Result of FASTA (omim) for
pF1KSDA1155
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1155, 123 aa
1>>>pF1KSDA1155 123 - 123 aa - 123 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9658+/-0.000278; mu= 8.5864+/- 0.017
mean_var=86.9534+/-17.237, 0's: 0 Z-trim(120.9): 10 B-trim: 1152 in 1/53
Lambda= 0.137541
statistics sampled from 36692 (36702) to 36692 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.43), width: 16
Scan time: 5.100
The best scores are: opt bits E(85289)
XP_005264368 (OMIM: 611018) PREDICTED: polyadenyla ( 123) 846 176.4 1e-44
XP_005264367 (OMIM: 611018) PREDICTED: polyadenyla ( 123) 846 176.4 1e-44
NP_065192 (OMIM: 611018) polyadenylate-binding pro ( 123) 846 176.4 1e-44
XP_011531145 (OMIM: 611018) PREDICTED: polyadenyla ( 123) 846 176.4 1e-44
XP_011531144 (OMIM: 611018) PREDICTED: polyadenyla ( 144) 846 176.4 1.2e-44
XP_016865012 (OMIM: 605604) PREDICTED: polyadenyla ( 127) 527 113.1 1.2e-25
NP_057564 (OMIM: 605604) polyadenylate-binding pro ( 127) 527 113.1 1.2e-25
XP_011541730 (OMIM: 605604) PREDICTED: polyadenyla ( 127) 527 113.1 1.2e-25
XP_016865011 (OMIM: 605604) PREDICTED: polyadenyla ( 127) 527 113.1 1.2e-25
NP_001028284 (OMIM: 605604) polyadenylate-binding ( 127) 527 113.1 1.2e-25
>>XP_005264368 (OMIM: 611018) PREDICTED: polyadenylate-b (123 aa)
initn: 846 init1: 846 opt: 846 Z-score: 923.8 bits: 176.4 E(85289): 1e-44
Smith-Waterman score: 846; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:1-123)
10 20 30 40 50 60
pF1KSD MNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD FQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFIPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFIPG
70 80 90 100 110 120
pF1KSD EKY
:::
XP_005 EKY
>>XP_005264367 (OMIM: 611018) PREDICTED: polyadenylate-b (123 aa)
initn: 846 init1: 846 opt: 846 Z-score: 923.8 bits: 176.4 E(85289): 1e-44
Smith-Waterman score: 846; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:1-123)
10 20 30 40 50 60
pF1KSD MNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD FQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFIPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFIPG
70 80 90 100 110 120
pF1KSD EKY
:::
XP_005 EKY
>>NP_065192 (OMIM: 611018) polyadenylate-binding protein (123 aa)
initn: 846 init1: 846 opt: 846 Z-score: 923.8 bits: 176.4 E(85289): 1e-44
Smith-Waterman score: 846; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:1-123)
10 20 30 40 50 60
pF1KSD MNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD FQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFIPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 FQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFIPG
70 80 90 100 110 120
pF1KSD EKY
:::
NP_065 EKY
>>XP_011531145 (OMIM: 611018) PREDICTED: polyadenylate-b (123 aa)
initn: 846 init1: 846 opt: 846 Z-score: 923.8 bits: 176.4 E(85289): 1e-44
Smith-Waterman score: 846; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:1-123)
10 20 30 40 50 60
pF1KSD MNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD FQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFIPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFIPG
70 80 90 100 110 120
pF1KSD EKY
:::
XP_011 EKY
>>XP_011531144 (OMIM: 611018) PREDICTED: polyadenylate-b (144 aa)
initn: 846 init1: 846 opt: 846 Z-score: 922.8 bits: 176.4 E(85289): 1.2e-44
Smith-Waterman score: 846; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:22-144)
10 20 30
pF1KSD MNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWMEN
:::::::::::::::::::::::::::::::::::::::
XP_011 MPHLPGRRSPLLLCLAVRSIIMNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWMEN
10 20 30 40 50 60
40 50 60 70 80 90
pF1KSD EEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEDFNRQVEEELQEQDFLDRCFQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEGH
70 80 90 100 110 120
100 110 120
pF1KSD DSEDILSKSNLNPDAKEFIPGEKY
::::::::::::::::::::::::
XP_011 DSEDILSKSNLNPDAKEFIPGEKY
130 140
>>XP_016865012 (OMIM: 605604) PREDICTED: polyadenylate-b (127 aa)
initn: 298 init1: 266 opt: 527 Z-score: 581.5 bits: 113.1 E(85289): 1.2e-25
Smith-Waterman score: 527; 60.0% identity (85.6% similar) in 125 aa overlap (1-123:1-124)
10 20 30 40 50
pF1KSD MNGSNMANTSPSVKSKEDQGLSGHD-EKENPFAEYMWMENEEDFNRQVEEELQEQDFLDR
:. . ..::::. . :: ..::. : .:::::::::::::.::::.:::: :..:..:
XP_016 MKDPSRSSTSPSIIN-EDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIER
10 20 30 40 50
60 70 80 90 100 110
pF1KSD CFQEMLDEEDQ-DWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFI
::::::.::.. .::::.:::::.: :.:.:.: : .:.: . ::.. ::::::.::::.
