Result of FASTA (ccds) for pF1KSDA1605
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1605, 877 aa
  1>>>pF1KSDA1605 877 - 877 aa - 877 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2699+/-0.000886; mu= 21.1801+/- 0.053
 mean_var=69.9956+/-13.779, 0's: 0 Z-trim(106.2): 11  B-trim: 14 in 2/50
 Lambda= 0.153299
 statistics sampled from 8836 (8840) to 8836 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.272), width:  16
 Scan time:  4.120

The best scores are:                                      opt bits E(32554)
CCDS83363.1 GBA2 gene_id:57704|Hs108|chr9          ( 877) 6169 1374.0       0
CCDS6589.1 GBA2 gene_id:57704|Hs108|chr9           ( 927) 5888 1311.9       0


>>CCDS83363.1 GBA2 gene_id:57704|Hs108|chr9               (877 aa)
 initn: 6169 init1: 6169 opt: 6169  Z-score: 7365.8  bits: 1374.0 E(32554):    0
Smith-Waterman score: 6169; 100.0% identity (100.0% similar) in 877 aa overlap (1-877:1-877)

               10        20        30        40        50        60
pF1KSD MGTQDPGNMGTGVPASEQISCAKEDPQVYCPEETGGTKDVQVTDCKSPEDSRPPKETDCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MGTQDPGNMGTGVPASEQISCAKEDPQVYCPEETGGTKDVQVTDCKSPEDSRPPKETDCC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD NPEDSGQLMVSYEGKAMGYQVPPFGWRICLAHEFTEKRKPFQANNVSLSNMIKHIGMGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NPEDSGQLMVSYEGKAMGYQVPPFGWRICLAHEFTEKRKPFQANNVSLSNMIKHIGMGLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD YLQWWYRKTHVEKKTPFIDMINSVPLRQIYGCPLGGIGGGTITRGWRGQFCRWQLNPGMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 YLQWWYRKTHVEKKTPFIDMINSVPLRQIYGCPLGGIGGGTITRGWRGQFCRWQLNPGMY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD QHRTVIADQFTVCLRREGQTVYQQVLSLERPSVLRSWNWGLCGYFAFYHALYPRAWTVYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 QHRTVIADQFTVCLRREGQTVYQQVLSLERPSVLRSWNWGLCGYFAFYHALYPRAWTVYQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LPGQNVTLTCRQITPILPHDYQDSSLPVGVFVWDVENEGDEALDVSIMFSMRNGLGGGDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LPGQNVTLTCRQITPILPHDYQDSSLPVGVFVWDVENEGDEALDVSIMFSMRNGLGGGDD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD APGGLWNEPFCLERSGETVRGLLLHHPTLPNPYTMAVAARVTAATTVTHITAFDPDSTGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 APGGLWNEPFCLERSGETVRGLLLHHPTLPNPYTMAVAARVTAATTVTHITAFDPDSTGQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD QVWQDLLQDGQLDSPTGQSTPTQKGVGIAGAVCVSSKLRPRGQCRLEFSLAWDMPRIMFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 QVWQDLLQDGQLDSPTGQSTPTQKGVGIAGAVCVSSKLRPRGQCRLEFSLAWDMPRIMFG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD AKGQVHYRRYTRFFGQDGDAAPALSHYALCRYAEWEERISAWQSPVLDDRSLPAWYKSAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 AKGQVHYRRYTRFFGQDGDAAPALSHYALCRYAEWEERISAWQSPVLDDRSLPAWYKSAL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD FNELYFLADGGTVWLEVLEDSLPEELGRNMCHLRPTLRDYGRFGYLEGQEYRMYNTYDVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 FNELYFLADGGTVWLEVLEDSLPEELGRNMCHLRPTLRDYGRFGYLEGQEYRMYNTYDVH
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD FYASFALIMLWPKLELSLQYDMALATLREDLTRRRYLMSGVMAPVKRRNVIPHDIGDPDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 FYASFALIMLWPKLELSLQYDMALATLREDLTRRRYLMSGVMAPVKRRNVIPHDIGDPDD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD EPWLRVNAYLIHDTADWKDLNLKFVLQVYRDYYLTGDQNFLKDMWPVCLAVMESEMKFDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 EPWLRVNAYLIHDTADWKDLNLKFVLQVYRDYYLTGDQNFLKDMWPVCLAVMESEMKFDK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD DHDGLIENGGYADQTYDGWVTTGPSAYCGGLWLAAVAVMVQMAALCGAQDIQDKFSSILS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DHDGLIENGGYADQTYDGWVTTGPSAYCGGLWLAAVAVMVQMAALCGAQDIQDKFSSILS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD RGQEAYERLLWNGRYYNYDSSSRPQSRSVMSDQCAGQWFLKACGLGEGDTEVFPTQHVVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 RGQEAYERLLWNGRYYNYDSSSRPQSRSVMSDQCAGQWFLKACGLGEGDTEVFPTQHVVR
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ALQTIFELNVQAFAGGAMGAVNGMQPHGVPDKSSVQSDEVWVGVVYGLAATMIQELLPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ALQTIFELNVQAFAGGAMGAVNGMQPHGVPDKSSVQSDEVWVGVVYGLAATMIQELLPSG
              790       800       810       820       830       840

