GENSCAN 1.0	Date run:  3-Nov-116	Time: 05:07:13

Sequence gi568815576f:28887076_29153619 : 266544 bp : 45.27% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.09 PlyA -     28     23    6                               1.05
 1.08 Term -  12458  12368   91  1  1   78   53    61 0.431  -1.21
 1.07 Intr -  14362  14292   71  1  2   82   50    74 0.348   0.98
 1.06 Intr -  15678  15608   71  1  2   38   93    41 0.145  -1.50
 1.05 Intr -  20569  20407  163  1  1   29   97    70 0.270   1.55
 1.04 Intr -  21400  21238  163  0  1  101  115    40 0.468   7.98
 1.03 Intr -  45113  45056   58  0  1   79   64    76 0.214   2.24
 1.02 Intr -  56307  56191  117  1  0  -54   87   143 0.203   0.44
 1.01 Init -  64975  64828  148  1  1   48   88   119 0.611   8.15
 1.00 Prom -  74187  74148   40                              -6.26

 2.00 Prom +  75647  75686   40                              -4.96
 2.01 Init +  75920  75926    7  1  1   50   95     0 0.606  -1.98
 2.02 Intr +  77596  77651   56  2  2   63   98    71 0.242   4.30
 2.03 Intr + 100001 100126  126  1  0   91  121    54 0.664   9.88
 2.04 Intr + 119981 120089  109  1  1   41   90    10 0.001  -3.64
 2.05 Intr + 138771 138878  108  1  0   50   42    85 0.241   0.36
 2.06 Intr + 142841 142988  148  0  1   45   95    92 0.672   4.89
 2.07 Intr + 144305 144392   88  2  1   78   73    33 0.490   0.77
 2.08 Intr + 146557 146619   63  0  0   44   99    76 0.457   3.21
 2.09 Intr + 149433 149529   97  2  1  101   71   -12 0.045  -2.02
 2.10 Intr + 155345 155373   29  0  2   58  116    44 0.896   2.03
 2.11 Intr + 155420 155494   75  1  0   75  115    73 0.995   8.41
 2.12 Intr + 156224 156355  132  1  0   99   46   223 0.997  20.04
 2.13 Intr + 157705 157815  111  0  0  116   72   108 0.998  12.58
 2.14 Intr + 159641 159808  168  1  0   84   80   168 0.937  15.74
 2.15 Intr + 161314 161416  103  0  1   83   61   112 0.999   7.75
 2.16 Intr + 162122 163873 1752  0  0  115   94  1673 0.950 157.92
 2.17 Intr + 166080 166174   95  1  2  119   83   -42 0.868  -1.92
 2.18 Term + 166504 166602   99  0  0  151   38    73 0.933   6.73
 2.19 PlyA + 166663 166668    6                               1.05

 3.03 PlyA - 167980 167975    6                               1.05
 3.02 Term - 172107 171667  441  0  0   83   49   299 0.984  20.76
 3.01 Init - 172646 172608   39  2  0   80   91    57 0.295   5.43
 3.00 Prom - 174995 174956   40                              -6.06

 4.00 Prom + 175203 175242   40                              -6.06
 4.01 Init + 186056 186152   97  1  1   76  117   220 0.754  22.17
 4.02 Term + 186282 187099  818  1  2  108   44   312 0.742  22.10
 4.03 PlyA + 187840 187845    6                               1.05

 5.03 PlyA - 188385 188380    6                               1.05
 5.02 Term - 193762 193606  157  0  1   65   41   172 0.633   7.61
 5.01 Init - 213106 213093   14  1  2  112   73    23 0.002   1.41
 5.00 Prom - 213342 213303   40                              -3.56

