GENSCAN 1.0	Date run:  3-Nov-116	Time: 05:04:14

Sequence gi568815578r:47110764_47410206 : 299443 bp : 46.94% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   8412   8519  108  1  0   29   22   128 0.182   0.56
 1.02 Intr +  15140  15230   91  0  1   60   59    97 0.098   3.05
 1.03 Intr +  26454  26484   31  0  1   59  103    17 0.269  -1.57
 1.04 Intr +  32296  32385   90  0  0  126   68   118 0.930  13.79
 1.05 Term +  42494  42532   39  1  0   79   43    65 0.112  -1.71
 1.06 PlyA +  43275  43280    6                               1.05

 2.04 PlyA -  44050  44045    6                               1.05
 2.03 Term -  50289  50175  115  2  1   41   39   144 0.539   2.84
 2.02 Intr -  50365  50314   52  2  1   62   37    34 0.383  -6.33
 2.01 Init -  50908  50560  349  1  1   63   80   407 0.831  34.75
 2.00 Prom -  51043  51004   40                              -1.16

 3.00 Prom +  52231  52270   40                              -4.56
 3.01 Init +  55921  56002   82  0  1   56   90    75 0.751   3.85
 3.02 Intr +  57751  57842   92  2  2  100   92   -20 0.924  -0.69
 3.03 Intr +  58376  58434   59  1  2  102   81    90 0.984   7.38
 3.04 Intr +  61944  62104  161  0  2  141   89   310 0.896  36.03
 3.05 Intr +  69035  69206  172  0  1  118  -16   126 0.928   4.20
 3.06 Intr +  70052  70173  122  2  2  106   91   117 0.996  13.94
 3.07 Intr +  72528  72628  101  1  2   91   75   134 0.904  12.23
 3.08 Intr +  85813  85964  152  0  2   70   91    35 0.156   0.96
 3.09 Intr +  95052  95193  142  0  1   51   25   132 0.194   3.56
 3.10 Term +  97859  97966  108  1  0   99   43    51 0.230   0.21
 3.11 PlyA +  98475  98480    6                              -0.45

 4.31 PlyA -  98698  98693    6                              -0.45
 4.30 Term - 100134  99998  137  1  2  106   43   107 0.994   6.18
 4.29 Intr - 101962 101834  129  2  0   80   72    97 0.738   7.97
 4.28 Intr - 105409 105283  127  1  1   90   42    52 0.499   1.05
 4.27 Intr - 110711 110551  161  0  2  105   85   140 0.997  15.11
 4.26 Intr - 113793 113554  240  1  0   77   95   413 0.967  38.42
 4.25 Intr - 116518 116440   79  1  1   90   82    63 0.961   5.02
 4.24 Intr - 119043 118963   81  0  0   99   55    38 0.653   1.43
 4.23 Intr - 125753 125563  191  0  2   61   87   261 0.942  22.60
 4.22 Intr - 128369 127995  375  0  0   40   81   321 0.671  21.59
 4.21 Intr - 135754 135245  510  2  0   41  115   517 0.887  42.64
 4.20 Intr - 138676 138524  153  2  0   61   42   145 0.059   7.24
 4.19 Intr - 151665 151525  141  1  0   56   52    87 0.000   2.22
 4.18 Intr - 166032 165551  482  2  2  142   76   645 0.136  61.38
 4.17 Intr - 169814 169702  113  2  2   59   67    64 0.733   0.58
 4.16 Intr - 170344 170231  114  1  0   84    5    90 0.520   0.94
 4.15 Intr - 172885 172808   78  1  0  101   75    11 0.319   0.85
 4.14 Intr - 176521 176466   56  2  2   88   87    22 0.917   0.80
 4.13 Intr - 179511 179424   88  0  1  102   84    79 0.991   8.44
 4.12 Intr - 181125 181033   93  0  0   88   58    98 0.991   6.96
 4.11 Intr - 184016 183903  114  2  0   41   78   121 0.718   7.04
 4.10 Intr - 199441 199293  149  2  2  115  103    82 0.498  12.35
 4.09 Intr - 200602 200495  108  2  0   79   85    12 0.494   0.26
 4.08 Intr - 206831 206712  120  0  0   85   66    45 0.477   2.47
 4.07 Intr - 208615 208482  134  0  2  102   21    84 0.488   3.39
 4.06 Intr - 220273 220103  171  0  0  103   93    25 0.533   3.56
 4.05 Intr - 227067 226941  127  1  1   16   89   107 0.246   3.34
 4.04 Intr - 237163 237093   71  0  2   90  113    52 0.082   6.73
 4.03 Intr - 237284 237254   31  0  1   68   93    13 0.019  -3.01
 4.02 Intr - 250022 249909  114  0  0   55   71    73 0.037   2.72
 4.01 Init - 258354 258279   76  0  1   56   67    85 0.073   4.47
 4.00 Prom - 272098 272059   40                              -1.86


