GENSCAN 1.0	Date run:  3-Nov-116	Time: 06:58:57

Sequence gi568815585f:44889655_45128000 : 238346 bp : 41.91% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 PlyA -   1155   1150    6                              -0.45
 1.04 Term -   2357   2076  282  2  0   76   39   179 0.245   6.24
 1.03 Intr -   4279   4133  147  1  0  114   61    13 0.190   0.71
 1.02 Intr -  14284  14065  220  0  1  113   82   170 0.668  16.28
 1.01 Init -  21148  21099   50  1  2   79   97    47 0.577   5.17
 1.00 Prom -  21218  21179   40                              -7.55

 2.00 Prom +  27795  27834   40                              -8.15
 2.01 Init +  28337  28479  143  1  2   59   57   122 0.474   5.86
 2.02 Intr +  35003  35292  290  2  2   42   10   154 0.022  -1.03
 2.03 Term +  40685  40923  239  0  2   54   47   197 0.677   7.55
 2.04 PlyA +  42817  42822    6                               1.05

 3.07 PlyA -  44706  44701    6                               1.05
 3.06 Term -  51668  51552  117  2  0   67   48   142 0.984   5.66
 3.05 Intr -  54020  53788  233  0  2   53   54   206 0.996  10.27
 3.04 Intr -  60184  60068  117  2  0  102  115     6 0.941   4.22
 3.03 Intr -  69920  69727  194  1  2   56  107   167 0.321  13.61
 3.02 Intr -  76282  76190   93  0  0   87   94    87 0.306   7.36
 3.01 Init -  80026  80007   20  1  2   54   83    31 0.320  -1.33
 3.00 Prom -  81342  81303   40                              -7.55

 4.00 Prom +  81572  81611   40                              -4.15
 4.01 Init +  84848  84853    6  1  0   65  106     0 0.586   0.48
 4.02 Term +  86631  87083  453  2  0  -46   43   381 0.958  14.37
 4.03 PlyA +  90099  90104    6                               1.05

 5.00 Prom +  96348  96387   40                              -6.45
 5.01 Init +  99577  99630   54  0  0   86  105    68 0.050   9.64
 5.02 Intr +  99968 100088  121  1  1  -10  107   165 0.030   7.75
 5.03 Intr + 114657 114783  127  1  1   47   86   208 0.008  15.32
 5.04 Intr + 116548 116649  102  1  0   64   54   159 0.465   8.47
 5.05 Intr + 119141 119225   85  2  1   67   69    43 0.290  -0.80
 5.06 Intr + 125298 125429  132  2  0   44   95   152 0.993  11.42
 5.07 Intr + 125778 125942  165  2  0   83  100   123 0.999  12.24
 5.08 Intr + 130676 130774   99  1  0   97  101    47 0.901   6.29
 5.09 Term + 138131 138349  219  1  0  104   42   147 0.993   7.76
 5.10 PlyA + 138586 138591    6                               1.05

 6.00 Prom + 141199 141238   40                              -5.75
 6.01 Init + 148666 148758   93  0  0  114   60    26 0.692   2.83
 6.02 Intr + 156928 157070  143  0  2   20   64   136 0.016   2.63
 6.03 Intr + 163334 163505  172  2  1   38   69   109 0.081   3.02
 6.04 Term + 164587 164838  252  0  0  120   38   187 0.566  11.55
 6.05 PlyA + 165166 165171    6                               1.05