 6.00 Prom + 213440 213479   40                              -3.46
 6.01 Init + 223714 223766   53  0  2   89   47    54 0.017   2.03
 6.02 Intr + 232764 232840   77  0  2   36   94    62 0.012   0.76
 6.03 Intr + 234282 234406  125  1  2   94   59    42 0.627   2.20
 6.04 Intr + 238188 238341  154  2  1   71   73   131 0.690   9.55
 6.05 Intr + 250267 250599  333  2  0  108  116   367 0.997  37.04
 6.06 Intr + 251549 251707  159  0  0  103   69   229 0.969  22.46
 6.07 Intr + 253207 253291   85  2  1   93   89    79 0.776   7.38
 6.08 Intr + 260936 261054  119  2  2   55   22    85 0.358  -1.29
 6.09 Term + 263717 263892  176  0  2   40   49   171 0.613   6.32
 6.10 PlyA + 265822 265827    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 205013 205121  109  1  1   55   25   110 0.837   1.78
S.002 Intr + 207183 207345  163  1  1  102  110    55 0.987   8.13


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576f:28887076_29153619|GENSCAN_predicted_peptide_1|293_aa
MHSEKRKPDIPMLAQCSLLHGEEEQVEASRILIPLINTGEEVHANGMGAETTGKQQEVIV
KGSVAKGSKCRGSKHVPIKVQQLQKNHKDLFFNPFNLGYKQALNDDHRLLVSDSRISPPK
ETCTRPNASSRCVSRYYCLLYSMIGMQHTPRTKGGHQDSQEKRKKLVPVIKSKYAAGLEN
QMKAKSYQQIPMEPDHERHGHHLGTVGNHAATTCSLGKVYLHFTDAETEIQRGKAIFPQQ
DYRNQKQQITIAEGEALEKGEQLRAFPSKNKVGMATNAPVTVVPNHIRRGLAC

>gi568815576f:28887076_29153619|GENSCAN_predicted_CDS_1|882_bp
atgcactcggagaaaagaaagccagatatacccatgctggctcagtgctccttgctccac
ggggaagaggagcaagtggaggccagcaggattttaatacctctcatcaacacaggggaa
gaggtacatgcaaacgggatgggagcagagacaacaggcaaacagcaagaggtcatcgtc
aaaggatcggttgctaagggaagcaagtgtagaggcagcaagcatgtccccatcaaagtc
cagcagctgcagaagaaccacaaagacctcttcttcaatcctttcaaccttggttacaaa
caggcactcaatgatgaccacaggttgctagttagtgactctcgcatatccccaccaaaa
gagacttgcacacggcccaacgctagttcaagatgtgtttctagatattactgccttctc
tacagcatgattggcatgcaacatacaccaaggacaaaaggaggccaccaagactcccag
gagaagagaaaaaagctagtaccagtaatcaaatctaaatatgctgctgggttggaaaac
caaatgaaagcaaaatcttatcaacaaatccccatggaaccagaccatgaaaggcacgga
caccatctgggcactgtggggaaccatgcggccaccacctgctcccttggaaaagtttat
ctccattttacagatgcagaaactgagatccagagaggcaaagccatctttccacagcag
gactacagaaatcagaagcagcaaatcacaattgctgaaggagaagcattagagaagggg
gaacaactcagagctttcccttccaaaaacaaggttggtatggcaaccaatgccccagtc
accgtggtccctaaccacatccgccggggcttggcatgctga

