Result of FASTA (ccds) for pF1KSDA1197
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1197, 1422 aa
  1>>>pF1KSDA1197 1422 - 1422 aa - 1422 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.6949+/-0.00124; mu= 0.8008+/- 0.075
 mean_var=406.1749+/-83.413, 0's: 0 Z-trim(111.7): 63  B-trim: 0 in 0/54
 Lambda= 0.063638
 statistics sampled from 12592 (12623) to 12592 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.388), width:  16
 Scan time:  5.580

The best scores are:                                      opt bits E(32554)
CCDS43175.1 YEATS2 gene_id:55689|Hs108|chr3        (1422) 9260 866.1       0


>>CCDS43175.1 YEATS2 gene_id:55689|Hs108|chr3             (1422 aa)
 initn: 9260 init1: 9260 opt: 9260  Z-score: 4613.1  bits: 866.1 E(32554):    0
Smith-Waterman score: 9260; 100.0% identity (100.0% similar) in 1422 aa overlap (1-1422:1-1422)

               10        20        30        40        50        60
pF1KSD MSGIKRTIKETDPDYEDVSVALPNKRHKAIENSARDAAVQKIETIIKEQFALEMKNKEHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MSGIKRTIKETDPDYEDVSVALPNKRHKAIENSARDAAVQKIETIIKEQFALEMKNKEHE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD IEVIDQRLIEARRMMDKLRACIVANYYASAGLLKVSEGSKTCDTMVFNHPAIKKFLESPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IEVIDQRLIEARRMMDKLRACIVANYYASAGLLKVSEGSKTCDTMVFNHPAIKKFLESPS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD RSSSPANQRAETPSANHSESDSLSQHNDFLSDKDNNSNMDIEERLSNNMEQRPSRNTGRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RSSSPANQRAETPSANHSESDSLSQHNDFLSDKDNNSNMDIEERLSNNMEQRPSRNTGRD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD TSRITGSHKTEQRNADLTDETSRLFVKKTIVVGNVSKYIPPDKREENDQSTHKWMVYVRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TSRITGSHKTEQRNADLTDETSRLFVKKTIVVGNVSKYIPPDKREENDQSTHKWMVYVRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SRREPSINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPVRVQVHFKDSQNKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SRREPSINHFVKKVWFFLHPSYKPNDLVEVREPPFHLTRRGWGEFPVRVQVHFKDSQNKR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD IDIIHNLKLDRTYTGLQTLGAETVVDVELHRHSLGEDCIYPQSSESDISDAPPSLPLTIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IDIIHNLKLDRTYTGLQTLGAETVVDVELHRHSLGEDCIYPQSSESDISDAPPSLPLTIP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD APVKASSPIKQSHEPVPDTSVEKGFPASTEAERHTPFYALPSSLERTPTKMTTSQKVTFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 APVKASSPIKQSHEPVPDTSVEKGFPASTEAERHTPFYALPSSLERTPTKMTTSQKVTFC
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SHGNSAFQPIASSCKIVPQSQVPNPESPGKSFQPITMSCKIVSGSPISTPSPSPLPRTPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SHGNSAFQPIASSCKIVPQSQVPNPESPGKSFQPITMSCKIVSGSPISTPSPSPLPRTPT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD STPVHVKQGTAGSVINNPYVIMDKQPGQVIGATTPSTGSPTNKISTASQVSQGTGSPVPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 STPVHVKQGTAGSVINNPYVIMDKQPGQVIGATTPSTGSPTNKISTASQVSQGTGSPVPK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD IHGSSFVTSTVKQEDSLFASMPPLCPIGSHPKVQSPKPITGGLGAFTKVIIKQEPGEAPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IHGSSFVTSTVKQEDSLFASMPPLCPIGSHPKVQSPKPITGGLGAFTKVIIKQEPGEAPH
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD VPATGAASQSPLPQYVTVKGGHMIAVSPQKQVITPGEGIAQSAKVQPSKVVGVPVGSALP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VPATGAASQSPLPQYVTVKGGHMIAVSPQKQVITPGEGIAQSAKVQPSKVVGVPVGSALP
