GENSCAN 1.0	Date run:  3-Nov-116	Time: 04:28:28

Sequence gi568815586f:27197721_27422452 : 224732 bp : 38.83% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1151   1250  100  1  1   58   90   124 0.972   8.36
 1.02 Term +   9934  10193  260  2  2   73   36   191 0.988   7.13
 1.03 PlyA +  12068  12073    6                               1.05

 2.05 PlyA -  12328  12323    6                               1.05
 2.04 Term -  16744  16269  476  2  2   56   50   231 0.720  10.16
 2.03 Intr -  16969  16858  112  1  1   88  106    15 0.130   2.33
 2.02 Intr -  44729  44597  133  1  1  -14  103   145 0.182   5.53
 2.01 Init -  47022  46838  185  0  2   71   53   165 0.295   8.05
 2.00 Prom -  52020  51981   40                              -4.85

 3.06 PlyA -  52191  52186    6                               1.05
 3.05 Term -  55071  54926  146  1  2   86   48   105 0.616   3.39
 3.04 Intr -  66846  66780   67  0  1   85   94    56 0.077   3.46
 3.03 Intr -  75206  75068  139  1  1   77   56    11 0.009  -3.65
 3.02 Intr -  80325  80184  142  1  1   55   66   112 0.046   4.19
 3.01 Init -  91114  91102   13  1  1   68  100    24 0.315   1.91
 3.00 Prom -  94064  94025   40                              -5.65

 4.00 Prom +  96111  96150   40                              -6.85
 4.01 Init +  98030  98240  211  1  1   81   65    77 0.086   3.69
 4.02 Intr +  99990 100134  145  1  1   92   80    69 0.141   4.92
 4.03 Intr + 104417 104468   52  2  1   47   80    95 0.159   2.59
 4.04 Intr + 110619 110741  123  2  0   61   53   124 0.984   6.06
 4.05 Intr + 111394 111477   84  0  0  123   80    37 0.978   5.50
 4.06 Intr + 114829 114952  124  0  1   34   83   109 0.997   4.24
 4.07 Term + 116784 116950  167  1  2   93   37   163 0.942   8.80
 4.08 PlyA + 117893 117898    6                               1.05

 5.00 Prom + 119269 119308   40                              -7.25
 5.01 Init + 120226 120299   74  0  2   52   92    34 0.139   0.79
 5.02 Intr + 121608 121703   96  0  0   89   95   107 0.998   9.71
 5.03 Intr + 124423 124514   92  1  2   56  110    84 0.998   6.12
 5.04 Term + 124608 124735  128  1  2  112   42    92 0.994   4.46
 5.05 PlyA + 124975 124980    6                               1.05

 6.02 PlyA - 125635 125630    6                               1.05
 6.01 Sngl - 135308 135015  294  2  0  104   42   202 0.812  10.65
 6.00 Prom - 142512 142473   40                              -4.95

 7.00 Prom + 155738 155777   40                              -1.15
 7.01 Init + 156656 156719   64  1  1   68   72    40 0.750   1.76
 7.02 Intr + 170542 170692  151  2  1  110  100   113 0.926  13.00
 7.03 Intr + 172409 172510  102  2  0  104  111    28 0.886   5.07
 7.04 Intr + 182527 182684  158  1  2   76  113   118 0.045  11.83
 7.05 Intr + 187761 187840   80  1  2   89   88     7 0.523  -0.85
 7.06 Intr + 189508 189600   93  0  0   77   68    62 0.503   2.34
 7.07 Intr + 191459 191576  118  1  1   42  106    74 0.493   3.72
 7.08 Intr + 205713 205821  109  1  1   80   80   116 0.773   8.42
 7.09 Term + 207896 208115  220  2  1   20   42   155 0.139  -0.37
 7.10 PlyA + 208329 208334    6                               1.05

 8.00 Prom + 209328 209367   40                              -6.15
 8.01 Sngl + 210605 211348  744  1  0   81   43   286 0.718  19.34
 8.02 PlyA + 211366 211371    6                               1.05