>gi568815576f:28887076_29153619|GENSCAN_predicted_peptide_2|1121_aa
MDGSDEDELLYSSPLRIELQKMHPLGLCNNNDEEDLYEYGWVGVVKLEQPELDPKPCLTV
LGKYPRRELLSDDHFAANAGRRGQNDLNNVCGHAAGLGRVDCKPLTAFQPERGIDGIVNT
GQKVVLMIIVTPRMRVAICIEGEWSFLKFLVADYIRFGLKWDFWKLNQDNDFQVLPKAYL
PGIGRIFSPVTRVLLVCDLISYGMKSFCRKTGPLGGSSGDEKTMDGFGSQNQQNLLINRP
PNPEIKSVDKFACIVCASLSILSFMQPSLIAKANFEKAKRAVQRGATAVIFDVSENPEAI
DQLNQGSEDPLKRPVVYVKGADAIKLMNIVNKQKVARARIQHRPPRQPTEYFDMGIFLAF
FVVVSLVCLILLVKIKLKQRRSQNSMNRLAVQALEKMETRKFNSKSKGRREGSCGALDTL
SSSSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNIIEQKGNPS
AVCVETSNLSRGRQQRVTLPVHYPGRVHRTNAIPAYPTRTSMDSHGNPVTLLTMDRHGEQ
SLYSPQTPAYIRSYPPLHLDHSLAAHRCGLEHRAYSPAHPFRRPKLSGRSFSKAACFSQY
ETMYQHYYFQGLSYPEQEGQSPPSLAPRGPARAFPPSGSGSLLFPTVVHVAPPSHLESGS
TSSFSCYHGHRSVCSGYLADCPGSDSSSSSSSGQCHCSSSDSVVDCTEVSNQGVYGSCST
FRSSLSSDYDPFIYRSRSPCRASEAGGSGSSGRGPALCFEGSPPPEELPAVHSHGAGRGE
PWPGPASPSGDQVSTCSLEMNYSSNSSLEHRGPNSSTSEVGLEASPGAAPDLRRTWKGGH
ELPSCACCCEPQPSPAGPSAGAAGSSTLFLGPHLYEGSGPAGGEPQSGSSQGLYGLHPDH
LPRTDGVKYEGLPCCFYEEKQVARGGGGGSGCYTEDYSVSVQYTLTEEPPPGCYPGARDL
SQRIPIIPEDVDCDLGLPSDCQGTHSLGSWGGTRGPDTPRPHRGLGATREEERALCCQAR
ALLRPGCPPEEAGAVRANFPSALQDTQESSTTATEAADLRLGNTPAPSEITYTPSVHFCH
PIAKLLCLKDRDLTQQTAAAREPELRRNSYLEIGNCMETPN

