Result of FASTA (ccds) for pF1KSDA1899
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1899, 1024 aa
  1>>>pF1KSDA1899 1024 - 1024 aa - 1024 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3414+/-0.00118; mu= 16.0127+/- 0.071
 mean_var=84.5484+/-16.421, 0's: 0 Z-trim(102.3): 18  B-trim: 0 in 0/50
 Lambda= 0.139483
 statistics sampled from 6886 (6893) to 6886 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.565), E-opt: 0.2 (0.212), width:  16
 Scan time:  4.450

The best scores are:                                      opt bits E(32554)
CCDS73698.1 TUBGCP5 gene_id:114791|Hs108|chr15     (1024) 6828 1385.0       0
CCDS73697.1 TUBGCP5 gene_id:114791|Hs108|chr15     (1024) 6750 1369.3       0


>>CCDS73698.1 TUBGCP5 gene_id:114791|Hs108|chr15          (1024 aa)
 initn: 6828 init1: 6828 opt: 6828  Z-score: 7422.6  bits: 1385.0 E(32554):    0
Smith-Waterman score: 6828; 100.0% identity (100.0% similar) in 1024 aa overlap (1-1024:1-1024)

               10        20        30        40        50        60
pF1KSD MARHGPPWSRLDAQQERDVRELVRGVAGLQDEADPNFQLALNFAWSNFRFHRFLDVNSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MARHGPPWSRLDAQQERDVRELVRGVAGLQDEADPNFQLALNFAWSNFRFHRFLDVNSHK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD IEKTIEGIYEKFVIHSDLSKAASWKRLTEEFLNAPLPSIKEIKTDAHYSILSLLLCLSDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IEKTIEGIYEKFVIHSDLSKAASWKRLTEEFLNAPLPSIKEIKTDAHYSILSLLLCLSDS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD PSNSSYVETPRNKEVEKKDDFDWGKYLMEDEEMDIGPYMDTPNWSEESEEENDQQPLSRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PSNSSYVETPRNKEVEKKDDFDWGKYLMEDEEMDIGPYMDTPNWSEESEEENDQQPLSRE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DSGIQVDRTPLEEQDQNRKLDPCISWKDEPDDRSWLEHHVVHQYWTARPSQFPHSLHLHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DSGIQVDRTPLEEQDQNRKLDPCISWKDEPDDRSWLEHHVVHQYWTARPSQFPHSLHLHS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD NLAAVWDQHLYSSDPLYVPDDRVLVTETQVIRETLWLLSGVKKLFIFQLIDGKVTVRNNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NLAAVWDQHLYSSDPLYVPDDRVLVTETQVIRETLWLLSGVKKLFIFQLIDGKVTVRNNI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD IVTHLTHSCLRSVLEQIAAYGQVVFRLQEFIDEVMGHSSESMLPGSGSVPKKSTEAPFRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IVTHLTHSCLRSVLEQIAAYGQVVFRLQEFIDEVMGHSSESMLPGSGSVPKKSTEAPFRT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD