GENSCAN 1.0	Date run:  3-Nov-116	Time: 07:44:19

Sequence gi568815594r:24903454_25130639 : 227186 bp : 43.87% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 PlyA -   1396   1391    6                               1.05
 1.04 Term -   3396   3340   57  0  0  118   49    40 0.583   0.79
 1.03 Intr -   8686   8567  120  1  0   72  111     4 0.500   1.79
 1.02 Intr -   9585   9373  213  0  0   13   93   249 0.722  16.81
 1.01 Init -  15851  15654  198  2  0  103   94     5 0.175   1.54
 1.00 Prom -  18482  18443   40                              -2.96

 2.00 Prom +  24516  24555   40                              -2.26
 2.01 Sngl +  35985  37001 1017  2  0   77   43   433 0.899  34.74
 2.02 PlyA +  37229  37234    6                               1.05

 3.00 Prom +  37398  37437   40                              -6.36
 3.01 Sngl +  39173  39781  609  1  0   58   38   283 0.857  16.50
 3.02 PlyA +  39878  39883    6                               1.05

 4.00 Prom +  40625  40664   40                              -2.46
 4.01 Sngl +  57918  58253  336  2  0   86   55   181 0.609  10.63
 4.02 PlyA +  59428  59433    6                               1.05

 5.00 Prom +  62972  63011   40                              -5.76
 5.01 Init +  63482  64243  762  1  0   36  -18   342 0.183  13.10
 5.02 Intr +  64859  65044  186  1  0  -23   44   216 0.155   5.99
 5.03 Intr +  66124  66271  148  0  1  117   80   114 0.953  13.31
 5.04 Intr +  66766  66966  201  2  0   20   50   158 0.644   4.46
 5.05 Intr +  67613  67730  118  0  1   73   48    59 0.170  -0.08
 5.06 Term +  70713  70773   61  0  1   76   53    47 0.055  -2.72
 5.07 PlyA +  71721  71726    6                               1.05

 6.13 PlyA -  71741  71736    6                               1.05
 6.12 Term -  72249  72215   35  1  2  101   42    37 0.249  -1.85
 6.11 Intr -  72915  72840   76  0  1   92   11    86 0.270   0.39
 6.10 Intr -  75530  75351  180  2  0   50   81   112 0.709   6.76
 6.09 Intr -  76236  76153   84  0  0   92   66    54 0.798   3.62
 6.08 Intr -  85272  85099  174  0  0  108   81    19 0.228   3.34
 6.07 Intr - 100815 100118  698  1  2   32  -19   937 0.004  68.61
 6.06 Intr - 109046 108882  165  0  0   54   89   216 0.329  18.23
 6.05 Intr - 114705 114536  170  2  2   60   66   149 0.829   9.49
 6.04 Intr - 121438 121367   72  0  0   90   95    35 0.597   2.92
 6.03 Intr - 123486 123415   72  2  0   74   95    64 0.645   4.22
 6.02 Intr - 125125 125054   72  0  0   85   68    50 0.488   1.22
 6.01 Init - 127240 127044  197  1  2   93   76   355 0.985  31.20
 6.00 Prom - 163654 163615   40                              -5.36

 7.04 PlyA - 164863 164858    6                               1.05
 7.03 Term - 168290 168183  108  2  0   52   43   100 0.894   0.41
 7.02 Intr - 168720 168584  137  1  2   87   98    76 0.988   8.79
 7.01 Init - 171758 171734   25  2  1   92  106    15 0.614   2.44
 7.00 Prom - 191575 191536   40                              -6.36

 8.00 Prom + 197249 197288   40                              -0.86
 8.01 Init + 204104 204158   55  1  1   89  113    28 0.827   6.91
 8.02 Intr + 204498 204620  123  1  0   75   78    49 0.829   3.16
 8.03 Intr + 207640 207824  185  2  2   74   53    79 0.321   2.51
 8.04 Intr + 208390 208468   79  0  1   78   83    28 0.354   0.42
 8.05 Term + 211245 211315   71  1  2  105   49    45 0.342   0.40
 8.06 PlyA + 212008 212013    6                               1.05

 9.03 PlyA - 212278 212273    6                               1.05
 9.02 Term - 220772 220478  295  1  1  101   44   219 0.972  13.58
 9.01 Intr - 222331 222241   91  2  1   78  111    21 0.563   2.45

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 100815  99998  818  1  2   32   49   905 0.913  74.30