 7.00 Prom + 171645 171684   40                              -6.75
 7.01 Init + 172083 172101   19  2  1   97   48    14 0.602  -1.39
 7.02 Intr + 175066 175258  193  2  1   85   78   126 0.549   8.93
 7.03 Intr + 188528 188784  257  2  2  130   70    66 0.323   5.16
 7.04 Intr + 194090 194168   79  0  1   68   94    76 0.199   3.89
 7.05 Intr + 216605 216775  171  2  0   82   54   118 0.488   5.94
 7.06 Intr + 230868 231067  200  0  2   92   90   190 0.821  17.67
 7.07 Intr + 233566 233697  132  2  0   63   28   148 0.393   6.00
 7.08 Term + 234353 234483  131  0  2   20   45   110 0.206  -2.74
 7.09 PlyA + 236084 236089    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  17698  17452  247  2  1   73   75   149 0.928   7.70
S.002 Init +  99434  99630  197  1  2   77  105   117 0.912  10.75
S.003 Init + 114626 114783  158  1  2   52   86   223 0.989  17.93


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815585f:44889655_45128000|GENSCAN_predicted_peptide_1|232_aa
MKEEGLSIATNCLPKDRTSPQSPPMMSPGNCWSFPSRGLGHSCFDSKSFNAKASVAVRNR
EGSNAAGQLPPGSVVASLDEERKLVLELPLGLKACFTSCLLSRSLSILQRRHPRAITNAP
GVLLLPGHAFLINVYIKTQWGMGQQFLLAGDVCQCLETFLVSQQQLKVGVVLASSGQTEI
RDATKHPTTHTATPTTKNQPAPNVHSAEVETPCSTTANCVFILSDKCLGLYC

>gi568815585f:44889655_45128000|GENSCAN_predicted_CDS_1|699_bp
atgaaggaagaaggattgtctattgccacaaactgtttgccaaaagataggacttctccc
cagtcccctcctatgatgtcacctggcaactgctggagcttcccaagcagaggattagga
cattcttgttttgactccaagagcttcaacgcaaaggcctctgtggctgttaggaacaga
gagggcagtaatgcggctggccagctgccaccagggtcagtggtggccagcctggatgaa
gaaaggaagctcgtgcttgagctgcctctgggcctcaaggcatgcttcacctcctgcctc
ctgtccagatccctgtcaatcctgcaacgtagacatccgagggccatcactaatgcaccg
ggtgtcctccttctgcctgggcatgcatttttaattaatgtttatatcaagactcagtgg
gggatggggcagcaatttctcctcgcaggggatgtttgccaatgtctggagacatttttg
gtttcacagcagcagttgaaggtgggagtggtattggcatccagtgggcagacagagatc
agggatgctactaaacatcctacaacgcacacagcaacccccacaacaaagaatcagcca
gccccaaatgtccacagtgccgaggttgagacaccctgttctactacagcaaactgtgtt
tttatcctttcagacaaatgcttaggtctatattgttag

>gi568815585f:44889655_45128000|GENSCAN_predicted_peptide_2|223_aa
MWETAIATPSLDKLSLLGRLPPTPSRSSVGVKPAPAPARSLQRFKPFSCNLLGIYTWAIN
EDLRIHIAKAELLRVHPQPHSPASSLCIFSIPVNSSFILPIVPSQNPGITLDSILSQPTS
NPSENPTGSIMKIDPELDHFSHSPGGVLEEGSCWLPVPKSDHDHTTSSRQQQLLPVFPPF
PEAASPPPPHLSLLRDTSTYWLASPPQHEASGPAKRDLPSPEG

>gi568815585f:44889655_45128000|GENSCAN_predicted_CDS_2|672_bp
atgtgggagacggcaatagcgactccaagcctagacaaattgagtcttctcggtcggctt
ccgcccactccatcgcgttcatccgtaggcgtcaaacctgctcctgcgcctgcgcggagt
ctgcagcggtttaaaccgttcagctgcaaccttcttggcatctacacatgggcaattaat
gaggacctcaggattcacatagctaaagctgagctcctgagagtccatccccaaccgcac
tccccagccagctccctctgcatcttctccattccagttaatagcagctttattctcccc
attgttccaagccagaaccctggaatcaccctggattccattctctctcagcctacctcc
aacccctcagaaaatcctactggctccatcatgaaaatagacccagaattggatcacttc
tcccattcccctggaggggtactagaggaagggagctgttggcttcctgttcctaagagt
gaccatgatcacaccacctcatcccggcagcagcagttgcttccagtgtttccaccattt
ccagaagcagcctcaccacctcctccccatctctctctgctcagagacaccagcacctac
tggctggcatcccctcctcagcatgaggcatcggggccagccaagcgggaccttcctagc
ccagagggctga