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 138659 138524  136  2  1   77   42   130 0.929   7.61
S.002 Intr + 148907 148975   69  0  0   96   63    64 0.871   3.85
S.003 Term + 150786 150856   71  1  2    5   48   182 0.913   4.00
S.004 Intr - 166032 165468  565  2  1  142   99   630 0.804  62.30


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:47110764_47410206|GENSCAN_predicted_peptide_1|119_aa
XFFQRPKIAGDEVSPAKRQEGVNAIVFGVDFDREIGERGEEISIPGLVLKHMCPEVQDVR
VIDTEEKICNASENGFHDTTTSVRIGLMMEEMIFNLADTHLFFNDLEGKNDQYIKPVMS

>gi568815578r:47110764_47410206|GENSCAN_predicted_CDS_1|360_bp
ntgttcttccagcgtccaaagattgctggtgatgaggtgtcacctgctaaacggcaggaa
ggtgtcaacgccattgtatttggggttgactttgacagggaaataggagagagaggggag
gagatctccattccaggattggtgctgaagcacatgtgtcctgaagttcaggacgtcagg
gtaattgacacagaagaaaaaatatgtaatgcttcagaaaatgggtttcatgacaccacg
acgtccgtgcgcattggccttatgatggaagagatgatcttcaaccttgcagatacacat
ctgttcttcaatgacctggaggggaaaaatgaccagtacatcaaaccagtgatgtcatag

>gi568815578r:47110764_47410206|GENSCAN_predicted_peptide_2|171_aa
MGNHGGFCGGFSRGIGGWGHSRGQGPGQGRGAHRGKTKDKEWTSIPKLGHLVKDMKIKFL
EEIYLFFLAIKEFEIIDFFLGASLKDEVLKIMPVQKQTHASQRTRLKGFIVIGDYNGALA
SSRSPCPKAAADGGCTATLGNFAKATFDAISKTYSYPTPNLWKETVFTKSP

>gi568815578r:47110764_47410206|GENSCAN_predicted_CDS_2|516_bp
atggggaaccacggtggcttctgtggaggcttcagcaggggcatcgggggctggggtcat
agccgcggacagggcccgggccaaggccgaggagctcacagaggcaagaccaaggacaag
gagtggacgtctatccccaagctgggccacctggtcaaggacatgaagatcaagttcctg
gaggagatctatctcttcttcctggccatcaaagagtttgagatcattgactttttcctg
ggggcttctctcaaggatgaggttttgaagatcatgccagtacaaaagcagacccacgcc
agccagcgcaccaggctcaagggatttattgtcatcggtgactataatggggcactggca
tcatctcggtccccatgcccaaaagctgctgctgatggcggctgcactgccaccctggga
aacttcgccaaggccacctttgatgctatctctaagacctacagctacccgacccccaac
ctctggaaggagactgtattcaccaagtctccctag

>gi568815578r:47110764_47410206|GENSCAN_predicted_peptide_3|396_aa
MYAVATVHPTLFSVLSCSISLLLTSSGERGVSPRKLSGKQHGIGVCSMASPGDSAWHIDC
DQIHVDDVSSDDNGQDLSTYNFSADGFHSSAPGANLCLGSGVHGGVDWMRKLAFRYRRVK
EMYNTYKNNVGGLIGTPKRETWLQLRAELEALTDLWLTHSLKALNLINSRQVAALIFLCA
TELSRSRQWPNCVNVLVTTTQLIPALAKVLLYGLGSVFPIENIYSATKTGKESCFERIMQ
RFGRKAVYVVIGDGVEEEQGAKKVPLEVGPGKSNNASLPRKDSQGVCFGLRRATGIALMI
LQHRRRYVRPKRSCGPDLSTGCSFAYGHQIASLLDCMKRSEPVPAPVIAKGNQQGTGSFC
QDASLMKAGTRLLDGTMGSSVPGQCLTRCVFADWQE

