Result of FASTA (ccds) for pF1KSDA1337
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1337, 1392 aa
  1>>>pF1KSDA1337 1392 - 1392 aa - 1392 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5421+/-0.000879; mu= 23.1404+/- 0.053
 mean_var=85.2373+/-17.004, 0's: 0 Z-trim(107.8): 19  B-trim: 30 in 1/50
 Lambda= 0.138918
 statistics sampled from 9812 (9824) to 9812 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.302), width:  16
 Scan time:  5.860

The best scores are:                                      opt bits E(32554)
CCDS41247.1 DISP3 gene_id:57540|Hs108|chr1         (1392) 9368 1888.3       0


>>CCDS41247.1 DISP3 gene_id:57540|Hs108|chr1              (1392 aa)
 initn: 9368 init1: 9368 opt: 9368  Z-score: 10137.7  bits: 1888.3 E(32554):    0
Smith-Waterman score: 9368; 99.9% identity (100.0% similar) in 1392 aa overlap (1-1392:1-1392)

               10        20        30        40        50        60
pF1KSD MDTEDDPLLQDVWLEEEQEEEEATGETFLGAQKPGPQPGAGGQCCWRHWPLASRPPASGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MDTEDDPLLQDVWLEEEQEEEEATGETFLGAQKPGPQPGAGGQCCWRHWPLASRPPASGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD WSTLGWAFTNPCCAGLVLFLGCSIPMALSAFMFLYYPPLDIDISYNAFEIRNHEASQRFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WSTLGWAFTNPCCAGLVLFLGCSIPMALSAFMFLYYPPLDIDISYNAFEIRNHEASQRFD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ALTLALKSQFGSWGRNRRDLADFTSETLQRLISEQLQQLHLGNRSRQASRAPRVIPAASL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ALTLALKSQFGSWGRNRRDLADFTSETLQRLISEQLQQLHLGNRSRQASRAPRVIPAASL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GSPGPYRDTSAAQKPTANRSGRLRRETPPLEDLAANQSEDPRNQRLSKNGRYQPSIPPHA
       :.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GGPGPYRDTSAAQKPTANRSGRLRRETPPLEDLAANQSEDPRNQRLSKNGRYQPSIPPHA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD AVAANQSRARRGASRWDYSRAYVSANTQTHAHWRIELIFLARGDAERNIFTSERLVTIHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AVAANQSRARRGASRWDYSRAYVSANTQTHAHWRIELIFLARGDAERNIFTSERLVTIHE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD IERKIMDHPGFREFCWKPHEVLKDLPLGSYSYCSPPSSLMTYFFPTERGGKIYYDGMGQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IERKIMDHPGFREFCWKPHEVLKDLPLGSYSYCSPPSSLMTYFFPTERGGKIYYDGMGQD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD LADIRGSLELAMTHPEFYWYVDEGLSADNLKSSLLRSEILFGAPLPNYYSVDDRWEEQRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LADIRGSLELAMTHPEFYWYVDEGLSADNLKSSLLRSEILFGAPLPNYYSVDDRWEEQRA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD KFQSFVVTYVAMLAKQSTSKVQVLYGGTDLFDYEVRRTFNNDMLLAFISSSCIAALVYIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KFQSFVVTYVAMLAKQSTSKVQVLYGGTDLFDYEVRRTFNNDMLLAFISSSCIAALVYIL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD TSCSVFLSFFGIASIGLSCLVALFLYHVVFGIQYLGILNGVAAFVIVGIGVDDVFVFINT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TSCSVFLSFFGIASIGLSCLVALFLYHVVFGIQYLGILNGVAAFVIVGIGVDDVFVFINT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD YRQATHLEDPQLRMIHTVQTAGKATFFTSLTTAAAYAANVFSQIPAVHDFGLFMSLIVSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YRQATHLEDPQLRMIHTVQTAGKATFFTSLTTAAAYAANVFSQIPAVHDFGLFMSLIVSC
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD CWLAVLVTMPAALGLWSLYLAPLESSCQTSCHQNCSRKTSLHFPGDVFATPEQVGGSPAQ
