Result of FASTA (omim) for pF1KSDA1823
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1823, 365 aa
  1>>>pF1KSDA1823 365 - 365 aa - 365 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5698+/-0.00035; mu= 12.1230+/- 0.022
 mean_var=118.6235+/-24.411, 0's: 0 Z-trim(117.6): 89  B-trim: 1678 in 1/58
 Lambda= 0.117758
 statistics sampled from 29721 (29810) to 29721 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.35), width:  16
 Scan time:  8.890

The best scores are:                                      opt bits E(85289)
NP_001015877 (OMIM: 300414,301900) PHD finger prot ( 365) 2512 437.5 2.3e-122
NP_115834 (OMIM: 300414,301900) PHD finger protein ( 365) 2512 437.5 2.3e-122
NP_115711 (OMIM: 300414,301900) PHD finger protein ( 312) 1909 335.0 1.4e-91
NP_001035534 (OMIM: 147050,600807,607796) PHD fing ( 292)  311 63.5   7e-10
NP_001035533 (OMIM: 147050,600807,607796) PHD fing ( 331)  311 63.5 7.7e-10
XP_011535228 (OMIM: 611299) PREDICTED: G2/M phase- ( 667)  295 61.0 8.7e-09
XP_011535227 (OMIM: 611299) PREDICTED: G2/M phase- ( 706)  295 61.1 9.1e-09
NP_060239 (OMIM: 611299) G2/M phase-specific E3 ub ( 706)  295 61.1 9.1e-09
NP_001295026 (OMIM: 611299) G2/M phase-specific E3 ( 660)  214 47.3 0.00012
XP_006718902 (OMIM: 159555,605130) PREDICTED: hist (3133)  220 48.8  0.0002
XP_011541135 (OMIM: 159555,605130) PREDICTED: hist (3166)  220 48.8  0.0002
NP_005924 (OMIM: 159555,605130) histone-lysine N-m (3969)  220 48.9 0.00024
NP_001184033 (OMIM: 159555,605130) histone-lysine  (3972)  220 48.9 0.00024
XP_011541133 (OMIM: 159555,605130) PREDICTED: hist (4002)  220 48.9 0.00024
XP_011541132 (OMIM: 159555,605130) PREDICTED: hist (4004)  220 48.9 0.00024
XP_011541131 (OMIM: 159555,605130) PREDICTED: hist (4005)  220 48.9 0.00024
XP_016883035 (OMIM: 606834) PREDICTED: histone-lys (1703)  211 47.1 0.00036
XP_016883034 (OMIM: 606834) PREDICTED: histone-lys (2527)  211 47.2 0.00048
XP_011525863 (OMIM: 606834) PREDICTED: histone-lys (2527)  211 47.2 0.00048
XP_011525864 (OMIM: 606834) PREDICTED: histone-lys (2628)  211 47.2  0.0005
XP_016883033 (OMIM: 606834) PREDICTED: histone-lys (2685)  211 47.2 0.00051
NP_055542 (OMIM: 606834) histone-lysine N-methyltr (2715)  211 47.2 0.00051


>>NP_001015877 (OMIM: 300414,301900) PHD finger protein   (365 aa)
 initn: 2512 init1: 2512 opt: 2512  Z-score: 2317.9  bits: 437.5 E(85289): 2.3e-122
Smith-Waterman score: 2512; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365)

               10        20        30        40        50        60
pF1KSD MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD QGIYMVYCRKHKKTAHNSEADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QGIYMVYCRKHKKTAHNSEADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDTR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD STSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAHY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD YHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGKVEIDQQQLTQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGKVEIDQQQLTQQ
              310       320       330       340       350       360

            
pF1KSD QLNGN
       :::::
NP_001 QLNGN
            

>>NP_115834 (OMIM: 300414,301900) PHD finger protein 6 i  (365 aa)
 initn: 2512 init1: 2512 opt: 2512  Z-score: 2317.9  bits: 437.5 E(85289): 2.3e-122
Smith-Waterman score: 2512; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365)