>gi568815578r:47110764_47410206|GENSCAN_predicted_CDS_3|1191_bp
atgtatgcagtagccactgtgcacccgacactgttctcggtgctctcatgcagcatctcg
cttctcctcacctcatctggagagagaggtgtttccccaaggaaactgagtgggaaacag
catggcattggagtttgttcaatggcaagccctggggatagtgcctggcacatagattgt
gaccagatccacgttgatgacgtctcatcagatgacaatggccaagatttaagcacatac
aacttctccgctgacggcttccacagttcggccccaggagccaacctgtgcctgggctct
ggcgtgcacggcggcgtggactggatgaggaagctggccttccgctaccggcgggtgaag
gagatgtacaatacctacaagaacaacgttggtgggttgataggcactcccaaaagggag
acctggctacagctccgagctgagctggaagctctcacagacctctggctgacccactcc
ctgaaggcactaaacctcatcaactcccggcaagtggcagccctcattttcctctgtgcc
actgaactttctcgcagtagacagtggcccaactgtgtcaatgtgctggtcaccaccact
caactaattcctgccctggccaaagtcctgctatatggcctggggtctgtgtttcctatt
gagaacatctacagtgcaaccaagacagggaaggagagctgcttcgagaggataatgcag
agattcggcagaaaagctgtctacgtggtgatcggtgatggtgtggaagaggagcaagga
gcgaaaaaggtgccacttgaagtgggacccggaaagagcaataacgcaagccttccgaga
aaggattctcaaggcgtctgctttgggctgcgccgggctacagggattgctctgatgata
ctgcagcaccgtcgacgatatgttaggcccaagaggtcatgtgggccagatctctccaca
ggctgcagttttgcctatggccaccagatagcgagcttgctggactgcatgaaaaggtct
gagccagttcctgccccggtcattgccaaaggaaaccagcaaggaactggcagcttctgc
caggatgcaagtttgatgaaggcagggacccgactccttgatggcaccatgggatcctca
gtgcctggacagtgcctgacgcgatgtgtgtttgctgattggcaggaatga

>gi568815578r:47110764_47410206|GENSCAN_predicted_peptide_4|1520_aa
MVALEPSTCAEWSYAAAVGSGRRSEGSRTGYLGMQLVGPLLLLLAWLEASGTGEPFQGGQ
ASAPLDKDEGMSLSLAEEEIKTEQEVVEGMDISTRSKERFSSQETKLSSFQDVRLTFVSE
GNDPAERCSYINGKCHLDASHTDCADPSKPQGLCPYLEGPLLAFLSLLPINFKAQNEDEF
CLLFLLILFYYHLACCWLPSDIVTSASRTTAVPRIYSQSHEINGSSVHCTGDFQLSRAAV
EGPSRLAVDIIKEIKHPQKHKKLPAFQLRPFPLREETIPCNGAGVYRCEPPCLAEVYMCL
NEMLKDEKKGCMNKSGADPGSAERTAQKRKFPSPPHSSNGHSPQDTSTSPIKKKKKPGLL
NSNNKEQKITVAECIETQSKAMTMLTIEQLSYLLKFAIQKMKQPGTDAFQKPVPLEQHPD
YAEYIFHPMDLCTLEKNAKKKMYGCTEAFLADAKWILHNCIIYNGGNHKLTQIAKVVIKI
CEHEMNEIEVCPECYLAACQKRDNWFCEPCKYIFDDCCVPACVVEAGDSNVSAHVKADIL
AGKKDDTQTLMVDGCSLSAVTALQGPPSLTRQTATEGGLQSMKDGVAWVPINNCYLMSKE
IPFSVKKTKSIFNSAMQEMEVYVENIRRKFGVFNYSPFRTPYTPNSQYQMLLDPTNPSAG
TAKIDKQEKVKLNFDMTASPKILMSKPVLSGGTGRRISLSDMPRSPMSTNSSVHTGSDVE
QDAEKKATSSHFSASEESMDFLDKSTASPASTKTGQAGSLSGSPKPFSPQLSAPITTKTD
KTSTTGSILNLNLDRSKAEMDLKELSESVQQQSTPVPLISPKRQIRSRFQLNLDKTIESC
KAQLGINEISEDVYTAVEHSDSEDSEKSDSSDSEYISDDEQKSKNEPEDTEDKEGCQMDK
EPSAVKKKPKPTNPVEIKEELKSTSPASEKADPGAVKDKASPEPEKDFSEKAKPSPHPIK
DKLKGKDETDSPTVHLGLDSDSESELVIDLGEDHSGREGRKNKKEPKEPSPKQDGKTPPS
TTVGSHSPPETPVLTRSSAQTSAAGATATTSTSSTVTVTAPAPAATGSPVKKQRPLLPKE
TAPAVQRVVWNSSSKFQTSSQKWHMQKMQRQQQQQQQQNQQQQPQSSQGTRYQTRQAVKA
VQQKEITQSPSTSTITLVTSTQSSPLVTSSGSMSTLVSSVNADLPIATASADVAADIAKY
TSKMMDAIKGTMTEIYNDLSKNTTGSTIAEIRRLRIEIEKLQWLHQQELSEMKHNLELTM
AEMRQSLEQERDRLIAEVKKQLELEKQQAVDETKKKQWCANCKKEAIFYCCWNTSYCDYP
CQQAHWPEHMKSCTQSATAPQQEADAEVNTETLNKSSQGSSSSTQSAPSETASASKEKET
SAEKSKESGSDSIVHDGYFSSSLLCFGPPCISPCVTIPGRSGLLLCPLQGLRVSKRCDKQ
PAYAPTTTDHQPHPNYPAQKCKYEPVLRKLPGLLPDHSRSNKSSWSSSDEKRGSTRSDHN
TSTSTKSLLPKESRLDTFWD

