FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA1155, 123 aa
  1>>>pF1KSDA1155 123 - 123 aa - 123 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1098+/-0.000655; mu= 7.5334+/- 0.040
 mean_var=84.6418+/-16.774, 0's: 0 Z-trim(112.9): 2  B-trim: 358 in 1/53
 Lambda= 0.139406
 statistics sampled from 13606 (13608) to 13606 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.418), width:  16
 Scan time:  1.500

The best scores are:                                      opt bits E(32554)
CCDS46322.1 PAIP2B gene_id:400961|Hs108|chr2       ( 123)  846 178.7 7.9e-46
CCDS4211.1 PAIP2 gene_id:51247|Hs108|chr5          ( 127)  527 114.5 1.7e-26


>>CCDS46322.1 PAIP2B gene_id:400961|Hs108|chr2            (123 aa)
 initn: 846 init1: 846 opt: 846  Z-score: 936.2  bits: 178.7 E(32554): 7.9e-46
Smith-Waterman score: 846; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:1-123)

               10        20        30        40        50        60
pF1KSD MNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MNGSNMANTSPSVKSKEDQGLSGHDEKENPFAEYMWMENEEDFNRQVEEELQEQDFLDRC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFIPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FQEMLDEEDQDWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFIPG
               70        80        90       100       110       120

          
pF1KSD EKY
       :::
CCDS46 EKY
          

>>CCDS4211.1 PAIP2 gene_id:51247|Hs108|chr5               (127 aa)
 initn: 298 init1: 266 opt: 527  Z-score: 589.3  bits: 114.5 E(32554): 1.7e-26
Smith-Waterman score: 527; 60.0% identity (85.6% similar) in 125 aa overlap (1-123:1-124)

               10        20         30        40        50         
pF1KSD MNGSNMANTSPSVKSKEDQGLSGHD-EKENPFAEYMWMENEEDFNRQVEEELQEQDFLDR
       :.  . ..::::. . ::  ..::. : .:::::::::::::.::::.:::: :..:..:
CCDS42 MKDPSRSSTSPSIIN-EDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIER
               10         20        30        40        50         

      60        70         80        90       100       110        
pF1KSD CFQEMLDEEDQ-DWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFI
       ::::::.::.. .::::.:::::.: :.:.:.: : .:.: . ::.. ::::::.::::.
CCDS42 CFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFV
      60        70        80        90       100       110         

      120      
pF1KSD PGEKY   
       :: ::   
CCDS42 PGVKYGNI
     120       




123 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:09:51 2016 done: Thu Nov  3 05:09:51 2016
 Total Scan time:  1.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]