>gi568815585f:44889655_45128000|GENSCAN_predicted_peptide_3|257_aa
MRKVKKRNYPTLANIERKKKLKLEKEKRGAVLTTTQYGKMKGMSRHSQMAKIRSPGKNHK
WKNDNSRQRAVTGSGSHLCDLKLEGPPEANADPLGVLINSDSESDKEEKPQHSVIPKEVT
PALCSLMSSYGSLSGSESEPEETPIKTEADVLAENQVLDSSAPKSPSQDVKATVRNFSEA
KSENRKKSFEKTNPKRKKDYHNYQTLFEPRTHHPYLLEMLLAPDIRHERNVILQCVRYII
KKDFFGLDTNSAKSKDV

>gi568815585f:44889655_45128000|GENSCAN_predicted_CDS_3|774_bp
atgaggaaggtgaagaagagaaactatccaactctggccaatattgaaaggaagaagaag
ttaaaacttgaaaaggagaagagaggagcagtattgacaacaacacaatatggcaagatg
aaggggatgtccagacattcacaaatggcaaagatcagaagtcctggcaagaatcacaaa
tggaaaaacgacaattctagacagagagcagtcactggatcaggcagtcacttgtgtgat
ttgaagctagaaggtccaccggaggcaaatgcagatcctcttggtgttttgataaacagt
gattctgagtctgataaggaggagaaaccacaacattctgtgatacccaaggaagtgaca
ccagccctatgctcactaatgagtagctatggcagtctttcagggtcagagagtgagcca
gaagaaactcccatcaagactgaagcagacgttttggcagaaaaccaggttcttgatagc
agtgctcctaagagtccaagtcaagatgttaaagcaactgttagaaatttttcagaagcc
aagagtgagaaccgaaagaaaagctttgaaaaaacaaaccctaagaggaaaaaagattat
cacaactatcaaacgttattcgaaccaagaacacaccatccatatctcttggaaatgctt
ctagctccggacattcgacatgaaagaaatgtgattttgcagtgtgttcggtacatcatc
aaaaaagacttttttggactggatactaattctgcgaaaagtaaagatgtatag

>gi568815585f:44889655_45128000|GENSCAN_predicted_peptide_4|152_aa
MKKKEGRRRRRKEEEKKGGRRRRKEKGGGGGGEGEGEEEEEKEEEEEKRRRRKRKRRKRK
KKKKNNNNKRRRKKKQPIDRKETSRTNKTFFKKSSYLGSGVMRRKPCIYKEATYRSQGTS
DTVLQNSYVKLLHGLSPFYVAITEYIIRLDNL

>gi568815585f:44889655_45128000|GENSCAN_predicted_CDS_4|459_bp
atgaaaaagaaggaaggaaggagaaggagaagaaaggaggaggagaagaaaggaggaagg
agaagaagaaaggagaaaggaggaggaggaggaggcgaaggtgaaggtgaggaggaggag
gagaaggaagaggaagaagagaagaggaggaggaggaagaggaagaggaggaagaggaag
aagaaaaagaagaataacaacaacaagaggaggaggaagaagaaacaaccaatagataga
aaagaaacaagcagaacaaacaaaacattttttaaaaagtccagctacttggggagtggt
gtcatgaggagaaaaccttgtatctataaagaagctacctacagaagccaaggaacttca
gataccgtgcttcaaaattcctatgtcaaactacttcatggtctcagtccattttatgtt
gctataactgaatacatcataagattggataatttataa