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594r:24903454_25130639|GENSCAN_predicted_peptide_1|195_aa
MAIYSKSLEDRGLCPGCHPHSLVQHIREAQERLIELMAQYVKGDPAKPLLRHLKIVFPVS
WKQMGLADVESTALAAARGGGAAARRRRALSGPRGARAAAATRRREEEEAAGVQEAGQRM
EEEAMNGDRTESDWQGLDPMLFALQFPLRVCRPAGRSCRPLQVRGNADFSLSPGGNQVSS
GPLAVCTTSMLLLDE

>gi568815594r:24903454_25130639|GENSCAN_predicted_CDS_1|588_bp
atggctatctactccaaaagccttgaggacagaggtctgtgtcctggttgtcatcctcac
agcctagttcagcatataagagaagctcaagaaaggcttattgagttaatggcccagtat
gttaaaggagaccctgctaagcctctcttacggcaccttaagattgtttttcctgtatcg
tggaaacaaatggggctagctgacgtggagtcaacagcgctggcggccgcgagaggcggc
ggcgcagcggctcggaggcgccgggccctctcggggccgcgcggggcccgggcggcggcg
gcgacgcgacgtcgcgaggaggaggaggcggcgggggtccaggaggccggccagcgcatg
gaggaggaggccatgaacggcgaccggactgagagcgactggcaggggctggatcctatg
ctgtttgctcttcagttccccctaagagtttgccggcctgccgggagaagctgccggcct
ctccaggtgagagggaatgcggatttctccctctcacctggaggcaaccaggtgtcctct
ggccctctggctgtctgcaccacatccatgctacttttggatgaatga

>gi568815594r:24903454_25130639|GENSCAN_predicted_peptide_2|338_aa
MRKKQSRKTGNSKNQSASPPPKERSSSPATEQSWMENDFDELREKGFRRSNYSELKEEVQ
TNGKEVKNVEKKIDEWITRITNAQKSLKDLMELKTTARELRDERTSLSNRCDQVEERVSA
MEDEMNETMREEKFREKRIKRNKQSLQEIWDYVKRPNLRLIGVPESDGENGTKLENTLQD
IIQENFPNPARQANIQIQEIQRMPQRYSSRRATPRHIIVRFTKVEMREKMLRAARKKGWV
THKRKPIRLTADLLAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDK
QMLRDFVTTRPALKELLKEALNMERNNWYQPLQKHAKL

>gi568815594r:24903454_25130639|GENSCAN_predicted_CDS_2|1017_bp
atgcggaaaaaacagagcagaaaaactggaaactctaaaaatcagagtgcctctcctcct
ccaaaggaacgcagctcctcaccagcaacggaacaaagctggatggagaatgactttgac
gagttgagagagaaaggcttcagaagatcaaactactctgagctaaaggaggaagttcaa
accaatggcaaagaagttaaaaacgttgaaaaaaaaatagacgaatggataactagaata
actaatgcacagaagtccttaaaggacctgatggaactgaaaaccacagcacgagaacta
cgcgacgaacgcacaagcctcagtaaccgatgcgatcaagtggaagaaagggtatcagcg
atggaagatgaaatgaatgaaacgatgcgtgaagagaagtttagagaaaaaagaataaaa
agaaacaaacaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacgtctc
attggcgtacctgaaagtgacggggagaatggaaccaagttggaaaacactttgcaggat
attatccaggagaacttccccaatccagcaaggcaggccaacattcaaattcaggaaata
cagagaatgccacaaagatactcctcgagaagagcaactccaagacacataattgtcaga
ttcaccaaagttgaaatgagggaaaaaatgttaagggcagccagaaagaaaggttgggtt
acccacaaaaggaagcccatcagactaacagctgatctcttggcagaaactctacaagcc
agaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaacccagaatt
tcatatccagccaaactaagcttcataagtgaaggagaaataaaatactttacagacaag
caaatgctgagagattttgtcaccaccaggcctgccctaaaagagctcctgaaggaagca
ctaaacatggaaaggaacaactggtaccagccactgcaaaaacatgccaaattgtaa

>gi568815594r:24903454_25130639|GENSCAN_predicted_peptide_3|202_aa
MIVYLENPIISAQNLLKLISNFSKGSGYKINVQKSKAFLYTNNRQTESQIMSELPFTIAS
KRIKCLGIQLTRDVRELFKENYKPLLNEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIY
RFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKSILSQKNKAGGITIPDFKLYYKATV
TKTAWYWYQEIKTDGTEQSPQK

