FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1433, 639 aa
  1>>>pF1KSDA1433 639 - 639 aa - 639 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.5887+/-0.00102; mu= -11.3549+/- 0.061
 mean_var=406.4365+/-84.250, 0's: 0 Z-trim(115.3): 12  B-trim: 143 in 1/54
 Lambda= 0.063618
 statistics sampled from 15875 (15886) to 15875 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.488), width:  16
 Scan time:  4.540

The best scores are:                                      opt bits E(32554)
CCDS845.1 CTTNBP2NL gene_id:55917|Hs108|chr1       ( 639) 4105 390.8 2.9e-108
CCDS5774.1 CTTNBP2 gene_id:83992|Hs108|chr7        (1663)  833 90.8 1.6e-17


>>CCDS845.1 CTTNBP2NL gene_id:55917|Hs108|chr1            (639 aa)
 initn: 4105 init1: 4105 opt: 4105  Z-score: 2057.1  bits: 390.8 E(32554): 2.9e-108
Smith-Waterman score: 4105; 100.0% identity (100.0% similar) in 639 aa overlap (1-639:1-639)

               10        20        30        40        50        60
pF1KSD MNLEKLSKPELLTLFSILEGELEARDLVIEALKAQHRDTFIEERYGKYNISDPLMALQRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MNLEKLSKPELLTLFSILEGELEARDLVIEALKAQHRDTFIEERYGKYNISDPLMALQRD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FETLKEKNDGEKQPVCTNPLSILKVVMKQCKNMQERMLSQLAAAESRHRKVILDLEEERQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 FETLKEKNDGEKQPVCTNPLSILKVVMKQCKNMQERMLSQLAAAESRHRKVILDLEEERQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD RHAQDTAEGDDVTYMLEKERERLTQQLEFEKSQVKKFEKEQKKLSSQLEEERSRHKQLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 RHAQDTAEGDDVTYMLEKERERLTQQLEFEKSQVKKFEKEQKKLSSQLEEERSRHKQLSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD MLVLECKKATNKAAEEGQKAGELSLKLEKEKSRVSKLEEELAAERKRGLQTEAQVEKQLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MLVLECKKATNKAAEEGQKAGELSLKLEKEKSRVSKLEEELAAERKRGLQTEAQVEKQLS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD EFDIEREQLRAKLNREENRTKTLKEEMESLKKIVKDLEASHQHSSPNEQLKKPVTVSKGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 EFDIEREQLRAKLNREENRTKTLKEEMESLKKIVKDLEASHQHSSPNEQLKKPVTVSKGT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD ATEPLMLMSVFCQTESFPAERTHGSNIAKMTNTGLPGPATPAYSYAKTNGHCDPEIQTTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 ATEPLMLMSVFCQTESFPAERTHGSNIAKMTNTGLPGPATPAYSYAKTNGHCDPEIQTTR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD ELTAGNNVENQVPPREKSVALAQEKPVENGGCPVGIETPVPMPSPLSSSGSSLSPSSTAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 ELTAGNNVENQVPPREKSVALAQEKPVENGGCPVGIETPVPMPSPLSSSGSSLSPSSTAS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SSLTSSPCSSPVLTKRLLGSSASSPGYQSSYQVGINQRFHAARHKFQSQADQDQQASGLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 SSLTSSPCSSPVLTKRLLGSSASSPGYQSSYQVGINQRFHAARHKFQSQADQDQQASGLQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD SPPSRDLSPTLIDNSAAKQLARNTVTQVLSRFTSQQGPIKPVSPNSSPFGTDYRNLANTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 SPPSRDLSPTLIDNSAAKQLARNTVTQVLSRFTSQQGPIKPVSPNSSPFGTDYRNLANTA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD NPRGDTSHSPTPGKVSSPLSPLSPGIKSPTIPRAERGNPPPIPPKKPGLTPSPSATTPLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 NPRGDTSHSPTPGKVSSPLSPLSPGIKSPTIPRAERGNPPPIPPKKPGLTPSPSATTPLT
              550       560       570       580       590       600

              610       620       630         
pF1KSD KTHSQAASLTTAEDLASSCSSNTVVANGKDVELLLPTSS
       :::::::::::::::::::::::::::::::::::::::
CCDS84 KTHSQAASLTTAEDLASSCSSNTVVANGKDVELLLPTSS
              610       620       630         

>>CCDS5774.1 CTTNBP2 gene_id:83992|Hs108|chr7             (1663 aa)
 initn: 1263 init1: 464 opt: 833  Z-score: 428.1  bits: 90.8 E(32554): 1.6e-17
Smith-Waterman score: 1314; 40.5% identity (63.9% similar) in 656 aa overlap (2-639:32-607)

                                            10        20        30 
pF1KSD                              MNLEKLSKPELLTLFSILEGELEARDLVIEA
                                     ... ::: ::  :.:..:::::::::::::
CCDS57 ATDGASCEPDLSRAPEDAAGAAAEAAKKEFDVDTLSKSELRMLLSVMEGELEARDLVIEA
              10        20        30        40        50        60 