>gi568815585f:44889655_45128000|GENSCAN_predicted_peptide_5|367_aa
MGGCDSEEGFDPAAGSEDTHICDQCPPPRMARDLIGPALPPGFKARGTAEDEERDPSPGP
ALPPNYKSSSSDSSDSDEDSSSLYEEGNQESEEDDSGPTARKQRKNQDDDDDDDDGFFGP
ALPPGFKKQDDSPPRPIIGPALPPGFIKSTQKSDKGRDDPGQQETDSSEDEDIIGPMPAK
GPVNYNVTTEFEKRAQRMKEKLTKGDDDSSKPIVRESWMTELPPEMKDFGLGPRTFKRRA
DDTSGDRSIWTDTPADRERKAKETQEARKSSSKKDEEHILSGRDKRLAEQVSSYNESKRS
ESLMDIHHKKLKSKAAEDKNKPQERIPFDRDKDLKVNRFDEAQKKALIKKSRELNTRFSH
GKGNMFL

>gi568815585f:44889655_45128000|GENSCAN_predicted_CDS_5|1104_bp
atggggggctgcgactcagaggaaggctttgacccggctgcgggaagcgaggacactcat
atctgtgaccagtgtccgccaccgcggatggcaagagacctgatcggaccggccctgccg
cccggcttcaaggcccgcggaacagcggaggacgaagagcgggacccgagccctggacca
gctctgccccctaattataaaagcagtagttcagattcatcagacagcgatgaagacagt
agttctttgtacgaagaaggaaatcaagaatctgaagaagatgacagtggtccaactgca
agaaaacagaggaaaaatcaggatgatgacgatgatgatgatgatgggttttttggacca
gcccttcctcctggatttaaaaagcaggatgattctcctccaaggcccataataggtcct
gcattgccacctggtttcattaaatctacacagaaaagtgacaagggcagagatgatcca
ggacaacaggaaacagacagcagtgaagatgaggatattattggaccaatgcctgcaaaa
ggaccagttaactataatgtaacgacagagtttgaaaaaagggcccagagaatgaaagaa
aaactgaccaaaggagatgatgattcatctaaacccattgtaagagagtcatggatgact
gaacttcctccagaaatgaaagactttggtcttgggccaaggacttttaagagaagagct
gatgacacatctggagatcgatcaatctggacagatactccagctgatagggaaaggaaa
gctaaggaaacacaagaagcaaggaagtcatccagtaagaaagatgaagaacatatatta
tcaggaagagataagagactggctgagcaggtatcttcatacaatgaatcaaaaagatca
gaatctcttatggacatacatcataaaaagttaaagagtaaggctgctgaagacaaaaat
aagcctcaagagagaataccatttgaccgtgataaagatctcaaggttaatcggtttgat
gaagctcagaaaaaagccctaataaaaaaatctagagaactaaacaccagattttcacac
ggcaaaggcaatatgtttttataa

>gi568815585f:44889655_45128000|GENSCAN_predicted_peptide_6|219_aa
MPSQSEVLIPSIGLGLGPIDGWAVYFGQAAQEVPTISALDACKCPEEAFVCGLILIAASQ
VFPPALSVYLLLPEELFGRSQAAAAEPPSRTPHENIGFMSPTGNVYRVWRMMAGAQGVGS
EVEKAGSPRLIHVIIQFLTPQKAFISFITQFLGARNRTDAAGLKEQRNLSEGYWMACRNL
RGPEPGTEALQPGTIAHKKALETLLCWTPQVPPLTTRDQ