YQAFMWALYKYFISFKEELAEIEKCIINNDTTITLAIVVDKLAPRLSQLKVLHKVFSTGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YQAFMWALYKYFISFKEELAEIEKCIINNDTTITLAIVVDKLAPRLSQLKVLHKVFSTGV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD AEVPPDTRNVVRASHLLNTLYKAILEYDNVGEASEQTVSLLFSLWVETVRPYLQTVDEWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AEVPPDTRNVVRASHLLNTLYKAILEYDNVGEASEQTVSLLFSLWVETVRPYLQTVDEWI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD VHGHLWDGAREFIIQRNKNVPVNHRDFWYATYTLYSVSEKTENEEKMSDNASASSGSDQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VHGHLWDGAREFIIQRNKNVPVNHRDFWYATYTLYSVSEKTENEEKMSDNASASSGSDQG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD PSSRQHTMVSFLKPVLKQIIMAGKSMQLLKNLQCAESTTCQAGARDAERKSLYTLFLESV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PSSRQHTMVSFLKPVLKQIIMAGKSMQLLKNLQCAESTTCQAGARDAERKSLYTLFLESV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD QSRLRHGEDSTPQVLTEQQATKENLMKMQSIAESHLELDDVHDPLLAINFARMYLEQSDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QSRLRHGEDSTPQVLTEQQATKENLMKMQSIAESHLELDDVHDPLLAINFARMYLEQSDF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD HEKFAGGDVCVDRSSESVTCQTFELTLRSCLYPHIDKQYLDCCGNLMQTLKKDYRLVEYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HEKFAGGDVCVDRSSESVTCQTFELTLRSCLYPHIDKQYLDCCGNLMQTLKKDYRLVEYL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD QAMRNFFLMEGGDTMYDFYTSIFDKIREKETWQNVSFLNVQLQEAVGQRYPEDSSRLSIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QAMRNFFLMEGGDTMYDFYTSIFDKIREKETWQNVSFLNVQLQEAVGQRYPEDSSRLSIS
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD FENVDTAKKKLPVHILDGLTLSYKVPWPVDIVISLECQKIYNQVFLLLLQIKWAKYSLDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FENVDTAKKKLPVHILDGLTLSYKVPWPVDIVISLECQKIYNQVFLLLLQIKWAKYSLDV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD LLFGELVSTAEKPRLKEGLIHEQDTVAQFGPQKEPVRQQIHRMFLLRVKLMHFVNSLHNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LLFGELVSTAEKPRLKEGLIHEQDTVAQFGPQKEPVRQQIHRMFLLRVKLMHFVNSLHNY
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD IMTRILHSTGLEFQHQVEEAKDLDQLIKIHYRYLSTIHDRCLLREKVSFVKEAIMKVLNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IMTRILHSTGLEFQHQVEEAKDLDQLIKIHYRYLSTIHDRCLLREKVSFVKEAIMKVLNL
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD ALMFADGWQAGLGTWRMESIEKMESDFKNCHMFLVTILNKAVCRGSFPHLESLALSLMAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ALMFADGWQAGLGTWRMESIEKMESDFKNCHMFLVTILNKAVCRGSFPHLESLALSLMAG
              970       980       990      1000      1010      1020