              850       860       870       
pF1KSD FCLWVIVISSTCWELLEGKDSTASIYPVEVALQRVPS
       :::::::::::::::::::::::::::::::::::::
CCDS83 FCLWVIVISSTCWELLEGKDSTASIYPVEVALQRVPS
              850       860       870       

>>CCDS6589.1 GBA2 gene_id:57704|Hs108|chr9                (927 aa)
 initn: 5886 init1: 5886 opt: 5888  Z-score: 7029.5  bits: 1311.9 E(32554):    0
Smith-Waterman score: 5888; 99.5% identity (99.5% similar) in 842 aa overlap (1-841:1-842)

               10        20        30        40        50        60
pF1KSD MGTQDPGNMGTGVPASEQISCAKEDPQVYCPEETGGTKDVQVTDCKSPEDSRPPKETDCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MGTQDPGNMGTGVPASEQISCAKEDPQVYCPEETGGTKDVQVTDCKSPEDSRPPKETDCC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD NPEDSGQLMVSYEGKAMGYQVPPFGWRICLAHEFTEKRKPFQANNVSLSNMIKHIGMGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 NPEDSGQLMVSYEGKAMGYQVPPFGWRICLAHEFTEKRKPFQANNVSLSNMIKHIGMGLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD YLQWWYRKTHVEKKTPFIDMINSVPLRQIYGCPLGGIGGGTITRGWRGQFCRWQLNPGMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 YLQWWYRKTHVEKKTPFIDMINSVPLRQIYGCPLGGIGGGTITRGWRGQFCRWQLNPGMY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD QHRTVIADQFTVCLRREGQTVYQQVLSLERPSVLRSWNWGLCGYFAFYHALYPRAWTVYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 QHRTVIADQFTVCLRREGQTVYQQVLSLERPSVLRSWNWGLCGYFAFYHALYPRAWTVYQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LPGQNVTLTCRQITPILPHDYQDSSLPVGVFVWDVENEGDEALDVSIMFSMRNGLGGGDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 LPGQNVTLTCRQITPILPHDYQDSSLPVGVFVWDVENEGDEALDVSIMFSMRNGLGGGDD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD APGGLWNEPFCLERSGETVRGLLLHHPTLPNPYTMAVAARVTAATTVTHITAFDPDSTGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 APGGLWNEPFCLERSGETVRGLLLHHPTLPNPYTMAVAARVTAATTVTHITAFDPDSTGQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD QVWQDLLQDGQLDSPTGQSTPTQKGVGIAGAVCVSSKLRPRGQCRLEFSLAWDMPRIMFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 QVWQDLLQDGQLDSPTGQSTPTQKGVGIAGAVCVSSKLRPRGQCRLEFSLAWDMPRIMFG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD AKGQVHYRRYTRFFGQDGDAAPALSHYALCRYAEWEERISAWQSPVLDDRSLPAWYKSAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AKGQVHYRRYTRFFGQDGDAAPALSHYALCRYAEWEERISAWQSPVLDDRSLPAWYKSAL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD FNELYFLADGGTVWLEVLEDSLPEELGRNMCHLRPTLRDYGRFGYLEGQEYRMYNTYDVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 FNELYFLADGGTVWLEVLEDSLPEELGRNMCHLRPTLRDYGRFGYLEGQEYRMYNTYDVH
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD FYASFALIMLWPKLELSLQYDMALATLREDLTRRRYLMSGVMAPVKRRNVIPHDIGDPDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 FYASFALIMLWPKLELSLQYDMALATLREDLTRRRYLMSGVMAPVKRRNVIPHDIGDPDD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD EPWLRVNAYLIHDTADWKDLNLKFVLQVYRDYYLTGDQNFLKDMWPVCLAVMESEMKFDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EPWLRVNAYLIHDTADWKDLNLKFVLQVYRDYYLTGDQNFLKDMWPVCLAVMESEMKFDK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD DHDGLIENGGYADQTYDGWVTTGPSAYCGGLWLAAVAVMVQMAALCGAQDIQDKFSSILS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 DHDGLIENGGYADQTYDGWVTTGPSAYCGGLWLAAVAVMVQMAALCGAQDIQDKFSSILS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD RGQEAYERLLWNGRYYNYDSSSRPQSRSVMSDQCAGQWFLKACGLGEGDTEVFPTQHVVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 RGQEAYERLLWNGRYYNYDSSSRPQSRSVMSDQCAGQWFLKACGLGEGDTEVFPTQHVVR
              730       740       750       760       770       780

              790       800       810       820       830          
pF1KSD ALQTIFELNVQAFAGGAMGAVNGMQPHGVPDKSSVQSDEVWVGVVYGLAATMIQELLP-S
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::: :   
CCDS65 ALQTIFELNVQAFAGGAMGAVNGMQPHGVPDKSSVQSDEVWVGVVYGLAATMIQEGLTWE
              790       800       810       820       830       840

     840       850       860       870                             
pF1KSD GFCLWVIVISSTCWELLEGKDSTASIYPVEVALQRVPS                      
       ::                                                          
CCDS65 GFQTAEGCYRTVWERLGLAFQTPEAYCQQRVFRSLAYMRPLSIWAMQLALQQQQHKKASW
              850       860       870       880       890       900




877 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:47:17 2016 done: Thu Nov  3 06:47:18 2016
 Total Scan time:  4.120 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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