>gi568815585f:44889655_45128000|GENSCAN_predicted_CDS_6|660_bp
atgcccagccaatcagaagttttgattccatctataggtttggggttgggcccaatagat
ggttgggccgtctattttgggcaagctgcccaggaggtgcctaccatctctgctctggat
gcttgcaaatgtcccgaagaggctttcgtatgtggtctaatactgatagctgcttctcag
gtttttccgccagcactgtctgtgtacctgcttctgcctgaagagctgtttggaaggtca
caagcagcagcagctgagccaccatcccgaactccacatgagaacatcggcttcatgagc
cccacaggcaacgtgtacagggtctggagaatgatggctggggcacaaggtgtgggttca
gaagtggagaaagcagggtcaccaaggttaatacatgtcattattcagttcctcacacct
caaaaggcttttatttcatttatcactcagtttttaggtgcaaggaacagaaccgacgct
gctggacttaaggagcaaaggaatttatcagaaggatattggatggcttgcaggaacctg
agaggcccagagccaggcactgaggctctgcagccaggaacaattgcccacaagaaagcc
ttagaaacacttctgtgctggaccccacaagttccaccactgacaacacgggatcaataa

>gi568815585f:44889655_45128000|GENSCAN_predicted_peptide_7|393_aa
MASNSLVLITVFHGVSEDCPCIAWPPSPCVSVEETGTLAPAVSAQQSAYGKAGAQDFLDE
GVNCPYLCFVKFTVRTTASHLLNVLSCGSNHVISEYDIILPRSQFKISRKKNSTECQAVA
PQTVDHMEQIQLPEVYSCNLWIQVATLERGNPDSCAGLILKRKLSKARSPSSLESSSHWN
IHSREHMSEQVRDLDGCFGCFQEQAACRPGSSAQVGVPATPEAPEGMLQCSFSSAVCGQC
VLAGKERRLFASQRGLSFVPDARSSALRLLGSLLHPARLHRLQTHGRARGTRLDRRQTEH
RSVASQAARLTKEDDHPDRGGLVFSQGYMYGCTPLLEPPKKLSRRAYGRPGVLLLRGHVG
HEVPHPVAVAKFIVLPGNELDKVVVEGNASPSI

>gi568815585f:44889655_45128000|GENSCAN_predicted_CDS_7|1182_bp
atggcgtccaatagcctagtgcttatcacagtttttcacggtgtgtctgaggactgcccg
tgcattgcctggccccccagcccatgtgtgagtgtggaggaaacaggaaccctggctcct
gctgtcagtgcccagcagagtgcttatggcaaagcaggggctcaggattttttggatgaa
ggagtgaattgtccatatctgtgtttcgtaaagttcacagttaggacaactgcttcacac
ttgttaaatgtgttaagttgtggttctaaccatgtgatatcagagtatgacataattctt
cctaggtcccagtttaaaatttccagaaaaaagaattctacagagtgtcaagcagttgcc
ccccaaactgtggatcatatggaacaaattcagctgccagaggtctactcctgtaaccta
tggatccaggtggcaaccctcgaaagagggaatcctgatagctgcgcagggcttatcctg
aaacgcaagctcagcaaggcaagaagcccatcctccttggagagctctagtcactggaac
attcacagcagggagcacatgagtgagcaagtgcgggatctggatggctgctttgggtgc
ttccaggagcaggctgcgtgcaggcctggcagcagtgcccaggttggggtgcctgcaacc
cctgaagctccagagggcatgttacagtgttcttttagctctgccgtctgtggacagtgt
gttctggcaggtaaggaacgccggctcttcgcctctcagcgcggcttgtcctttgttccg
gacgcccgctcctcagccctgcggctcctggggtcgctgctgcatcccgcacgcctccac
cggctgcagacccatggccgagcgcggggaactcgacttgaccggcgccaaacagaacac
aggagtgtggctagtcaagctgcacgcttgaccaaagaggatgaccatccggatagagga
ggactggtcttcagtcaagggtatatgtatggttgtactcccctgctagaacctccaaag
aagctttcaagaagagcttatggcaggccgggggtcttactccttagaggccatgtgggc
catgaggtcccccaccctgttgctgtagccaaattcattgtcttaccaggaaatgaactt
gacaaagtggtcgttgagggcaatgccagccccagcatctaa