>gi568815576f:28887076_29153619|GENSCAN_predicted_CDS_2|3366_bp
atggatggttctgatgaggatgaacttctgtactccagccccctcagaatagagctgcag
aagatgcacccactgggcctatgtaataacaatgacgaagaggacttgtatgaatatggc
tgggtaggagtggtgaagctggaacagccagaattggacccgaaaccatgcctcactgtc
ctaggcaagtatccccggagagaattgttatcagatgatcattttgctgctaatgcaggg
aggaggggacagaacgacttgaataacgtgtgtggtcatgcagctggtctgggcagagtg
gattgcaagcccctcactgctttccagcccgaaaggggcattgatgggattgtgaacaca
ggacagaaagtagtattaatgattattgttacaccccggatgcgtgttgccatatgcatt
gaaggggagtggtcctttttgaagtttctagttgctgactatataagatttggcctgaag
tgggacttctggaaactcaaccaagataacgacttccaggttcttccaaaagcttatctt
ccaggcataggcaggattttctcaccggttacccgtgtgctcttggtgtgtgacctcatt
tcctatggaatgaaaagtttctgtcggaaaacagggcccttgggtggcagcagtggggat
gaaaaaacgatggatggatttggaagtcagaatcagcaaaatttgctcatcaacagaccg
cctaacccagaaattaaatctgttgacaaatttgcctgtattgtctgtgccagtctatct
atcttgtcatttatgcagccaagcctgattgccaaggccaactttgaaaaggccaagcga
gcagtacagcggggagctactgcagtcatctttgatgtgtctgaaaacccagaagctatt
gatcagctgaaccagggctctgaagacccgctcaagaggccggtggtgtatgtgaagggt
gcagatgccattaagctgatgaacatcgtcaacaagcagaaagtggctcgagcaaggatc
cagcaccgccctcctcgacaacccactgaatactttgacatggggattttcctggctttc
ttcgtcgtggtctccttggtctgcctcatcctccttgtcaaaatcaagctgaagcagcga
cgcagtcagaattccatgaacaggctggctgtgcaggctctagagaagatggaaaccaga
aagttcaactccaagagcaaggggcgccgggaggggagctgtggggccctggacacactc
agcagcagctccacgtccgactgtgccatctgtctggagaagtacattgatggagaggag
ctgcgggtcatcccctgtactcaccggtttcacaggaagtgcgtggacccctggctgctg
cagcaccacacctgcccccactgtcggcacaacatcatagaacaaaagggaaacccaagc
gcggtgtgtgtggagaccagcaacctctcacgtggtcggcagcagagggtgaccctgccg
gtgcattaccccggccgcgtgcacaggaccaacgccatcccagcctaccctacgaggaca
agcatggactcccacggcaaccccgtcaccttgctgaccatggaccggcacggggagcag
agcctctattccccgcagacccccgcctacatccgcagctacccacccctccacctggac
cacagcctggccgctcaccgctgcggcctggagcaccgggcctactccccagcccacccc
ttccgcaggcccaagttgagtggccgcagcttctccaaggcagcttgcttctcccagtat
gagaccatgtaccagcactactacttccagggcctcagctacccggagcaggaggggcag
tccccacctagcctcgcaccccggggcccggcccgtgcctttcctccgagcggcagtggc
agcctgctcttccccaccgtggtgcacgtggccccgccctcccacctggagagcggcagc
acgtccagcttcagctgctatcacggccaccgctcggtgtgcagtggctacctggccgac
tgcccaggcagcgacagcagcagcagcagcagctccggccagtgccactgttcctccagt
gactctgtggtagactgcactgaggtcagcaaccagggcgtgtacgggagctgctccacc
ttccgcagctccctcagcagcgactatgaccccttcatctaccgcagccggagcccctgt
cgtgccagtgaggcggggggctcgggcagctcgggccggggacctgccctgtgcttcgag
ggctccccgcctcccgaggagctcccggcggtgcacagtcatggtgctgggcggggcgag
ccttggccgggccctgcctctccctcgggggatcaggtgtccacctgcagcctggagatg
aactacagcagcaactcctccctggagcacagggggcccaatagctctacctcagaagtg
gggctcgaggcttctcctggggccgcccctgacctcaggaggacctggaaggggggccac
gagttgccgtcgtgtgcctgctgctgcgagccccagccctccccagccgggcctagcgcc
ggagcagctggcagcagcaccttgttcctggggccccacctctacgagggctctggcccg
gcgggtggggagccccagtcaggaagctcccagggcttgtacggccttcaccccgaccat
ttgcccaggacagatggggtgaaatacgagggtctgccctgctgcttctatgaagagaag
caggtggcccgcgggggcggagggggcagcggctgctacactgaggactactcggtgagt
gtgcagtacacgctcaccgaggaaccaccgcccggctgctaccccggggcccgggacctg
agccagcgcatccccatcattccagaggatgtggactgtgatctgggcctgccctcggac
tgccaagggacccacagcctcggctcctggggtgggacgcgaggcccggataccccacgg
ccccacaggggcctgggagcaacccgggaagaggagcgggctctgtgctgccaggctagg
gccctactgcggcctggctgccctccggaggaggcgggtgctgtcagggccaacttccct
agtgccctccaggacactcaggagtccagcaccactgccactgaggctgcagatcttagg
ttaggtaacactccagccccctctgagatcacctacacaccttctgttcacttctgtcat
cctattgctaaattactttgtctcaaggaccgagatctcactcagcagacagcagcagcc
cgggagcctgagctcaggaggaactcttacctggaaattgggaactgtatggagactcca
aactga

