GENSCAN 1.0	Date run:  3-Nov-116	Time: 05:44:35

Sequence gi568815588f:68888833_69116413 : 227581 bp : 43.24% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  12508  12639  132  0  0  112   91    76 0.094  11.14
 1.02 Intr +  17879  18175  297  1  0  103   64   212 0.994  17.37
 1.03 Intr +  21475  21550   76  0  1   62   91    40 0.693   0.79
 1.04 Intr +  22269  22414  146  1  2   41   84    45 0.326  -0.60
 1.05 Intr +  24330  24447  118  2  1   55   87    55 0.878   2.14
 1.06 Intr +  24559  24744  186  2  0   67   36   222 0.503  14.56
 1.07 Intr +  25227  25372  146  1  2   47  100    10 0.449  -1.90
 1.08 Intr +  31000  31149  150  0  0   65  111    48 0.490   5.16
 1.09 Intr +  45367  45528  162  0  0  101   91    99 0.993  11.67
 1.10 Intr +  47174  47247   74  1  2  110   85    43 0.966   4.40
 1.11 Intr +  57520  57822  303  1  0   78   39   187 0.091   8.51
 1.12 Intr +  67162  67480  319  1  1   90   52   126 0.728   5.16
 1.13 Intr +  70974  71417  444  2  0   50   88   441 0.863  33.90
 1.14 Intr +  76545  76662  118  2  1   85   82    58 0.887   4.94
 1.15 Intr +  78186  78371  186  1  0   56   84   253 0.982  21.36
 1.16 Intr +  80144  80289  146  0  2   91   84    40 0.999   3.90
 1.17 Intr +  81369  81518  150  2  0   13   77   122 0.774   3.96
 1.18 Intr +  83059  83220  162  0  0   61   95    36 0.766   1.77
 1.19 Intr +  85838  85911   74  1  2   81   91    33 0.993   1.10
 1.20 Intr +  88697  88856  160  2  1   23   79   159 0.770   8.49
 1.21 Intr +  90010  90144  135  0  0   69   95    70 0.930   6.56
 1.22 Intr +  93757  93921  165  0  0   76   26   230 0.263  15.76
 1.23 Intr +  99721  99919  199  0  1   78   97    98 0.270   8.62
 1.24 Intr + 100023 100426  404  1  2   34   94   692 0.268  58.55
 1.25 Intr + 111592 111690   99  0  0  114   87    -4 0.315   2.41
 1.26 Intr + 116214 116293   80  2  2   70  113    64 0.998   5.45
 1.27 Intr + 116900 117083  184  2  1   97  121   102 0.998  14.19
 1.28 Intr + 126709 127527  819  0  0  137   49   581 0.072  50.72
 1.29 Intr + 134138 134394  257  1  2   -1   41   458 0.010  28.44
 1.30 Term + 134597 134915  319  2  1  -20   48   414 0.956  20.95
 1.31 PlyA + 136058 136063    6                               1.05

 2.05 PlyA - 137582 137577    6                               1.05
 2.04 Term - 173159 172886  274  1  1   32   40   217 0.805   6.24
 2.03 Intr - 173343 173310   34  1  1   86   88    46 0.499   1.68