>gi568815594r:24903454_25130639|GENSCAN_predicted_CDS_3|609_bp
atgattgtatatctagaaaaccccatcatctcagcccaaaatctccttaagctgataagc
aacttcagcaaaggctcaggatacaaaatcaatgtgcaaaaatcaaaagcattcttatac
accaataacagacaaacagagagccaaatcatgagtgaactcccattcacaattgcttca
aagagaataaaatgcctaggaatccaacttacaagggatgtgagggaactcttcaaggag
aactacaaaccactgctcaatgaaataaaagaggatacaaacaaatggaagaacattcca
tgctcatgggtaggaagaatcaatatcgtgaaaatggccatactgcccaaggtaatttat
agattcaatgccatccccatcaagctaccaatgactttcttcacagaattggaaaaaact
actttaaagttcatatggaaccaaaaaagagcccgcatcgccaagtcaatcctaagccaa
aagaacaaagctggaggcatcacgatacctgacttcaaactatactacaaggctacggta
accaaaacagcatggtactggtaccaagagataaagaccgatggaacagaacagagccct
cagaaataa

>gi568815594r:24903454_25130639|GENSCAN_predicted_peptide_4|111_aa
MAILPKVIYRFNAIPIKLPMTFFTELEKTTLNFIWTQKRAHIAKSILSQNNKAGGIMLPD
FKLHYKATVTKTTWYWYQNRDTDQWNRTEPSEIMLHIYNYLIFDKPDKNKK

>gi568815594r:24903454_25130639|GENSCAN_predicted_CDS_4|336_bp
atggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatg
actttcttcacagaattggaaaaaactactttaaacttcatatggacccaaaaaagagcc
cacattgccaagtcaatcctaagccaaaataacaaagctggaggcatcatgctacctgac
ttcaagctgcactacaaggctacagtaaccaaaacaacatggtactggtaccaaaacaga
gatacagaccaatggaacagaacagagccctcagaaataatgctgcatatctacaactat
ctgatctttgacaaacctgacaaaaacaagaaatga

>gi568815594r:24903454_25130639|GENSCAN_predicted_peptide_5|491_aa
MLVDTGADCSLIYGNPDKFLGKPAFIDSYGGRSVKVKPVSQHPDIGCLAACLYTVYVSPI
PKYILEVDILHGLALQAMAREFGLSACDGHMHHQPQVLPQPRWVTSTHQYHLLGGYTEIT
ETIKKLEEVQKMCGTHSTYNSLVWAVRKPDGTWQMTVDYQELNKVTPPSHAAVPSIMDLI
ANLMTELGQYHYVVDLANAFFSTDISPESQEQFTFMWDGQRWTSTVLLQGYVHSPTICHD
LVATDLVTWQCPEGACESVTGWAAVIVQTTYPIAGMDAFTGNKFPDWDIADIHFGKVGYL
LGAAEYAEYKSLSNRVGWSSKLDLVLLTLNERPQKGSQTPVEALLHQGTAPTQLQIHSKD
DLLRPAHTYTEMTGVSSCWICTTFPATAVDGWPRHIHSASADNCTWLETWTPVADAWNAM
QQILDKGHLKTQGTQCCTFIPDNWQNITAALQRVSWEIKVVKTLTDDPLQSWAEGDPQVP
AAFPTNQPSVV

>gi568815594r:24903454_25130639|GENSCAN_predicted_CDS_5|1476_bp
atgctggtggatactggtgcagattgcagcctcatttatgggaacccagataagtttctg
ggaaaacctgctttcattgacagttatggaggacggtcagtgaaagtgaaacctgtatct
cagcaccctgacatcggctgtttggctgcctgtttatatactgtgtatgtctctcccata
ccaaaatacattctggaggtggatattttgcatggcctggcattacaagccatggccagg
gaattcggactgagtgcatgtgacggacatatgcatcaccagcctcaggtcctgccacaa
ccacgatgggttacttccacccatcaataccatttgctgggtgggtatacagagataact
gagacaattaaaaagctggaggaggtgcagaaaatgtgtggcacccacagcacctacaat
tctctggtgtgggcagttagaaagcctgatggaacttggcagatgacggtggactatcag
gaactgaataaagtaacacccccttcgcatgcagctgtaccatcaatcatggatttgata
gccaatttgatgacagaactgggacagtaccactatgtagtggacttggccaacgcattt
ttctccacagacatcagtccagagagccaggaacagttcaccttcatgtgggatgggcaa
cgatggacttctacagtgttgctgcagggctatgtgcatagccccaccatatgtcatgat
ctagttgccacagacttagtcacctggcaatgtccagaaggggcttgtgagagtgtgaca
ggatgggctgcagtcattgtgcagacgacttacccaatagcaggaatggatgcattcacg
ggtaacaaattcccagactgggacattgcagacatccactttggcaaagtggggtaccta
cttggagcagcagagtacgctgagtacaagtcccttagcaacagagttggctggagttcc
aagctggacctggtgctcctaaccttgaacgaacggccacagaaaggcagccagacccca
gtggaggctttgttacaccagggcactgcccccactcagttgcagatacattccaaggat
gacctccttcgaccagcccacacctacactgagatgaccggtgtttccagctgttggatc
tgcaccacctttccagcaacagctgtggatggctggcctcggcacatacattcagcatct
gcagacaactgcacatggctggagacttggacacctgtggctgatgcctggaacgcaatg
cagcaaattttggacaaaggacacctcaagacccaaggaacacaatgttgtacctttatc
cctgacaattggcagaatataacagcagccctgcaaagggtctcatgggagattaaggtg
gtcaagacccttactgacgaccccctacagagttgggcggaaggtgacccgcaggtgccg
gctgctttccccaccaatcagccatctgtggtttga