       :::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
CCDS41 CWLAVLVTMPAALGLWSLYLAPLESSCQTSCHQNCSRKTSLHFPGDVFAAPEQVGGSPAQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD GPIPYLDDDIPLLEVEEEPVSLELGDVSLVSVSPEGLQPASNTGSRGHLIVQLQELLHHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GPIPYLDDDIPLLEVEEEPVSLELGDVSLVSVSPEGLQPASNTGSRGHLIVQLQELLHHW
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD VLWSAVKSRWVIVGLFVSILILSLVFASRLRPASRAPLLFRPDTNIQVLLDLKYNLSAEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VLWSAVKSRWVIVGLFVSILILSLVFASRLRPASRAPLLFRPDTNIQVLLDLKYNLSAEG
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ISCITCSGLFQEKPHSLQNNIRTSLEKKRRGSGVPWASRPEATLQDFPGTVYISKVKSQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ISCITCSGLFQEKPHSLQNNIRTSLEKKRRGSGVPWASRPEATLQDFPGTVYISKVKSQG
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD HPAVYRLSLNASLPAPWQAVSPGDGEVPSFQVYRAPFGNFTKKLTACMSTVGLLQAASPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HPAVYRLSLNASLPAPWQAVSPGDGEVPSFQVYRAPFGNFTKKLTACMSTVGLLQAASPS
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD RKWMLTTLACDAKRGWKFDFSFYVATKEQQHTRKLYFAQSHKPPFHGRVCMAPPGCLLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RKWMLTTLACDAKRGWKFDFSFYVATKEQQHTRKLYFAQSHKPPFHGRVCMAPPGCLLSS
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD SPDGPTKGFFFVPSEKVPKARLSATFGFNPCVNTGCGKPAVRPLVDTGAMVFVVFGIIGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SPDGPTKGFFFVPSEKVPKARLSATFGFNPCVNTGCGKPAVRPLVDTGAMVFVVFGIIGV
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD NRTRQVDNHVIGDPGSVVYDSSFDLFKEIGHLCHLCKAIAANSELVKPGGAQCLPSGYSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NRTRQVDNHVIGDPGSVVYDSSFDLFKEIGHLCHLCKAIAANSELVKPGGAQCLPSGYSI
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KSD SSFLQMLHPECKELPEPNLLPGQLSHGAVGVREGRVQWISMAFESTTYKGKSSFQTYSDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SSFLQMLHPECKELPEPNLLPGQLSHGAVGVREGRVQWISMAFESTTYKGKSSFQTYSDY
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KSD LRWESFLQQQLQALPEGSVLRRGFQTCEHWKQIFMEIVGVQSALCGLVLSLLICVAAVAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LRWESFLQQQLQALPEGSVLRRGFQTCEHWKQIFMEIVGVQSALCGLVLSLLICVAAVAV
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KSD FTTHILLLLPVLLSILGIVCLVVTIMYWSGWEMGAVEAISLSILVGSSVDYCVHLVEGYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FTTHILLLLPVLLSILGIVCLVVTIMYWSGWEMGAVEAISLSILVGSSVDYCVHLVEGYL
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KSD LAGENLPPHQAEDARTQRQWRTLEAVRHVGVAIVSSALTTVIATVPLFFCIIAPFAKFGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LAGENLPPHQAEDARTQRQWRTLEAVRHVGVAIVSSALTTVIATVPLFFCIIAPFAKFGK
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KSD IVALNTGVSILYTLTVSTALLGIMAPSSFTRTRTSFLKALGAVLLAGALGLGACLVLLQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IVALNTGVSILYTLTVSTALLGIMAPSSFTRTRTSFLKALGAVLLAGALGLGACLVLLQS
             1330      1340      1350      1360      1370      1380

             1390  
pF1KSD GYKIPLPAGASL
       ::::::::::::
CCDS41 GYKIPLPAGASL
             1390  




1392 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:52:35 2016 done: Thu Nov  3 05:52:36 2016
 Total Scan time:  5.860 Total Display time:  0.090

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com