 2.02 Intr - 180853 180700  154  1  1   58   55    87 0.325   2.05
 2.01 Init - 182872 182831   42  1  0   57   64    52 0.358   0.12
 2.00 Prom - 185548 185509   40                              -3.16

 3.00 Prom + 194791 194830   40                              -7.46
 3.01 Init + 199329 199404   76  2  1   80  116   130 0.801  14.25
 3.02 Intr + 208252 208399  148  2  1   53   94    60 0.302   2.39
 3.03 Intr + 215039 215212  174  2  0   72  -12   162 0.024   3.65
 3.04 Intr + 221895 222039  145  0  1   -3   74   114 0.013   1.18
 3.05 Intr + 223609 223716  108  0  0   75   32    90 0.414   2.58
 3.06 Intr + 225832 225961  130  0  1   74   39    84 0.590   2.37
 3.07 Intr + 226000 226137  138  2  0  -18   18   220 0.413   4.84
 3.08 Term + 226522 226727  206  2  2   31   39   169 0.484   3.83
 3.09 PlyA + 226850 226855    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 126709 127584  876  0  0  137   36   563 0.928  48.58
S.002 Init + 134144 134394  251  1  2   72   41   453 0.873  35.94
S.003 Init + 167268 167309   42  2  0   77   98    47 0.855   5.02
S.004 Term + 215039 215288  250  2  1   72   42   170 0.959   5.98
S.005 Init + 221974 222039   66  0  0   63   74    67 0.810   3.87


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588f:68888833_69116413|GENSCAN_predicted_peptide_1|2069_aa
VVVATVPGGRRRWPVMPGKLLWGDIMELEAPLEESESQKKERQKSDRRKSRHHYDSDEKS
ETRENGVTDDLDAPKAKKSKMKEKLNGDTEEGFNRLSDEFSKSHKSRRKDLPNGDIDEYE
KKSKRVSSLDTSTHKSSDNKLEETLTREQKEGAFSNFPISEETIKLLKVKTFGPVYEGKD
LIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITR
KLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQML
DLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQ
KAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ
CLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQGITFKRVGV
PSTMDLVKSKSMDAIRQSGMIPTGYSQCQPNYLKLKNIMMETHLLIPDRGVAGQVVDQAG
QAGQVVDLAAGQVDRVDKEVAQEVDKMVEDEVGIEIDQEVGATNGVLTEYLIVNLPVCLL
DQGPQVVNSLNPTTVTGRCFEFTTRKAAFPVLPASPGSALLREVTRAGWTQGGELPLPLH
AVEKTGRPGQPALKMPGKLRSDAGLESDTAMKKGETLRKQTEEKEKKEKPKSDKTEEIAE
EEETVFPKAKQVKKKAEPSEVDMNSPKSKKAKKKEEPSQNDISPKTKSLRKKKEPIEKKV
VSSKTKKVTKNEEPSEEEIDAPKPKKMKKEKEMNGETREKSPKLKNGFPHPEPDCNPSEA
ASEESNSEIEQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRNGIDI
LVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQT
LLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVI
RVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVL
VATNVAARGLDIPEVDLVIQSSPPKGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAI
