Result of FASTA (ccds) for pF1KSDA1589
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1589, 777 aa
  1>>>pF1KSDA1589 777 - 777 aa - 777 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5442+/-0.00103; mu= 10.1047+/- 0.061
 mean_var=135.4673+/-28.709, 0's: 0 Z-trim(107.9): 65  B-trim: 0 in 0/52
 Lambda= 0.110194
 statistics sampled from 9797 (9857) to 9797 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.303), width:  16
 Scan time:  2.560

The best scores are:                                      opt bits E(32554)
CCDS9811.1 ZFYVE1 gene_id:53349|Hs108|chr14        ( 777) 5437 876.5       0
CCDS61498.1 ZFYVE1 gene_id:53349|Hs108|chr14       ( 763) 3467 563.3 5.1e-160
CCDS41969.1 ZFYVE1 gene_id:53349|Hs108|chr14       ( 362) 2631 430.3 2.8e-120


>>CCDS9811.1 ZFYVE1 gene_id:53349|Hs108|chr14             (777 aa)
 initn: 5437 init1: 5437 opt: 5437  Z-score: 4678.8  bits: 876.5 E(32554):    0
Smith-Waterman score: 5437; 100.0% identity (100.0% similar) in 777 aa overlap (1-777:1-777)

               10        20        30        40        50        60
pF1KSD MSAQTSPAEKGLNPGLMCQESYACSGTDEAIFECDECCSLQCLRCEEELHRQERLRNHER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MSAQTSPAEKGLNPGLMCQESYACSGTDEAIFECDECCSLQCLRCEEELHRQERLRNHER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD IRLKPGHVPYCDLCKGLSGHLPGVRQRAIVRCQTCKINLCLECQKRTHSGGNKRRHPVTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 IRLKPGHVPYCDLCKGLSGHLPGVRQRAIVRCQTCKINLCLECQKRTHSGGNKRRHPVTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD YNVSNLQESLEAEEMDEETKRKKMTEKVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 YNVSNLQESLEAEEMDEETKRKKMTEKVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD KVVSIFGNTGDGKSHTLNHTFFYGREVFKTSPTQESCTVGVWAAYDPVHKVAVIDTEGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 KVVSIFGNTGDGKSHTLNHTFFYGREVFKTSPTQESCTVGVWAAYDPVHKVAVIDTEGLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD GATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 GATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RCGLDVPLSTLGPAVIIFHETVHTQLLGSDHPSEVPEKLIQDRFRKLGRFPEAFSSIHYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 RCGLDVPLSTLGPAVIIFHETVHTQLLGSDHPSEVPEKLIQDRFRKLGRFPEAFSSIHYK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD GTRTYNPPTDFSGLRRALEQLLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 GTRTYNPPTDFSGLRRALEQLLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD FFPDEYFTCSSLCLSCGVGCKKSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 FFPDEYFTCSSLCLSCGVGCKKSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD EVSVVPKTSASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 EVSVVPKTSASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD HVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 HVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD ILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 ILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD QLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 QLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILH
              670       680       690       700       710       720

              730       740       750       760       770       
pF1KSD CHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 CHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
              730       740       750       760       770       

>>CCDS61498.1 ZFYVE1 gene_id:53349|Hs108|chr14            (763 aa)
 initn: 3755 init1: 3467 opt: 3467  Z-score: 2986.4  bits: 563.3 E(32554): 5.1e-160
Smith-Waterman score: 5294; 98.2% identity (98.2% similar) in 777 aa overlap (1-777:1-763)

               10        20        30        40        50        60
pF1KSD MSAQTSPAEKGLNPGLMCQESYACSGTDEAIFECDECCSLQCLRCEEELHRQERLRNHER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MSAQTSPAEKGLNPGLMCQESYACSGTDEAIFECDECCSLQCLRCEEELHRQERLRNHER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD IRLKPGHVPYCDLCKGLSGHLPGVRQRAIVRCQTCKINLCLECQKRTHSGGNKRRHPVTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 IRLKPGHVPYCDLCKGLSGHLPGVRQRAIVRCQTCKINLCLECQKRTHSGGNKRRHPVTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD YNVSNLQESLEAEEMDEETKRKKMTEKVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 YNVSNLQESLEAEEMDEETKRKKMTEKVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD KVVSIFGNTGDGKSHTLNHTFFYGREVFKTSPTQESCTVGVWAAYDPVHKVAVIDTEGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 KVVSIFGNTGDGKSHTLNHTFFYGREVFKTSPTQESCTVGVWAAYDPVHKVAVIDTEGLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD GATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 GATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RCGLDVPLSTLGPAVIIFHETVHTQLLGSDHPSEVPEKLIQDRFRKLGRFPEAFSSIHYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 RCGLDVPLSTLGPAVIIFHETVHTQLLGSDHPSEVPEKLIQDRFRKLGRFPEAFSSIHYK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD GTRTYNPPTDFSGLRRALEQLLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 GTRTYNPPTDFSGLRRALEQLLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD FFPDEYFTCSSLCLSCGVGCKKSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 FFPDEYFTCSSLCLSCGVGCKKSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD EVSVVPKTSASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIV
       ::::::::::::::::::::::::::              ::::::::::::::::::::
CCDS61 EVSVVPKTSASTDSPWMGLAKYAWSG--------------RQYWFGNQDPVDTVVRTEIV
              490       500                     510       520      

              550       560       570       580       590       600
pF1KSD HVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 HVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQ
        530       540       550       560       570       580      

              610       620       630       640       650       660
pF1KSD ILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 ILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNV
        590       600       610       620       630       640      

              670       680       690       700       710       720
pF1KSD QLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 QLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILH
        650       660       670       680       690       700      

              730       740       750       760       770       
pF1KSD CHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 CHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
        710       720       730       740       750       760   

>>CCDS41969.1 ZFYVE1 gene_id:53349|Hs108|chr14            (362 aa)
 initn: 2631 init1: 2631 opt: 2631  Z-score: 2272.9  bits: 430.3 E(32554): 2.8e-120
Smith-Waterman score: 2631; 100.0% identity (100.0% similar) in 362 aa overlap (416-777:1-362)

         390       400       410       420       430       440     
pF1KSD TTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSSLCLSCGVGCKKSMN
                                     ::::::::::::::::::::::::::::::
CCDS41                               MAHSSFFPDEYFTCSSLCLSCGVGCKKSMN
                                             10        20        30

         450       460       470       480       490       500     
pF1KSD HGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGEEVSVVPKTSASTDSPWMGLAKYAWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGEEVSVVPKTSASTDSPWMGLAKYAWS
               40        50        60        70        80        90

         510       520       530       540       550       560     
pF1KSD GYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMN
              100       110       120       130       140       150

         570       580       590       600       610       620     
pF1KSD FMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGE
              160       170       180       190       200       210

         630       640       650       660       670       680     
pF1KSD GFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQVDDEGGTLIARKVGEAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQVDDEGGTLIARKVGEAV
              220       230       240       250       260       270

         690       700       710       720       730       740     
pF1KSD QNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFC
              280       290       300       310       320       330

         750       760       770       
pF1KSD DECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
       ::::::::::::::::::::::::::::::::
CCDS41 DECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL
              340       350       360  




777 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:45:49 2016 done: Thu Nov  3 06:45:50 2016
 Total Scan time:  2.560 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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