 9.00 Prom + 211669 211708   40                              -9.95
 9.01 Init + 211960 212378  419  0  2   71   53   144 0.134   5.15
 9.02 Intr + 218149 218227   79  1  1   49   84    57 0.156   0.03
 9.03 Intr + 220368 220476  109  2  1   90   89    57 0.655   4.94
 9.04 Term + 222676 222812  137  2  2   58   38   172 0.981   6.40
 9.05 PlyA + 224238 224243    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  98030  98217  188  1  2   81   77    98 0.821   6.58
S.002 Term +  99990 100098  109  0  1   92   43   114 0.813   4.30
S.003 Intr + 120176 120299  124  0  1   41   92    86 0.853   3.02
S.004 Term + 182527 182806  280  1  1   76   44   231 0.928  11.43


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586f:27197721_27422452|GENSCAN_predicted_peptide_1|119_aa
NLSDIGAASAGAQPVEFTAGLSIPRASVAPVPRDSGGQRYVRRGHWVEHLGEYSRTYTLL
FLPPSAWNANEQQLSSDHETSSRVESSTMDGIIDRGRRLANTDDVAEQPNSPDLSYMRR

>gi568815586f:27197721_27422452|GENSCAN_predicted_CDS_1|360_bp
aacctcagtgacattggtgctgcttctgctggtgctcagccagtggagtttactgctggt
ctctccatccccagagcctctgttgctccagtacccagagatagtggtggtcaaagatat
gtcagaagaggtcattgggtggagcatctaggagagtactcacgcacatatactcttctc
ttcctacctccttctgcctggaatgctaacgagcagcagctgtccagtgatcatgaaaca
agctcgagggtagaatccagcactatggacgggattatagacagaggaaggagactggcc
aacactgacgatgttgcagaacaacccaacagccctgatttatcttacatgagaagataa

>gi568815586f:27197721_27422452|GENSCAN_predicted_peptide_2|301_aa
MLRILALGDIGWRARDGSAGATRRGSATFVIVCEAQAGTRSGVLGGRGVEGERSRGQRFL
PGCCLVTCLTEKPTWQGTERDPVNSHQGIQAPSPTTCDELNTANNHVHRLYFTPWKSGKH
TWMGPENHILEGGLWPLPFVCCLALSRQGSSSLQLVLLPYLLCPALAEPRAFMDLRGEEV
RADWSMGGQGQAQKRHHKSPLQSLGLAAQHPDSGLPWPEGGALLGTCRLPPRNLSASCCH
SWPSGSQDFAPRSKQASTAGRSQAAGAGTSEPARAGGPSQAPKSAGMPESAASVWAAAVE
A

>gi568815586f:27197721_27422452|GENSCAN_predicted_CDS_2|906_bp
atgcttcggatcctggctctgggtgacatcggctggagggcacgggacgggagcgctggg
gctacccggagaggatccgcgacatttgttattgtttgtgaagcccaggcggggacccgg
agcggagtgctcgggggccggggagtggaaggagaaaggagcagaggacaaagattcctc
cccggctgctgtcttgtgacctgccttacagagaagcccacatggcaaggaactgagaga
gatccagtcaacagccaccaaggaattcaggcccccagtccaacaacctgtgatgaactg
aatactgccaataatcatgtccacagattatatttcactccctggaaaagtggcaagcac
acgtggatggggcctgaaaaccacattttagaaggaggcttgtggcctttgccttttgtc
tgctgtttggctctcagcagacagggtagctcctctctgcagctagtcctcctgccctac
ctcctctgccctgctctggctgagcccagggcttttatggacctgagaggggaggaagta
cgtgctgattggtccatgggtggccaagggcaggcccagaagaggcaccacaagtcccca
ctccagtccttgggactggcagcccagcacccagactcaggccttccctggcctgaagga
ggggccttactggggacctgccgccttccacccaggaatctgtctgcctcctgctgccat
tcatggccctcaggctctcaggactttgctccgagatccaagcaggcatccacagcaggg
agaagccaggcagcaggggcaggcacttctgagcctgcaagagcagggggtccttcccag
gcgcccaagagtgcagggatgcctgagtctgccgcctcagtttgggcagctgcagtggag
gcctag