               10        20        30        40        50        60
pF1KSD MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD QGIYMVYCRKHKKTAHNSEADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 QGIYMVYCRKHKKTAHNSEADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDTR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD STSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 STSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAHY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 KCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD YHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGKVEIDQQQLTQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 YHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGKVEIDQQQLTQQ
              310       320       330       340       350       360

            
pF1KSD QLNGN
       :::::
NP_115 QLNGN
            

>>NP_115711 (OMIM: 300414,301900) PHD finger protein 6 i  (312 aa)
 initn: 1908 init1: 984 opt: 1909  Z-score: 1765.2  bits: 335.0 E(85289): 1.4e-91
Smith-Waterman score: 1909; 95.6% identity (96.3% similar) in 295 aa overlap (1-292:1-295)

               10        20        30        40        50        60
pF1KSD MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 SLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPS
               70        80        90       100       110       120

              130       140        150       160       170         
pF1KSD QGIYMVYCRKHKKTAHNSEA-DLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDT
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_115 QGIYMVYCRKHKKTAHNSEAADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDT
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KSD RSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 RSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFNAKKAAAH
              190       200       210       220       230       240

     240       250       260       270       280         290       
pF1KSD YKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCT--LCSQPGATIGCEIKAC
       ::::::::::::::::::::::::::::::::::::::: :.  .:      : :     
NP_115 YKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMVCSFYICYATLHLICCFKFRV
              250       260       270       280       290       300

       300       310       320       330       340       350       
pF1KSD VKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGKVEIDQQQL
                                                                   
NP_115 HPKFIQSSENLK                                                
              310                                                  

>>NP_001035534 (OMIM: 147050,600807,607796) PHD finger p  (292 aa)
 initn: 376 init1: 258 opt: 311  Z-score: 298.4  bits: 63.5 E(85289): 7e-10
Smith-Waterman score: 348; 39.8% identity (74.8% similar) in 123 aa overlap (14-133:3-122)

               10        20        30        40        50        60
pF1KSD MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNE
                    .: :..:   .: : . : .......:::..:.:.::.::  . :..
NP_001            MEKRTCALCP--KDVEYNVLYFAQSENIAAHENCLLYSSGLVECE-DQD
                          10          20        30        40       

                  70        80        90       100       110       
pF1KSD SLG---GFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIRE
        :.   .:..:.:.:::.:: :: :..::  :::.:::.:.:...::. :: .: :  . 
NP_001 PLNPDRSFDVESVKKEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQS
         50        60        70        80        90       100      

       120       130       140       150       160       170       
pF1KSD KPSQGIYMVYCRKHKKTAHNSEADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSE
          .::: . :..: .                                            
NP_001 DGVRGIYKLLCQQHAQFPIIAQSAKFSGVKRKRGRKKPLSGNHVQPPETMKCNTFIRQVK
        110       120       130       140       150       160      

>>NP_001035533 (OMIM: 147050,600807,607796) PHD finger p  (331 aa)
 initn: 376 init1: 258 opt: 311  Z-score: 297.6  bits: 63.5 E(85289): 7.7e-10
Smith-Waterman score: 352; 37.5% identity (72.1% similar) in 136 aa overlap (1-133:29-161)

                                           10        20        30  
pF1KSD                             MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLL
                                   . ..: :     ..: :..:   .: : . : 
NP_001 MAQASPPRPERVLGASSPEARPAQEALLLPTGVFQVAEKMEKRTCALCP--KDVEYNVLY
               10        20        30        40          50        

             40        50        60           70        80         
pF1KSD ISENQKVAAHHKCMLFSSALVSSHSDNESLG---GFSIEDVQKEIKRGTKLMCSLCHCPG
       .......:::..:.:.::.::  . :.. :.   .:..:.:.:::.:: :: :..::  :
NP_001 FAQSENIAAHENCLLYSSGLVECE-DQDPLNPDRSFDVESVKKEIQRGRKLKCKFCHKRG
       60        70        80         90       100       110       

      90       100       110       120       130       140         
pF1KSD ATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEESFNEH
       ::.:::.:.:...::. :: .: :  .    .::: . :..: .                
NP_001 ATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQHAQFPIIAQSAKFSGVKRK
       120       130       140       150       160       170       

     150       160       170       180       190       200         
pF1KSD ELEPSSPKSKKKSRKGRPRKTNFKGLSEDTRSTSSHGTDEMESSSYRDRSPHRSSPSDTR
                                                                   