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD STVKQAVAISGGQILVAKASSSVSKAVGPKQVVTQGVAKAIVSGGGGTIVAQPVQTLTKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 STVKQAVAISGGQILVAKASSSVSKAVGPKQVVTQGVAKAIVSGGGGTIVAQPVQTLTKA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD QVTAAGPQKSGSQGSVMATLQLPATNLANLANLPPGTKLYLTTNSKNPSGKGKLLLIPQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QVTAAGPQKSGSQGSVMATLQLPATNLANLANLPPGTKLYLTTNSKNPSGKGKLLLIPQG
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD AILRATNNANLQSGSAASGGSGAGGGGGGGGGGGSGSGGGGSTGGGGGTAGGGTQSTAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AILRATNNANLQSGSAASGGSGAGGGGGGGGGGGSGSGGGGSTGGGGGTAGGGTQSTAGP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD GGISQHLTYTSYILKQTPQGTFLVGQPSPQTSGKQLTTGSVVQGTLGVSTSSAQGQQTLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GGISQHLTYTSYILKQTPQGTFLVGQPSPQTSGKQLTTGSVVQGTLGVSTSSAQGQQTLK
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD VISGQKTTLFTQAAHGGQASLMKISDSTLKTVPATSQLSKPGTTMLRVAGGVITTATSPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VISGQKTTLFTQAAHGGQASLMKISDSTLKTVPATSQLSKPGTTMLRVAGGVITTATSPA
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD VALSANGPAQQSEGMAPVSSSTVSSVTKTSGQQQVCVSQATVGTCKAATPTVVSATSLVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VALSANGPAQQSEGMAPVSSSTVSSVTKTSGQQQVCVSQATVGTCKAATPTVVSATSLVP
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD TPNPISGKATVSGLLKIHSSQSSPQQAVLTIPSQLKPLSVNTSGGVQTILMPVNKVVQSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TPNPISGKATVSGLLKIHSSQSSPQQAVLTIPSQLKPLSVNTSGGVQTILMPVNKVVQSF
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KSD STSKPPAILPVAAPTPVVPSSAPAAVAKVKTEPETPGPSCLSQEGQTAVKTEESSELGNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 STSKPPAILPVAAPTPVVPSSAPAAVAKVKTEPETPGPSCLSQEGQTAVKTEESSELGNY
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KSD VIKIDHLETIQQLLTAVVKKIPLITAKSEDASCFSAKSVEQYYGWNIGKRRAAEWQRAMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VIKIDHLETIQQLLTAVVKKIPLITAKSEDASCFSAKSVEQYYGWNIGKRRAAEWQRAMT
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KSD MRKVLQEILEKNPRFHHLTPLKTKHIAHWCRCHGYTPPDPESLRNDGDSIEDVLTQIDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MRKVLQEILEKNPRFHHLTPLKTKHIAHWCRCHGYTPPDPESLRNDGDSIEDVLTQIDSE
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KSD PECPSSFSSADNLCRKLEDLQQFQKREPENEEEVDILSLSEPVKINIKKEQEEKQEEVKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PECPSSFSSADNLCRKLEDLQQFQKREPENEEEVDILSLSEPVKINIKKEQEEKQEEVKF
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KSD YLPPTPGSEFIGDVTQKIGITLQPVALHRNVYASVVEDMILKATEQLVNDILRQALAVGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YLPPTPGSEFIGDVTQKIGITLQPVALHRNVYASVVEDMILKATEQLVNDILRQALAVGY
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420  
pF1KSD QTASHNRIPKEITVSNIHQAICNIPFLDFLTNKHMGILNEDQ
       ::::::::::::::::::::::::::::::::::::::::::
CCDS43 QTASHNRIPKEITVSNIHQAICNIPFLDFLTNKHMGILNEDQ
             1390      1400      1410      1420  




1422 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:19:17 2016 done: Thu Nov  3 05:19:18 2016
 Total Scan time:  5.580 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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