SHFKQSAEKLIEEKGAVEALAAALAHISGATSVDQRSLINSNVGFVTMILQCSIEMPNIS
YAWKELKEQLGEEIDSKVKGMVFLKGKLSNQNWKDHGKDMEASGDSGKAVEASGDSGTET
EDSEDSGKAVEAREDSDQEVATKGQSGDKLTAAGGGEGGGNTLIDNFISMRMVAVVIAAS
SHWSLPSVLRFSGRVILVPIPQRPQRVESQVCEKFQAALALSRVELHKNPEKEPYKSKYS
ARALLEEVKALLGPAPEDEDERPEAEDGPGAGDHALGLPAEVVEPEGPVAQRAVRLAVIE
FHLGVNHIDTEELSAGEEHLVKCLRLLRRYRLSHDCISLCIQAQNNLGILWSEREEIETA
QAYLESSEALYNQYMKEVGSPPLDPTERFLPEEEKLTEQERSKRFEKVYTHNLYYLAQVY
QHLEMFEKAAHYCHSTLKRQLEHNAYHPIEWAINAATLSQFYINKDNIGELDLDKQSELR
ALRKKELDEEESIRKKAVQFGTGELCDAISAVEEKVSYLRPLDFEEARELFLLGQHYVFE
AKEFFQIDGYVTDHIEVVQDHSALFKVLAFFETDMERRCKMHKRRIAMLEPLTVDLNPQY
YLLVNRQIQFEIAHAYYDMMDLKVAIADRLRDPDSHIVKKINNLNKSALKYYQLFLDSLR
DPNKVFPEHIGEDVLRPAMLAKFRVARLYGKIITADPKKELENLATSLEHYKFIVDYCEK
HPEAAQEIEVELELSKEMHGMVIYWDDMEKIWHHTFYNELHVAFEEYPVLLTKGPLNPKA
NHEKMAQIMLETFNTPPMHVAIQVVLYLYSSGHTTGIVMDSGDRRWPHGSSWEKSYELSD
GQVITSSNKRFHCPEALFQPSFLGMESCGIYKTTFKSIVKCDVDIHKDLYANTVLSGSTT
MYPGIALQDAEGDHCPGSQHEEDQDHCSF

>gi568815588f:68888833_69116413|GENSCAN_predicted_CDS_1|6210_bp
gtggttgtggccactgtgcccggagggaggcggcggtggccagtaatgcctgggaaactc
ctctggggggacattatggagctggaagcacccttggaggagtccgagagccagaagaag
gagaggcaaaagagtgacagaaggaagtcaaggcaccattatgactcggatgagaaatca
gaaacaagagaaaatggtgttacagatgacctggatgctcccaaggccaaaaaatctaaa
atgaaagagaagctaaatggagacactgaagaaggatttaatagactttcagatgaattc
tccaaatctcataagtcaagaagaaaagatctaccaaatggagatatagatgaatatgaa
aaaaaatcaaagcgagtatcatctttagatacttctactcataaatcaagtgataataaa
ctagaggagaccttaacacgtgaacagaaagaaggagccttctccaattttcctatttct
gaagagactataaagcttctgaaagttaagacctttggtcctgtatatgaaggaaaagat
ttaatagctcaagcacggacaggaacaggaaagacattctcttttgccatccccttaatt
gaaagactccaaagaaatcaagaaacaattaaaaaaagccgctcaccaaaggtacttgtt
ttggctccaacaagggaactggcaaaccaagtagccaaagacttcaaagatataactagg
aaactcagcgtggcgtgtttttatggtggaacatcatatcaaagccaaattaatcatatt
cgaaatggtattgacatcttggttggaacacctggtcgtatcaaagaccatctgcagagt
ggccgattggatctttctaaactgcgacatgttgtgcttgatgaagtggatcagatgtta
gatttaggtttcgctgaacaagttgaagatattattcatgaatcctacaaaactgattct
gaagacaatcctcagactttacttttttctgcaacttgcccacagtgggtatacaaagtt
gcaaaaaaatacatgaaatccagatatgaacaggttgaccttgttggaaaaatgactcaa
aaggctgcaactactgtggaacatttggccatccagtgtcattggtctcagaggccagca
gttattggagatgtccttcaagtctacagtgggtctgaagggagggctattattttctgt
gagaccaagaagaatgtaactgaaatggccatgaatccacacataaaacagaatgcccag
tgtttacatggggacattgcacagtcacaaagagaaattacactaaaaggcttcagagaa
ggtagttttaaagttttggtggcaaccaatgtggctgcccgtggtttggacattcctgaa