>gi568815594r:24903454_25130639|GENSCAN_predicted_peptide_6|664_aa
MALRRGGCGALGLLLLLLGAACLIPRSAQVRRLARCPATCSCTKESIICVGSSWVPRIVP
GDISSLSLVNGTFSEIKDRMFSHLPSLQLLLLNSNSFTIIRDDAFAGLFHLEYLFIEGNK
IETISRNAFRGLRDLTHLDLRGNKFECDCKAKWLYLWLKMTNSTVSDVLCIGPPEYQEKK
LNDVTSFDYECTTTDFVVHQTLPYQSVSVDTFNSKNDVYVAIAQPSMENCMVLEWDHIEM
NFRSYDNITGQSIVGCKAILIDDQVFVVVAQLFGGSHIYKYDESWTKFVKFQDIEVSRIS
KPNDIELFQIDDETFFVIADSSKAGLSTVYKWNSKGFYSYQSLHEWFRDTDAEFVDIDGK
SHLILSSRSQVPIILQWNKSSKKFVPHGDIPNMEDVLAVKSFRMQNTLYLSLTRFIGDSR
VMRWNSKQFVEIQALPSRGAMTLQPFSFKDNHYLALGSDYTFSQIYQWDKEKQLFKKFKE
IYEYCRSSLGASKCRYSPEKWLNAPVSGPTSQGAEIHTFSWLVMLMLSQVGTWKQPAGAK
EGNDDMTYPSALFPDFETTGNLLNCRNQGLLFGVTQGKNKVHRFQKGAMSVGQPATDVIL
LRNPKDTPRSEKPADFPSGYGAFYQRKPPFTLTQAWFQGHTVPKQGGYLQMASRVDTGLS
DSAQ

>gi568815594r:24903454_25130639|GENSCAN_predicted_CDS_6|1995_bp
atggcgctgcggagaggcggctgcggagcgctcgggctgctgctgctgctgctgggcgcc
gcgtgcctgataccgcggagcgcgcaggtgaggcggctggcgcgctgccccgccacttgc
agctgtaccaaggagtctatcatctgcgtgggctcttcctgggtgcccaggatcgtgccg
ggcgacatcagctccctgagcctggtaaatgggacgttttcagaaatcaaggaccgaatg
ttttcccatctgccttctctgcagctgctattgctgaattctaactcattcacgatcatc
cgggatgatgcttttgctggactttttcatcttgaatacctgttcattgaagggaacaaa
atagaaaccatttcaagaaatgcctttcgtggcctccgtgacctgactcacctagatttg
aggggtaataaatttgaatgtgactgcaaagccaagtggctatacctgtggttgaagatg
acaaattccaccgtttctgatgtgctgtgtattggtccaccagagtatcaggaaaagaag
ctaaatgacgtgaccagctttgactatgaatgcacaactacagattttgttgttcatcag
actttaccctaccagtcggtttcagtggatacgttcaactccaagaacgatgtgtacgtg
gccatcgcgcagcccagcatggagaactgcatggtgctggagtgggaccacattgaaatg
aatttccggagctatgacaacattacaggtcagtccatcgtgggctgtaaggccattctc
atcgatgatcaggtctttgtggtggtagcccagctcttcggtggctctcacatttacaaa
tacgacgagagttggaccaaatttgtcaaattccaagacatagaggtctctcgcatttcc
aagcccaatgacatcgagctgtttcagatcgacgacgagacgttctttgtcatcgcagac
agctcaaaggctggtctgtccacagtttataaatggaacagcaaaggattctattcttac
cagtcactgcacgagtggttcagggacacggatgcggagtttgttgatatcgatggaaaa
tcgcatctcatcctgtccagccgctcccaggtccccatcatcctccagtggaataaaagc
tctaagaagtttgtcccccatggtgacatccccaacatggaggacgtactggctgtgaag
agcttccgaatgcaaaataccctctacctttcccttacccgcttcatcggggactcccgg
gtcatgaggtggaacagtaagcagtttgtggagatccaagctcttccatcccggggggcc
atgaccctgcagcccttttcttttaaagataatcactacctggccctggggagtgactat
acattctctcagatataccagtgggataaagagaagcagctattcaaaaagtttaaggag
atttacgaatactgcaggtccagtctaggggcttctaagtgcaggtacagccctgagaag
tggctgaatgcccctgtttcagggcctacttcacaaggtgctgagatacacactttcagt
tggctagtcatgcttatgctttcccaggttggaacctggaaacagccagcaggtgcaaag
gaaggaaatgatgacatgacttacccatcagccctgtttcctgattttgaaaccacaggg
aatctgctcaattgtaggaaccagggtctccttttcggggtaactcagggtaagaacaaa
gtgcaccgcttccagaagggagccatgagtgttggacaaccagccacagatgtcatccta
ttgagaaatcctaaagacacgcccaggtcagagaagccagcagacttcccttctggatat
ggggcattttaccaaaggaaaccacccttcaccctgacacaggcctggttccagggccac
acagtgcccaagcaaggaggatacctgcagatggcctcaagggtggacacgggacttagt
gatagtgcacagtga