NP_001 RGRKKPLSGNHVQPPETMKCNTFIRQVKEEHGRHTDATVKVPFLKKCKEAGLLNYLLEEI
       180       190       200       210       220       230       

>>XP_011535228 (OMIM: 611299) PREDICTED: G2/M phase-spec  (667 aa)
 initn: 316 init1: 200 opt: 295  Z-score: 278.7  bits: 61.0 E(85289): 8.7e-09
Smith-Waterman score: 295; 31.4% identity (65.4% similar) in 156 aa overlap (6-153:3-153)

               10        20          30        40        50        
pF1KSD MSSSVEQKKGPTRQRKCGFCKSNRD--KECGQLLISENQKVAAHHKCMLFSSALVSSHSD
            :.: : ...  : ::... :  .. :.   .:. ....:. :.:.::.. .  ..
XP_011    MNESKPGDSQNLACVFCRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKE
                  10        20        30        40        50       

       60        70        80        90       100       110        
pF1KSD NESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREK
       .:.. :: :::..::..:..:: : .:.  ::.::: .  :.:.::. :.:.     :: 
XP_011 EEGVYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQ-----REC
        60        70        80        90       100            110  

      120         130           140       150       160       170  
pF1KSD PSQ--GIYMVYCRKHKK----TAHNSEADLEESFNEHELEPSSPKSKKKSRKGRPRKTNF
         :  : .  .:  :.     :..: . .:  ..  . .::                   
XP_011 IFQFTGNFASFCWDHRPVQIITSNNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHR
            120       130       140       150       160       170  

            180       190       200       210       220       230  
pF1KSD KGLSEDTRSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFN
                                                                   
XP_011 DCLQVQAINAGVFFFRCTICNNSDIFQKEMLRMGIHIPENKWEIKRCQCCGSSGTHLACS
            180       190       200       210       220       230  

>>XP_011535227 (OMIM: 611299) PREDICTED: G2/M phase-spec  (706 aa)
 initn: 265 init1: 237 opt: 295  Z-score: 278.4  bits: 61.1 E(85289): 9.1e-09
Smith-Waterman score: 295; 31.4% identity (65.4% similar) in 156 aa overlap (6-153:3-153)

               10        20          30        40        50        
pF1KSD MSSSVEQKKGPTRQRKCGFCKSNRD--KECGQLLISENQKVAAHHKCMLFSSALVSSHSD
            :.: : ...  : ::... :  .. :.   .:. ....:. :.:.::.. .  ..
XP_011    MNESKPGDSQNLACVFCRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKE
                  10        20        30        40        50       

       60        70        80        90       100       110        
pF1KSD NESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREK
       .:.. :: :::..::..:..:: : .:.  ::.::: .  :.:.::. :.:.     :: 
XP_011 EEGVYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQ-----REC
        60        70        80        90       100            110  

      120         130           140       150       160       170  
pF1KSD PSQ--GIYMVYCRKHKK----TAHNSEADLEESFNEHELEPSSPKSKKKSRKGRPRKTNF
         :  : .  .:  :.     :..: . .:  ..  . .::                   
XP_011 IFQFTGNFASFCWDHRPVQIITSNNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHR
            120       130       140       150       160       170  

            180       190       200       210       220       230  
pF1KSD KGLSEDTRSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFN
                                                                   
XP_011 DCLQVQAINAGVFFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAYQELLQHYER
            180       190       200       210       220       230  

>>NP_060239 (OMIM: 611299) G2/M phase-specific E3 ubiqui  (706 aa)
 initn: 265 init1: 237 opt: 295  Z-score: 278.4  bits: 61.1 E(85289): 9.1e-09
Smith-Waterman score: 295; 31.4% identity (65.4% similar) in 156 aa overlap (6-153:3-153)

               10        20          30        40        50        
pF1KSD MSSSVEQKKGPTRQRKCGFCKSNRD--KECGQLLISENQKVAAHHKCMLFSSALVSSHSD
            :.: : ...  : ::... :  .. :.   .:. ....:. :.:.::.. .  ..
NP_060    MNESKPGDSQNLACVFCRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKE
                  10        20        30        40        50       