>gi568815576f:28887076_29153619|GENSCAN_predicted_peptide_3|159_aa
MENLAYEGLIGIQSKESSKEKKLTVRQDLEDRYAEHVAATQALPQDSGTAAWKGRVLLPE
TQKRQQLSEDTLTIHGLPTEGYQALYHAVVEPMLWNPSGTPKRYSLELGKAIKQKLWEAL
CSQGAISEGAQRDRFPGRKQPGVHEEPVLKKWPKLKSKK

>gi568815576f:28887076_29153619|GENSCAN_predicted_CDS_3|480_bp
atggagaacttggcctacgaaggcctgattggaatccagagtaaagaaagttcaaaggag
aaaaaactaacagtccgccaagatcttgaggacagatatgctgaacatgtggctgccacc
caagcgctaccccaggacagtgggacagcagcctggaagggccgagtgttgcttcctgaa
acccaaaagagacagcagttgtcggaggacacgctaaccatccatggtctccccacagag
ggttaccaggctctgtaccacgctgtggtggagccaatgctgtggaatccttcagggacc
cccaagaggtacagcctggagctgggcaaggccattaaacaaaagctctgggaggctctt
tgcagtcagggtgccatctctgaaggtgctcagagggaccggttccctggcaggaagcag
ccaggtgtccacgaggagcctgtactcaagaaatggcccaagttaaagagcaaaaaatag

>gi568815576f:28887076_29153619|GENSCAN_predicted_peptide_4|304_aa
MAPPAARLALLSAAALTLAARPAPSPGLGPGPGDAPQAGMVPSWDPGYPQARHRRPRARY
CPPAAGPGAPQRRPSAQEALSALSLPRPSATPPGLGHLLCLGIWDPLPESLSDPNQAGTP
PLPGTSWDPVPSPQRLPPGRDVLCSPVPPRIPSQNPQRLPTGQEAPCSPVPPGIPSPSPQ
RPLPGRDDPCSPVPPGIPPQVLHRRTLHRDDSPATRGYTPLSETSSDIPPLGQGPLPEPH
CDAPASPSPLLPPTPVEPGASPRRAERRREEPALSPFSRVLGCTRLADIITSASRGTGWT
CSPC

>gi568815576f:28887076_29153619|GENSCAN_predicted_CDS_4|915_bp
atggcgccgccagccgcccgcctcgccctgctctccgccgcggcgctcacgctggcggcc
cggcccgcgcctagccccggcctcggccccggacccggcgacgcccctcaggccgggatg
gtcccttcctgggacccgggctacccccaggcccgtcatcgacgcccccgggcccggtac
tgtcccccggctgcaggacccggtgctcctcagcgacgcccctcagcccaggaggccctc
tccgccttgagtcttccaagaccctctgcgacgccccccgggctgggacatcttctctgt
ctcgggatctgggacccgctgcccgagtccctcagcgaccccaaccaggccgggacgccc
cctctccccggtacctcctgggatcccgtcccaagtccccagcgacttcccccgggccgg
gacgtcctctgctccccggtacctcctaggatcccgtcccaaaatccccagcgactcccc
acgggccaggaggccccctgctccccggtacctcctgggatcccgtccccaagtccccag
cgacccctcccgggccgggacgacccctgctccccagtacctcctgggatcccgccccaa
gtccttcatcgacgcaccttgcaccgggacgactcccccgctacaagaggctatacgccc
ctctccgagacctccagcgacatccctcccctgggccaaggtcccctccctgagcctcac
tgcgacgcccccgcgtcccccagtcctctcctcccgcctacaccggtggaacccggcgcc
tccccgcgcagagcagagcggaggcgggaggagccggcgctcagccccttttcccgagtc
ctcggctgcacccgcttggcggacattataacttctgcctcgcgaggaacgggatggact
tgttcgccctgctag