gttgacctggtgattcaaagttctcctcctcagggaattacttttaaacgtgtaggtgtt
ccttctacaatggatttagttaaatctaaaagcatggatgccatcaggcagagtggcatg
attccgactggatactctcagtgccagccaaattacctgaaattgaagaatattatgatg
gaaacacatcttctaattccagacagaggagtggctggtcaagtggtcgatcaggccggt
caggccggtcaggtggtcgatctggcggccggtcaggtagacagagtcgacaaggaagtc
gctcaggaagtcgacaagatggtagaagacgaagtgggaatagaaatcgatcaagaagtg
ggggccacaaacggagttttgactgagtatttgatagttaatctaccagtgtgccttcta
gaccaagggccgcaagtggtcaattcactaaatccaaccacagtcacaggccgctgcttt
gaatttaccacgcggaaagcagcttttcctgtgcttcctgcttcccccggaagtgccttg
ctacgggaagtgacgagagccgggtggacccagggtggggaactacctcttcctctccac
gcggttgagaagaccggtcggcctgggcaacctgcgctgaagatgccgggaaaactccgt
agtgacgctggtttggaatcagacaccgcaatgaaaaaaggggagacactgcgaaagcaa
accgaggagaaagagaaaaaagagaagccaaaatctgataagactgaagagatagcagaa
gaggaagaaactgttttccccaaagctaaacaagttaaaaagaaagcagagccttctgaa
gttgacatgaattctcctaaatccaaaaaggcaaaaaagaaagaggagccatctcaaaat
gacatttctcctaaaaccaaaagtttgagaaagaaaaaggagcccattgaaaagaaagtg
gtttcttctaaaaccaaaaaagtgacaaaaaatgaggagccttctgaggaagaaatagat
gctcctaagcccaagaagatgaagaaagaaaaggaaatgaatggagaaactagagagaaa
agccccaaactgaagaatggatttcctcatcctgaaccggactgtaaccccagtgaagct
gccagtgaagaaagtaacagtgagatagagcaggtactggttcttgcacctacaagagag
ttggcaaatcaagtaagcaaagacttcagtgacatcacaaaaaagctgtcagtggcttgt
ttttatggtggaactccctatggaggtcaatttgaacgcatgaggaatgggattgatatc
ctggttggaacaccaggtcgtatcaaagaccacatacagaatggcaaactagatctcacc
aaacttaagcatgttgtcctggatgaagtggaccagatgttggatatgggatttgctgat
caagtggaagagattttaagtgtggcatacaagaaagattctgaagacaatccccaaaca
ttgcttttttctgcaacttgccctcattgggtatttaatgttgccaagaaatacatgaaa
tctacatatgaacaggtggacctgattggtaaaaagactcagaaaacggcaataactgtg
gagcatctggctattaagtgccactggactcagagggcagcagttattggggatgtcatc
cgagtatatagtggtcatcaaggacgcactatcatcttttgtgaaaccaagaaagaagcc
caggagctgtcccagaattcagctataaagcaggatgctcagtccttgcatggagacatt
ccacagaagcaaagggaaatcaccctgaaaggttttagaaatggtagttttggagttttg
gtggcaaccaatgttgctgcacgtgggttagacatccctgaggttgatttggttatacaa
agctctccaccaaagggaattaagttcaaacgaataggtgttccttctgcaacagaaata
ataaaagcttccagcaaagatgccatcaggcttttggattccgtgcctcccactgccatt
agtcacttcaaacaatcagctgagaagctgatagaggagaagggagctgtggaagctctg
gcagcagcactggcccatatttcaggtgccacgtccgtagaccagcgctccttgatcaac
tcaaatgtgggttttgtgaccatgatcttgcagtgctcaattgaaatgccaaatattagt
tatgcttggaaagaacttaaagagcagctgggcgaggagattgattccaaagtgaaggga
atggtttttctcaaaggaaagctgagcaaccagaactggaaggaccacgggaaggatatg
gaggcttcaggggacagcgggaaggcagtcgaggcttcaggggacagcgggacggaaaca
gaagattcagaggacagcgggaaggcagtagaggcccgagaggacagcgatcaggaggtg