XP_016 CFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFV
60 70 80 90 100 110
120
pF1KSD PGEKY
:: ::
XP_016 PGVKYGNI
120
>>NP_057564 (OMIM: 605604) polyadenylate-binding protein (127 aa)
initn: 298 init1: 266 opt: 527 Z-score: 581.5 bits: 113.1 E(85289): 1.2e-25
Smith-Waterman score: 527; 60.0% identity (85.6% similar) in 125 aa overlap (1-123:1-124)
10 20 30 40 50
pF1KSD MNGSNMANTSPSVKSKEDQGLSGHD-EKENPFAEYMWMENEEDFNRQVEEELQEQDFLDR
:. . ..::::. . :: ..::. : .:::::::::::::.::::.:::: :..:..:
NP_057 MKDPSRSSTSPSIIN-EDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIER
10 20 30 40 50
60 70 80 90 100 110
pF1KSD CFQEMLDEEDQ-DWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFI
::::::.::.. .::::.:::::.: :.:.:.: : .:.: . ::.. ::::::.::::.
NP_057 CFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFV
60 70 80 90 100 110
120
pF1KSD PGEKY
:: ::
NP_057 PGVKYGNI
120
>>XP_011541730 (OMIM: 605604) PREDICTED: polyadenylate-b (127 aa)
initn: 298 init1: 266 opt: 527 Z-score: 581.5 bits: 113.1 E(85289): 1.2e-25
Smith-Waterman score: 527; 60.0% identity (85.6% similar) in 125 aa overlap (1-123:1-124)
10 20 30 40 50
pF1KSD MNGSNMANTSPSVKSKEDQGLSGHD-EKENPFAEYMWMENEEDFNRQVEEELQEQDFLDR
:. . ..::::. . :: ..::. : .:::::::::::::.::::.:::: :..:..:
XP_011 MKDPSRSSTSPSIIN-EDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIER
10 20 30 40 50
60 70 80 90 100 110
pF1KSD CFQEMLDEEDQ-DWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFI
::::::.::.. .::::.:::::.: :.:.:.: : .:.: . ::.. ::::::.::::.
XP_011 CFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFV
60 70 80 90 100 110
120
pF1KSD PGEKY
:: ::
XP_011 PGVKYGNI
120
>>XP_016865011 (OMIM: 605604) PREDICTED: polyadenylate-b (127 aa)
initn: 298 init1: 266 opt: 527 Z-score: 581.5 bits: 113.1 E(85289): 1.2e-25
Smith-Waterman score: 527; 60.0% identity (85.6% similar) in 125 aa overlap (1-123:1-124)
10 20 30 40 50
pF1KSD MNGSNMANTSPSVKSKEDQGLSGHD-EKENPFAEYMWMENEEDFNRQVEEELQEQDFLDR
:. . ..::::. . :: ..::. : .:::::::::::::.::::.:::: :..:..:
XP_016 MKDPSRSSTSPSIIN-EDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIER
10 20 30 40 50
60 70 80 90 100 110
pF1KSD CFQEMLDEEDQ-DWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFI
::::::.::.. .::::.:::::.: :.:.:.: : .:.: . ::.. ::::::.::::.
XP_016 CFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFV
60 70 80 90 100 110
120
pF1KSD PGEKY
:: ::
XP_016 PGVKYGNI
120
>>NP_001028284 (OMIM: 605604) polyadenylate-binding prot (127 aa)
initn: 298 init1: 266 opt: 527 Z-score: 581.5 bits: 113.1 E(85289): 1.2e-25
Smith-Waterman score: 527; 60.0% identity (85.6% similar) in 125 aa overlap (1-123:1-124)
10 20 30 40 50
pF1KSD MNGSNMANTSPSVKSKEDQGLSGHD-EKENPFAEYMWMENEEDFNRQVEEELQEQDFLDR
:. . ..::::. . :: ..::. : .:::::::::::::.::::.:::: :..:..:
NP_001 MKDPSRSSTSPSIIN-EDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIER
10 20 30 40 50
60 70 80 90 100 110
pF1KSD CFQEMLDEEDQ-DWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFI
::::::.::.. .::::.:::::.: :.:.:.: : .:.: . ::.. ::::::.::::.
NP_001 CFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFV
60 70 80 90 100 110
120
pF1KSD PGEKY
:: ::
NP_001 PGVKYGNI
120
123 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:09:52 2016 done: Thu Nov 3 05:09:52 2016
Total Scan time: 5.100 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]