>gi568815578r:47110764_47410206|GENSCAN_predicted_CDS_4|4563_bp
atggtggctctggagccaagcacctgtgcagaatggagctacgccgccgcagtcggcagt
ggaaggcgctcagaaggcagccgaacaggctatctcgggatgcagcttgtggggccgctc
ctgctgctgctcgcctggctggaggccagcggaacgggcgagccatttcagggaggccag
gcctcagctcccctggataaggatgagggaatgtctttaagcttggctgaagaggaaata
aaaacagaacaggaggtggtagagggcatggatatctctactcgctccaaagagcgtttt
agctctcaggagacaaagctttcgagctttcaagatgtcaggttgacatttgtgtccgag
ggtaatgatcctgctgaaagatgctcctacatcaatgggaagtgccatctcgatgccagc
cacactgactgtgcagatccatcaaagcctcagggcctttgcccataccttgaaggtccc
ctccttgccttcctctccttactccccatcaattttaaggctcaaaatgaggatgagttc
tgccttttgtttttgctcatcctgttttactaccaccttgcctgctgctggctcccttct
gatattgtcacctcggccagcagaacaactgcagttcctcgtatttattcacaatcccac
gaaatcaatggctcttcggtgcactgcaccggagactttcagctcagccgagctgctgtt
gagggccccagcaggcttgctgtcgacatcattaaggaaattaaacacccacaaaaacac
aagaagctcccggcctttcagctgcggccctttcccttgagggaggagacaattccctgt
aatggtgctggggtttataggtgtgagccaccgtgcctggctgaagtgtacatgtgttta
aatgagatgctgaaagatgaaaagaaggggtgcatgaacaagagtggggctgatcctggc
tctgcagagagaacagcccagaaaagaaagttccccagccctccacattcttccaatggc
cactcgccgcaggacacatcaacaagccccattaaaaagaaaaagaaacctggcttactg
aacagtaacaataaggagcagaaaattacagtagcagaatgcatcgagacccagagtaaa
gccatgacaatgctcaccattgaacagttatcctacctgctcaagtttgccattcagaaa
atgaaacagccagggacagatgcattccagaagcccgttccattggaacagcaccctgac
tatgcggaatacatcttccatccaatggacctttgtacattggaaaagaatgcgaaaaag
aaaatgtatggctgcacagaagccttcctggctgatgcaaagtggattttgcacaactgc
atcatttataatgggggaaatcacaaattgacgcaaatagcgaaagtagtcatcaaaatc
tgtgaacatgagatgaatgaaatcgaagtatgtccagaatgttatctagctgcttgccaa
aaacgagataactggttttgtgagccttgtaaatacatatttgatgactgctgcgtgcca
gcctgtgtagtggaagctggtgattcaaatgtttctgcccatgtgaaggctgacatccta
gcggggaagaaggatgatacacaaacccttatggttgatggctgtagtctctcagctgtg
actgctctgcagggacctccatctctcacccgtcagacagcgactgaaggtggcttacag
agcatgaaggacggcgtggcctgggttccaataaataattgctacctcatgtctaaagaa
attcctttttctgtgaaaaagactaagagcatcttcaacagtgccatgcaagagatggag
gtttacgtggagaacatccgcaggaagtttggggtttttaattactctccatttaggaca
ccctacacacccaacagccagtatcaaatgctgctcgatcccaccaaccccagcgccggc
actgccaagatagacaagcaggagaaggtcaagctcaactttgacatgacggcatccccc
aagatcctgatgagcaagcctgtgctgagtgggggcacaggccgccggatttccttgtcg
gatatgccgcgctcccccatgagcacaaactcttctgtgcacacgggctccgacgtggag
caggatgctgagaagaaggccacgtcgagccacttcagtgcgagcgaggagtccatggac