>gi568815586f:27197721_27422452|GENSCAN_predicted_peptide_3|168_aa
MGNEGYSKPESDPTLLIHDLKSPSSTGLASIKTPPSFLTSRKFTSPLGRPSIPHLTAKVF
STYQRPGKRLKSIFLFPTHTENNAYNQSSQNLLSSSRQLFESVDAEPMNMESQLHLIMPK
GFASIKNINGSYTCNSVLKFSTLATKIEKVYSVCLDKSRHMENILNQI

>gi568815586f:27197721_27422452|GENSCAN_predicted_CDS_3|507_bp
atgggtaacgaaggttattcaaaaccagaatctgatcctactctccttatacatgacctg
aaaagtccctcctccactggacttgcatccataaaaactccacccagtttcctgacatca
cggaaatttactagtccacttggaagacctagtattccacatttaactgccaaagttttc
agtacttatcagagacctggcaaaaggttaaagagcatttttctgttcccaacccacaca
gaaaacaatgcctacaatcaatcatcacagaatctactgtcaagtagcaggcagttgttt
gaatcagtggatgcagaacccatgaatatggagagtcaattgcatttaattatgcccaaa
ggatttgccagtatcaagaatatcaatgggtcatatacatgcaattcagtactaaaattt
tccactctagccacaaaaatagaaaaagtctattctgtttgtctagataagagtcgacat
atggagaacatcctcaaccagatctga

>gi568815586f:27197721_27422452|GENSCAN_predicted_peptide_4|301_aa
MHQKNEKCFASSAEHVREVTTAVRLQLNWAIKDQQIPAETYPAVDITASGIGHGRAWRHE
RARYVGKRMSVSVTMAMTAGTTTTFPMSNHTRERVTVAKLTLENFYSNLILQHEERETRQ
KKLEVAMEEEGLADEEKKLRRSQHARKETEFLRLKRTRLGLDDFESLKVIGRGAFGEVRL
VQKKDTGHIYAMKILRKSDMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLI
MEFLPGGDMMTLLMKKDTLTEEETQFYISETVLAIDAIHQLGFIHRDIKPDNLLLDAKAC
E

>gi568815586f:27197721_27422452|GENSCAN_predicted_CDS_4|906_bp
atgcaccaaaaaaatgagaaatgctttgcctcttctgcagagcatgttagagaagtcacc
acagcagtaagacttcagctaaactgggccataaaggatcagcagattcctgcagagaca
tatcctgcagtggatataactgcttcagggataggtcatggaagagcttggaggcatgaa
agagctaggtatgttgggaaaagaatgagtgtttccgttactatggcaatgacggcaggg
actacaacaacctttcctatgagcaaccatacccgggaaagagtgactgtagccaagctc
acattggagaatttttatagcaacctaattttacagcatgaagagagagaaaccaggcag
aagaaattagaagtggccatggaagaagaaggattagcagatgaagagaaaaagttacgt
cgatcacaacacgctcgcaaagaaacagagttcttacggctcaaaaggaccagacttggc
ttggatgactttgagtctctgaaagttataggaagaggagcttttggagaggtgcggttg
gtccagaagaaagatacaggccatatctatgcaatgaagatattgagaaagtctgatatg
cttgaaaaagagcaggtggcccatatccgagcagaaagagatattttggtagaagcagat
ggtgcctgggtggtgaagatgttttacagttttcaggataagaggaatctttatctaatc
atggaatttctccctggaggtgacatgatgacattgctaatgaagaaagacaccttgaca
gaagaggaaacacagttctacatttcagagactgttctggcaatagatgcgatccaccag
ttgggtttcatccatcgggatattaagccagacaaccttttattggatgccaaggcatgt
gaataa

>gi568815586f:27197721_27422452|GENSCAN_predicted_peptide_5|129_aa
MNWKETLVFPPEVPISEKAKDLILRFCIDSENRIGNSGVEEIKGHPFFEGVDWEHIRERP
AAIPIEIKSIDDTSNFDDFPESDILQPVPNTTEPDYKSKDWVFLNYTYKRFEGLTQRGSI
PTYMKAGKL

