:53:53 2016 done: Thu Nov 3 07:53:54 2016
Total Scan time: 4.650 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]