gcaacaaaaggtcaatctggagataaactcaccgctgcagggggcggggaaggaggtggg
aacacgctcattgacaacttcatttccatgagaatggttgctgtggtgattgctgcgtct
tcccattggtcattgccgagcgtattgcggttctccgggagggttatattggttcccatt
ccacagcggccgcaacgtgtcgagagccaggtctgcgagaaattccaggcggcgctcgct
ctgtcgcgggtggaactgcataaaaatccggagaaggaaccatacaagtccaaatacagc
gcccgggcgctactggaagaggtcaaggcgctgctcggccctgcgcctgaggacgaggat
gagcggcctgaggccgaggacggcccgggtgccggtgaccacgccctggggctgccggct
gaggtggtggagcccgaggggcccgtcgcccagcgagcggtgaggctggcagtcatcgag
ttccacctcggggtgaaccacatcgacacggaggagctgtcggcgggggaggagcacctg
gtgaaatgcctgcggctgctgcgcaggtaccggctctcgcacgactgcatctctctctgc
atccaggcgcagaataacctgggtatcttgtggtctgaaagagaagaaattgaaactgca
caggcttacctagagtcatcagaagcactatataatcagtatatgaaagaggttgggagt
cctcctcttgatcctactgagcgttttcttcctgaagaagagaaacttactgaacaagag
agatcaaaaagatttgaaaaggtttatactcataacctatattacctagctcaagtctac
cagcatctggaaatgtttgagaaggctgctcactattgccatagtacactaaaacgccag
cttgagcacaatgcctaccatcctatagagtgggctatcaatgctgctaccttgtcacag
ttttacatcaataaggacaacataggagagcttgatcttgataaacagtctgaacttaga
gctttaaggaaaaaagaactagatgaggaggaaagcattcggaaaaaagctgtgcagttt
ggaaccggtgaactgtgtgatgccatctctgcagtagaagagaaagtgagctacttgaga
cctttagattttgaagaagccagagaacttttcttattgggtcagcactatgtctttgag
gcaaaagagttctttcagattgatggttatgtcactgaccatattgaagttgtccaagac
cacagtgctctgtttaaggtgcttgcattctttgaaactgacatggagagacggtgcaag
atgcataaacgcagaatagccatgctagagcccctaactgtagacctgaatccacagtat
tatctgttggtcaacagacagatccagtttgaaattgcacatgcttactatgatatgatg
gatttgaaggttgccattgctgacaggctaagggatcctgattcacacattgtaaaaaaa
ataaataatcttaataagtcagcactgaagtactaccagctcttcttagactccctgaga
gacccaaataaagtattccctgagcatataggggaagatgttcttcgccctgccatgtta
gctaagtttcgagttgcccgtctctatggcaaaatcattactgcagatcccaagaaagag
ctggaaaatttggcaacatcattggaacattacaaatttattgttgattactgtgaaaag
catcctgaggccgcccaggaaatagaagttgagctagaacttagtaaagagatgcacggc
atggtcatctactgggatgacatggagaagatctggcaccacaccttctacaatgagctg
catgtggctttcgaggagtaccctgtgctgctgaccaaaggccccctgaatcccaaggcc
aaccatgagaagatggcccagattatgttggagaccttcaacaccccacccatgcacgtg
gccatccaggtcgtgctgtacctgtactcctctggccataccactggcatcgtgatggac
tctggcgacaggagatggccccacgggtcctcctgggagaagagctatgagctgtcagat
ggccaggtcatcaccagcagcaacaagcggttccactgccccgaggcgctcttccagcct
tctttcctgggcatggaatcctgtggcatctacaaaactaccttcaaatccatcgtgaag
tgtgacgtggacatccacaaagacctgtacgccaacacagtgctatctggcagcaccacc
atgtaccctggcatcgctctgcaggatgcagagggggatcactgccctggctcccagcat
gaggaggatcaagatcattgctccttctga