ttcctggataagagcacagcttcaccagcctccaccaagacgggacaagcagggagttta
tccggcagcccaaagcccttctctcctcaactgtcagctcctatcacgacgaaaacggac
aaaacctccaccaccggcagcatcctgaatcttaacctggatcgaagcaaagctgagatg
gatttgaaggagctgagcgagtcggtccagcaacagtccacccctgttcctctcatctct
cccaagcgccagattcgtagcaggttccagctgaatcttgacaagaccatagagagttgc
aaagcacaattaggcataaatgaaatctcggaagatgtctatacggccgtagagcacagc
gattcggaggattctgagaagtcagatagtagcgatagtgagtatatcagtgatgatgag
cagaagtctaagaacgagccagaagacacagaggacaaagaaggttgtcagatggacaaa
gagccatctgctgttaaaaaaaagcccaagcctacaaacccagtggagattaaagaggag
ctgaaaagcacgtcaccagccagcgagaaggcagaccctggagcagtcaaggacaaggcc
agccctgagcctgagaaggacttttccgaaaaggcaaaaccttcacctcaccccataaag
gataaactgaagggaaaagatgagacggattccccaacagtccatttgggcctggactct
gattcagagagcgaacttgtcatagatttaggagaagaccattctgggcgggagggtcga
aaaaataagaaggaacccaaagaaccatctcccaaacaggatggtaaaactccaccatcc
acgacggtgggcagccattctcccccggaaacaccggtgctcacccgctcttccgcccaa
acttccgcggctggcgccacagccaccaccagcacgtcctccacggtcaccgtcacggcc
ccggcccccgccgccacaggaagcccagtgaaaaagcagaggccgcttttaccgaaggag
actgccccggccgtgcagcgggtcgtgtggaactcatcaagtaagtttcaaacgtcctcc
caaaagtggcacatgcagaagatgcagcgtcagcagcagcagcagcagcagcaaaaccag
cagcagcagcctcagtcttcccaggggacgagatatcagaccagacaggctgtgaaagct
gtccagcagaaggagatcacacagagcccatccacgtccaccatcaccctggtgaccagc
acacagtcatcgcccctggtcaccagctcggggtccatgagcacccttgtgtcctcagtc
aacgctgacctgcccatcgccactgcctcagctgatgtcgccgctgatattgccaagtac
actagcaaaatgatggatgcaataaaaggaacaatgacagaaatatacaacgatctttct
aaaaacactactggaagcacaatagctgagattcgcaggctgaggatcgagatagagaag
ctccagtggctgcaccagcaagagctctccgaaatgaaacacaacttagagctgaccatg
gcggagatgcggcagagcctggagcaggagcgggaccggctcatcgccgaggtgaagaag
cagctggagttggagaagcagcaggcggtggatgagaccaagaagaagcagtggtgcgcc
aactgcaagaaggaggccatcttttactgctgttggaacaccagctactgtgactacccc
tgccagcaagcccactggcctgagcacatgaagtcctgcacccagtcagctactgctcct
cagcaggaagcggatgctgaggtgaacacagaaacactaaataagtcctcccaggggagc
tcctcgagcacacaatcagcaccttcagaaacggccagcgcctccaaagagaaggagacg
tcagctgagaaaagcaaggagagtggctcggattccatcgtccatgatggctatttctca
agttctctgctctgttttggacctccctgcatctctccctgcgtcaccatccctgggcgc
tcagggctgctcctctgccctctgcagggcctccgtgttagcaaaaggtgtgacaagcaa
cctgcctatgccccaaccaccacagaccaccagccgcaccccaactaccccgcccagaag
tgtaagtatgaacctgtcttacgaaagctgccggggcttcttcctgaccattcccggagt
aataaatccagttggagcagcagtgatgagaagaggggatcgacacgttccgatcacaac
accagtaccagcacgaagagcctcctcccgaaagagtctcggctggacaccttctgggac
tag