>gi568815576f:28887076_29153619|GENSCAN_predicted_peptide_5|56_aa
MAPLQMFSSSIPGLYRLDASSTSLVVTAKMSPSIAKCPLGAKSPPVEITELEEMVK

>gi568815576f:28887076_29153619|GENSCAN_predicted_CDS_5|171_bp
atggcgccgttgcagatgtttagcagcagcatccctggcctctaccggctagatgccagt
agtacctctttagttgtgacagccaaaatgtctccaagtattgcaaaatgtcccctgggg
gcaaaatctcctccagttgaaatcactgagttagaagaaatggtcaaataa

>gi568815576f:28887076_29153619|GENSCAN_predicted_peptide_6|426_aa
MAAVRFGTEVADEQHRVQICEYVTLDGIGDFADMMKDFVIDYPVPGNLGCYKDHGNPPPL
TGTSKTSNKLTIQTCISFCRSQRFKFAGMESGYACFCGNNPDYWKYGEAASTECNSVCFG
DHTQPCGGDGRIILFDTLVGACGGNYSAMSSVVYSPDFPDTYATGRVCYWTIRVPGASHI
HFSFPLFDIRDSADMVELLDGYTHRVLARFHGRSRPPLSFNVSLDFVILYFFSDRINQAQ
GFAVLYQAVKEELPQERPAVNQTVAEVITEQANLSVSAARSSKVLYVITTSPSHPPQTVP
GWTVYGLATLLILTVTAIVAKILLHVTFKIEVGVKNEEVSGMVLRYLTWVPERREGPLFD
IRNVKGARLRTVYQTLCQVTNRHYRIHLCRNPTRELRVREGVQPGAAKVRTQPGTTGSKA
GGPYSC

>gi568815576f:28887076_29153619|GENSCAN_predicted_CDS_6|1281_bp
atggcagctgtcagatttggaacggaagttgcagatgaacagcacagggtgcaaatctgt
gaatacgttaccttagatggcataggagattttgcagatatgatgaaagattttgtgata
gattatccagtgcctggaaaccttggctgctacaaggatcatggaaacccacctcctcta
actggcaccagtaaaacgtccaacaaactcaccatacaaacttgcatcagtttttgtcgg
agtcagaggttcaagtttgctgggatggagtcaggctatgcttgcttctgtggaaacaat
cctgattactggaagtacggggaggcagccagtaccgaatgcaacagcgtctgcttcggg
gatcacacccaaccctgtggtggcgatggcaggatcatcctctttgatactctcgtgggc
gcctgcggtgggaactactcagccatgtcttctgtggtctattcccctgacttccccgac
acctatgccacggggagggtctgctactggaccatccgggttccgggggcctcccacatc
cacttcagcttccccctatttgacatcagggactcggcggacatggtggagcttctggat
ggctacacccaccgtgtcctagcccgcttccacgggaggagccgcccacctctgtccttc
aacgtctctctggacttcgtcatcttgtatttcttctctgatcgcatcaatcaggcccag
ggatttgctgttttataccaagccgtcaaggaagaactgccacaggagaggcccgctgtc
aaccagacggtggccgaggtgatcacggagcaggccaacctcagtgtcagcgctgcccgg
tcctccaaagtcctctatgtcatcaccaccagccccagccacccacctcagactgtccca
ggatggacagtctatggtctggcaactctcctcatcctcacagtcacagccattgtagca
aagatacttctgcacgtcacattcaaaatagaggtgggggttaagaatgaggaggtgtct
gggatggtgctccggtacctgacatgggtgcctgagcggagagaggggccactcttcgac
ataaggaatgtaaaaggagccaggttacgtactgtgtaccagacgctgtgccaagtgacc
aacagacattaccgaattcatctttgccgcaacccaacaagggaactgagggtcagagaa
ggggtccagccaggggccgccaaggttcggactcagcctgggaccactggctccaaagct
gggggtccttactcctgttga