>gi568815588f:68888833_69116413|GENSCAN_predicted_peptide_2|167_aa
MRENVLISTFPSPQAGETGIKATHCLGPMSPGCPNPFATLGHLRPVLVRGCQHVTSSRPG
LSDLQVLKVFGKKNKWRRSSRPSDLVGISSDLQKLLVWWAPDTWCFCCLGAAEDPEPCLS
STLTEAAKYRKYTRSKGKHALQRRPLITIVYVGSNGTEFAARVFFLS

>gi568815588f:68888833_69116413|GENSCAN_predicted_CDS_2|504_bp
atgcgagagaacgtgctgatcagtacttttccatctccacaggcaggggagacaggaatc
aaggccactcactgcctgggcccaatgtcccctggatgtcccaacccttttgctaccctg
ggccatctacgaccagttctggtgcgaggatgccagcatgtaacctccagtaggccaggg
ctgtcggatctccaggtgctaaaagtttttggcaagaaaaacaagtggaggaggagcagc
cgcccgtcagacctggtggggatcagcagtgacctgcagaagttgctggtgtggtgggca
ccggatacctggtgtttctgctgcctcggtgctgctgaggacccagagccctgcctgagc
agcacgctcacagaggcagcgaagtacaggaagtacacaaggtcaaaaggaaaacacgct
ctccagagacgtcctctgatcactatcgtgtacgttgggtcgaatggaacagaatttgct
gctagagtgtttttcctctcctaa

>gi568815588f:68888833_69116413|GENSCAN_predicted_peptide_3|374_aa
MQKLLKCSRLVLALALILVLESSVQGYPTRRARYQWVRCNPDSNSANCLEEKGPMFELLP
GESNKIPRLRTDLFPKTRIQDLNRIFPLSEDYSGSGFGSGSGSGSGSGSGFLTEMEQDYQ
LVDESDAFHDNLRKIGRLGTKQLRVKACGWTNERRQSVKMYVSNVNAHQKTSITEEALNN
QERLADGCKFLDAESQFIQGHAPFSWTAHSQRLIYVGTTEIMLRQKQIQAIFLFEFKTGL
KAAETTRNINNPFGAGIANKHESLEDEKRSGRPWEFDNDQLRAIIEADPLTTTQEVAEKL
NIDHSTAGIGPQKGPVLLHKNAQVQVVEPMLQKLNELGYEVLPHPPYLPDFLPTDYHSFK
HLGNFLQGKRFHNQ

>gi568815588f:68888833_69116413|GENSCAN_predicted_CDS_3|1125_bp
atgcagaagctactcaaatgcagtcggcttgtcctggctcttgccctcatcctggttctg
gaatcctcagttcaaggttatcctacgcggagagccaggtaccaatgggtgcgctgcaat
ccagacagtaattctgcaaactgccttgaagaaaaaggaccaatgttcgaactacttcca
ggtgaatccaacaagatcccccgtctgaggactgacctttttccaaagacgagaatccag
gacttgaatcgtatcttcccactttctgaggactactctggatcaggcttcggctccggc
tccggctctggatcaggatctgggagtggcttcctaacggaaatggaacaggattaccaa
ctagtagacgaaagtgatgctttccatgacaaccttagaaagattggaagattgggcacg
aagcagctcagggtaaaggcatgtggatggaccaatgagagaagacaaagtgtgaagatg
tacgtatcaaatgtgaatgcccaccagaaaacatccatcacagaagaggcactaaacaac
caggaaaggttggctgacggctgcaagttcttagatgcagagagccagttcatccaaggt
catgctcccttctcatggacagctcacagtcaaagactcatctatgtggggactacggaa
ataatgttaagacaaaagcaaattcaagctattttcttattcgagttcaaaacaggtctt
aaagcagcagagacaactcgcaacatcaacaacccatttggcgcaggaattgctaacaaa
catgagagccttgaagatgagaagcgtagtggccggccatgggaatttgacaatgaccaa
ttgagagcaatcattgaagctgatcctcttacaactacacaagaagttgctgaaaaactc
aacatcgaccattctacagccggcataggtccacagaaaggcccagttctgctccataag
aacgcccaagtgcaggtcgtagaaccaatgcttcaaaagttgaatgaattgggctacgaa
gttttgcctcatccgccatatttacctgacttcttgccaactgactaccactccttcaag
catctcggcaactttttgcagggaaaacgcttccacaaccagtag