>gi568815594r:24903454_25130639|GENSCAN_predicted_peptide_7|89_aa
MAGWVGAETGDSLDRILNVSVPQFPHLHNGDSERAIGRLNWEMQVKTVHCTWYTSLSFWS
PEVTQGAWSLTKEMKLEEGLEEPEEKMAP

>gi568815594r:24903454_25130639|GENSCAN_predicted_CDS_7|270_bp
atggctggatgggttggagctgaaactggggacagcttggatcgaatacttaacgtctct
gtgcctcagtttcctcatctccacaatggggatagtgaaagggctattgggagactcaac
tgggagatgcaagtaaagactgtgcactgcacctggtacacaagtctgtccttctggagc
cctgaagtgacccaaggtgcctggagcctcaccaaggagatgaagttggaggaaggcctg
gaagagccagaagagaaaatggcaccctaa

>gi568815594r:24903454_25130639|GENSCAN_predicted_peptide_8|170_aa
MPGAESLSPAVVFSGLIQGFVLEPAELTIEWPEAAADIFLLSLKDPGAYPSPTPSAISRG
HKLSPCGHRQCESAVLWAGVKVPADEWETSGRRGRAEALLRLLGPKSPASSLAQGAKSSE
KMRKLRCREVDLPKDLTYREAPVTLWGGRSESPGKDGTAHQLDVVRGTGN

>gi568815594r:24903454_25130639|GENSCAN_predicted_CDS_8|513_bp
atgcccggggccgagagcctttcccctgctgttgtgttctcaggtctcatccaaggattt
gtcctggaaccagctgagcttactattgaatggcctgaggcagccgcagacatatttctg
ctgtcactcaaggatcctggagcgtatccaagcccaactcccagtgccatatctagagga
cacaagctgtcaccttgtggccaccgtcagtgcgagtcagcagtcctctgggcaggtgtg
aaggttccagctgatgaatgggaaacttcaggccggagagggagggcagaagccctactc
aggctcttgggtcccaagagccctgcatcctctttggctcaaggtgcaaaatcttctgag
aagatgaggaaactgaggtgtagagaggtagacttgcccaaggacctcacctacagggaa
gccccagtgaccctgtggggaggaaggtctgagtcaccaggcaaggacggaacagcacat
caactggatgtggtgagaggcactggaaactga

>gi568815594r:24903454_25130639|GENSCAN_predicted_peptide_9|128_aa
XMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAY
LNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLL
DTYQDASS

>gi568815594r:24903454_25130639|GENSCAN_predicted_CDS_9|387_bp
nctatgacacttaaaacactagatgaacaccgtgacaaagctgtcactcagcttggctcg
atgctttttaccagacaggtttctggagccagggttgtgcctcttgggtccatgcaaact
gtgagtggctatactttcagaggctttatgtcacatacaaataattacccttgtgcttac
ctcaatgctgcatcagccatcggaatgaagatgcaggatgtggacctgttcataaagaga
cttgacaggtgtttaaaggcagtaagaaaagaacgaagtaaagagagtgatgacaattat
gacaaaactgaagatgtggatattgaagaaatggctttaaaactagataatgtacttctt
gacacataccaggatgcttcttcatga