       60        70        80        90       100       110        
pF1KSD NESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREK
       .:.. :: :::..::..:..:: : .:.  ::.::: .  :.:.::. :.:.     :: 
NP_060 EEGVYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQ-----REC
        60        70        80        90       100            110  

      120         130           140       150       160       170  
pF1KSD PSQ--GIYMVYCRKHKK----TAHNSEADLEESFNEHELEPSSPKSKKKSRKGRPRKTNF
         :  : .  .:  :.     :..: . .:  ..  . .::                   
NP_060 IFQFTGNFASFCWDHRPVQIITSNNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHR
            120       130       140       150       160       170  

            180       190       200       210       220       230  
pF1KSD KGLSEDTRSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHVGEEENEARGKLHIFN
                                                                   
NP_060 DCLQVQAINAGVFFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAYQELLQHYER
            180       190       200       210       220       230  

>>NP_001295026 (OMIM: 611299) G2/M phase-specific E3 ubi  (660 aa)
 initn: 228 init1: 200 opt: 214  Z-score: 204.4  bits: 47.3 E(85289): 0.00012
Smith-Waterman score: 214; 33.3% identity (64.0% similar) in 111 aa overlap (49-153:2-107)

       20        30        40        50        60        70        
pF1KSD FCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGT
                                     ::.. .  ...:.. :: :::..::..:..
NP_001                              MSSGIWQRGKEEEGVYGFLIEDIRKEVNRAS
                                            10        20        30 

       80        90       100       110       120         130      
pF1KSD KLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQ--GIYMVYCRKHKK---
       :: : .:.  ::.::: .  :.:.::. :.:.     ::   :  : .  .:  :.    
NP_001 KLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQ-----RECIFQFTGNFASFCWDHRPVQI
              40        50        60             70        80      

            140       150       160       170       180       190  
pF1KSD -TAHNSEADLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDTRSTSSHGTDEMES
        :..: . .:  ..  . .::                                       
NP_001 ITSNNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAINAGVFFFRCTIC
         90       100       110       120       130       140      

>>XP_006718902 (OMIM: 159555,605130) PREDICTED: histone-  (3133 aa)
 initn: 191 init1: 155 opt: 220  Z-score: 200.5  bits: 48.8 E(85289): 0.0002
Smith-Waterman score: 251; 27.5% identity (54.0% similar) in 200 aa overlap (136-329:964-1141)

         110       120       130       140       150       160     
pF1KSD HCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEESFNEHELEPSSPKSKKKSRKG
                                     ::     :.  : :  .:  :  ::     
XP_006 SVKKSRFWEPNKVSSNSGMLPNAVLPPSLDHNYAQWQEREENSHTEQP--PLMKKIIPAP
           940       950       960       970       980         990 

         170       180       190         200          210          
pF1KSD RPRKTNFKGLSEDTRSTSSHGTDEMESSSYRDR--SPHRSSPS---DTRPKCGFCHV-GE
       .:     :: .:    :  :       :. :.:  ::. . :    :.: .:..: . :.
XP_006 KP-----KGPGEPDSPTPLHPPTPPILSTDRSREDSPELNPPPGIEDNR-QCALCLTYGD
                 1000      1010      1020      1030       1040     

     220       230       240       250       260       270         
pF1KSD EENEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMK
       .  .  :.: .. ...  .: .: :.:. .         :  : ..:.: . . :::...
XP_006 DSANDAGRL-LYIGQNEWTHVNCALWSAEVF--------EDDDGSLKNVHMAVIRGKQLR
        1050       1060      1070              1080      1090      

     280       290       300       310       320       330         
pF1KSD CTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEED
       : .:..::::.:: . .:...::. :.   .  ....      :.::. :          
XP_006 CEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLDDK-----KVYCQRHRDLIKGEVVP
       1100      1110      1120      1130           1140      1150 

     340       350       360                                       
pF1KSD EERESKSRGKVEIDQQQLTQQQLNGN                                  
                                                                   
XP_006 ENGFEVFRRVFVDFEGISLRRKFLNGLEPENIHMMIGSMTIDCLGILNDLSDCEDKLFPI
            1160      1170      1180      1190      1200      1210 




365 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:26:49 2016 done: Thu Nov  3 07:26:50 2016
 Total Scan time:  8.890 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com