           
pF1KSD MEQS
       ::::
CCDS73 MEQS
           

>>CCDS73697.1 TUBGCP5 gene_id:114791|Hs108|chr15          (1024 aa)
 initn: 6782 init1: 6750 opt: 6750  Z-score: 7337.8  bits: 1369.3 E(32554):    0
Smith-Waterman score: 6750; 99.6% identity (99.7% similar) in 1015 aa overlap (1-1015:1-1015)

               10        20        30        40        50        60
pF1KSD MARHGPPWSRLDAQQERDVRELVRGVAGLQDEADPNFQLALNFAWSNFRFHRFLDVNSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MARHGPPWSRLDAQQERDVRELVRGVAGLQDEADPNFQLALNFAWSNFRFHRFLDVNSHK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD IEKTIEGIYEKFVIHSDLSKAASWKRLTEEFLNAPLPSIKEIKTDAHYSILSLLLCLSDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IEKTIEGIYEKFVIHSDLSKAASWKRLTEEFLNAPLPSIKEIKTDAHYSILSLLLCLSDS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD PSNSSYVETPRNKEVEKKDDFDWGKYLMEDEEMDIGPYMDTPNWSEESEEENDQQPLSRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PSNSSYVETPRNKEVEKKDDFDWGKYLMEDEEMDIGPYMDTPNWSEESEEENDQQPLSRE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DSGIQVDRTPLEEQDQNRKLDPCISWKDEPDDRSWLEHHVVHQYWTARPSQFPHSLHLHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DSGIQVDRTPLEEQDQNRKLDPCISWKDEPDDRSWLEHHVVHQYWTARPSQFPHSLHLHS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD NLAAVWDQHLYSSDPLYVPDDRVLVTETQVIRETLWLLSGVKKLFIFQLIDGKVTVRNNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NLAAVWDQHLYSSDPLYVPDDRVLVTETQVIRETLWLLSGVKKLFIFQLIDGKVTVRNNI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD IVTHLTHSCLRSVLEQIAAYGQVVFRLQEFIDEVMGHSSESMLPGSGSVPKKSTEAPFRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IVTHLTHSCLRSVLEQIAAYGQVVFRLQEFIDEVMGHSSESMLPGSGSVPKKSTEAPFRT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD YQAFMWALYKYFISFKEELAEIEKCIINNDTTITLAIVVDKLAPRLSQLKVLHKVFSTGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YQAFMWALYKYFISFKEELAEIEKCIINNDTTITLAIVVDKLAPRLSQLKVLHKVFSTGV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD AEVPPDTRNVVRASHLLNTLYKAILEYDNVGEASEQTVSLLFSLWVETVRPYLQTVDEWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AEVPPDTRNVVRASHLLNTLYKAILEYDNVGEASEQTVSLLFSLWVETVRPYLQTVDEWI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD VHGHLWDGAREFIIQRNKNVPVNHRDFWYATYTLYSVSEKTENEEKMSDNASASSGSDQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VHGHLWDGAREFIIQRNKNVPVNHRDFWYATYTLYSVSEKTENEEKMSDNASASSGSDQG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD PSSRQHTMVSFLKPVLKQIIMAGKSMQLLKNLQCAESTTCQAGARDAERKSLYTLFLESV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PSSRQHTMVSFLKPVLKQIIMAGKSMQLLKNLQCAESTTCQAGARDAERKSLYTLFLESV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD QSRLRHGEDSTPQVLTEQQATKENLMKMQSIAESHLELDDVHDPLLAINFARMYLEQSDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QSRLRHGEDSTPQVLTEQQATKENLMKMQSIAESHLELDDVHDPLLAINFARMYLEQSDF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD HEKFAGGDVCVDRSSESVTCQTFELTLRSCLYPHIDKQYLDCCGNLMQTLKKDYRLVEYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HEKFAGGDVCVDRSSESVTCQTFELTLRSCLYPHIDKQYLDCCGNLMQTLKKDYRLVEYL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD QAMRNFFLMEGGDTMYDFYTSIFDKIREKETWQNVSFLNVQLQEAVGQRYPEDSSRLSIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QAMRNFFLMEGGDTMYDFYTSIFDKIREKETWQNVSFLNVQLQEAVGQRYPEDSSRLSIS
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD FENVDTAKKKLPVHILDGLTLSYKVPWPVDIVISLECQKIYNQVFLLLLQIKWAKYSLDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FENVDTAKKKLPVHILDGLTLSYKVPWPVDIVISLECQKIYNQVFLLLLQIKWAKYSLDV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD LLFGELVSTAEKPRLKEGLIHEQDTVAQFGPQKEPVRQQIHRMFLLRVKLMHFVNSLHNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LLFGELVSTAEKPRLKEGLIHEQDTVAQFGPQKEPVRQQIHRMFLLRVKLMHFVNSLHNY
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD IMTRILHSTGLEFQHQVEEAKDLDQLIKIHYRYLSTIHDRCLLREKVSFVKEAIMKVLNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IMTRILHSTGLEFQHQVEEAKDLDQLIKIHYRYLSTIHDRCLLREKVSFVKEAIMKVLNL
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD ALMFADGWQAGLGTWRMESIEKMESDFKNCHMFLVTILNKAVCRGSFPHLESLALSLMAG
       ::::::::::::::::::::::::::::::::::::::::::::::::: : . :     
CCDS73 ALMFADGWQAGLGTWRMESIEKMESDFKNCHMFLVTILNKAVCRGSFPHCEYIMLKYFYL
              970       980       990      1000      1010      1020

           
pF1KSD MEQS
           
CCDS73 CISL
           




1024 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:40:31 2016 done: Thu Nov  3 07:40:32 2016
 Total Scan time:  4.450 Total Display time:  0.080

Function used was FASTA [36.3.4 Apr, 2011]
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