              40        50        60        70        80        90 
pF1KSD LKAQHRDTFIEERYGKYNISDPLMALQRDFETLKEKNDGEKQPVCTNPLSILKVVMKQCK
       :.:.....::.::::..:..::..:::::.:.    .: ::.::::::::::..:: .::
CCDS57 LRARRKEVFIQERYGRFNLNDPFLALQRDYEA--GAGDKEKKPVCTNPLSILEAVMAHCK
              70        80        90         100       110         

             100       110       120       130       140       150 
pF1KSD NMQERMLSQLAAAESRHRKVILDLEEERQRHAQDTAEGDDVTYMLEKERERLTQQLEFEK
       .::::: .::::::::..:                                    ::.::
CCDS57 KMQERMSAQLAAAESRQKK------------------------------------LEMEK
     120       130                                           140   

             160       170       180       190       200       210 
pF1KSD SQVKKFEKEQKKLSSQLEEERSRHKQLSSMLVLECKKATNKAAEEGQKAGELSLKLEKEK
        :.. .:.:.:::...:::::...::.  ::: :::. ..:. ::.::  ..  :::.::
CCDS57 LQLQALEQEHKKLAARLEEERGKNKQVVLMLVKECKQLSGKVIEEAQKLEDVMAKLEEEK
           150       160       170       180       190       200   

             220       230       240       250       260       270 
pF1KSD SRVSKLEEELAAERKRGLQTEAQVEKQLSEFDIEREQLRAKLNREENRTKTLKEEMESLK
       .....:::::.::..:. . :::.:::::::: ::::::::::::: .:  ::::.....
CCDS57 KKTNELEEELSAEKRRSTEMEAQMEKQLSEFDTEREQLRAKLNREEAHTTDLKEEIDKMR
           210       220       230       240       250       260   

             280       290           300       310       320       
pF1KSD KIVKDLEASHQHSSPNEQLKKPVT----VSKGTATEPLMLMSVFCQTESFPAERTHGSNI
       :....:. . . :.:. .: . .     :: ...::  .  :: :::.    .  : ...
CCDS57 KMIEQLKRGSD-SKPSLSLPRKTKDRRLVSISVGTEGTVTRSVACQTDLVTENADHMKKL
           270        280       290       300       310       320  

       330       340       350           360       370       380   
pF1KSD AKMTNTGLPGPATPAYSYAKTNGHCDPEIQTT----RELTAGNNVENQVPPREKSVALAQ
         .:    :. ..:  :    .. :    ..     :. . :. .  .::      :   
CCDS57 P-LTMPVKPSTGSPLVSANAKGSVCTSATMARPGIDRQASYGDLIGASVPAFPPPSA---
             330       340       350       360       370           

           390       400         410       420       430       440 
pF1KSD EKPVENGGCPVGIETPVPMPS--PLSSSGSSLSPSSTASSSLTSSPCSSPVLTKRLLGSS
       .:  :::  :    :: :  :  :: :...   : .. . ... .  ..: .       :
CCDS57 NKIEENG--PSTGSTPDPTSSTPPLPSNAA---PPTAQTPGIAPQNSQAPPM------HS
      380         390       400          410       420             

             450       460       470        480       490       500
pF1KSD ASSPGYQSSYQVGINQRFHAARHKFQSQA-DQDQQASGLQSPPSRDLSPTLIDNSAAKQL
         ::  ..: . :.: :..::: .::..: : ::...  :::::::.:::  :: .::::
CCDS57 LHSPCANTSLHPGLNPRIQAARFRFQGNANDPDQNGNTTQSPPSRDVSPTSRDNLVAKQL
       430       440       450       460       470       480       

              510         520       530       540       550        
pF1KSD ARNTVTQVLSRFTSQQG--PIKPVSPNSSPFGTDYRNLANTANPRGDTSHSPTPGKVSSP
       :::::::.:::::: :.  : .:  :                 : ::..  :  :..:  
CCDS57 ARNTVTQALSRFTSPQAGAPSRPGVP-----------------PTGDVGTHPPVGRTS--
       490       500       510                        520          

      560       570       580       590       600         610      
pF1KSD LSPLSPGIKSPTIPRAERGNPPPIPPKKPGLTPSPSATTPLTKT--HSQAASLTTAE-DL
              .:.  . :..::::::::::::::. .::   :  :.   :. :: : :. : 
CCDS57 -------LKTHGVARVDRGNPPPIPPKKPGLSQTPSPPHPQLKVIIDSSRASNTGAKVDN
             530       540       550       560       570       580 

         620       630                                             
pF1KSD ASSCSSNTVVANGKDV--ELLLPTSS                                  
        .  :. . . .:. :  :  :: ::                                  
CCDS57 KTVASTPSSLPQGNRVINEENLPKSSSPQLPPKPSIDLTVAPAGCAVSALATSQVGAWPA
             590       600       610       620       630       640 




639 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:14:41 2016 done: Thu Nov  3 06:14:42 2016
 Total Scan time:  4.540 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]