>gi568815586f:27197721_27422452|GENSCAN_predicted_CDS_5|390_bp
atgaactggaaagaaactctggtatttcctccagaggtacctatatctgagaaagccaag
gacttaattctcagattttgtattgattctgaaaacagaattggaaatagtggagtagaa
gaaataaaaggtcatcccttttttgaaggtgtcgactgggagcacataagggaaaggcca
gcagcaatccctatagaaatcaaaagcattgatgatacttcaaattttgatgacttccct
gaatctgatattttacaaccagtgccaaataccacagaaccggactacaaatccaaagac
tgggtttttctcaattatacctataaaaggtttgaagggttgactcaacgtggctctatc
cccacctacatgaaagctgggaagttatga

>gi568815586f:27197721_27422452|GENSCAN_predicted_peptide_6|97_aa
MEEPRARPAPAQAAALEQGSGDWRALPGAAAAATAARRRARDAAPQPGRQQLLSMRTGAS
RPPLWAPRGFPAGKRPGPRAESLRTPPRRALPRAAKH

>gi568815586f:27197721_27422452|GENSCAN_predicted_CDS_6|294_bp
atggaggagccccgggcccgccctgccccggcccaggcggcggctctggagcagggaagc
ggggactggcgggccctgccgggtgccgcggcggccgccaccgcagcccgtaggcgcgca
cgggacgccgccccgcagcccggccggcagcagctactgagcatgcggactggagccagc
cgcccgccgctctgggcgccgcggggcttcccggcgggaaagagacccgggccaagggcg
gagtcgctgcggacaccgccccgccgagccctcccgcgagcagcaaagcactaa

>gi568815586f:27197721_27422452|GENSCAN_predicted_peptide_7|364_aa
MDTKRGTIDIGAYLKAEGGKKGKVLREENQCIAPVVSSRVSPGTRPTAMGSFSSHMTEFP
RKRKGSDSDPSQSGIMTEKVVEKLSQNPLTYLLSTRIEISASSGSREAHSQTEKRRRDKM
NNLIEELSAMIPQCNPMARKLDKLTVLRMAVQHLRSLKGLTNSYVGSNYRPSFLQDNELR
HLILKTAEGFLFVVGCERGKILFVSKSVSKILNYDQASLTGQSLFDFLHPKDVAKVKEQL
SSFDISPREKLIDAKKSSRQSCMSVPGMSTGTVLGAGSIGTDIANEILDLQRPKVDKTTK
MGKKQSRKTGNSKNQSAFPPSKERSSLPAMEQSWTENEFDERRRLQMIKLLRAKGGSLNP
WQRS

>gi568815586f:27197721_27422452|GENSCAN_predicted_CDS_7|1095_bp
atggacacaaaaagaggaacaatagacatcggggcctacttgaaggcagagggtgggaag
aagggtaaagtgttgagagaggagaaccagtgcattgctcctgtggtttccagccgcgtg
agtccagggacaagaccaacagctatggggtctttcagctcacacatgacagagtttcca
cgaaaacgcaaaggaagtgattcagacccatcccagtcaggaatcatgacagaaaaagtg
gtggaaaagctttctcagaatccccttacctatcttctttcaacaaggatagaaatatca
gcctccagtggcagcagagaagctcatagccaaactgaaaagcggaggagagataaaatg
aataacctgattgaagaactgtctgcaatgatccctcagtgcaaccccatggcgcgtaaa
ctggacaaacttacagttttaagaatggctgttcaacacttgagatctttaaaaggcttg
acaaattcttatgtgggaagtaattatagaccatcatttcttcaggataatgagctcaga
catttaatccttaagactgcagaaggcttcttatttgtggttggatgtgaaagaggaaaa
attctcttcgtttctaagtcagtctccaaaatacttaattatgatcaggctagtttgact
ggacaaagcttatttgacttcttacatccaaaagatgttgccaaagtaaaggaacaactt
tcttcttttgatatttcaccaagagaaaagctaatagatgccaaaaaatcctctagacag
tcctgtatgagtgtacctggaatgtctactggaacagtacttggtgctggtagtattgga
acagatattgcaaatgaaattctggatttacagagaccaaaggtagataaaaccacaaag
atggggaaaaaacagagcagaaaaactggaaactctaaaaatcagagcgcctttcctcct
tcaaaggaacgcagctccttaccagcaatggaacaaagctggacagagaatgagtttgat
gagagaagaaggcttcagatgatcaaactactccgagctaaaggaggaagtttgaaccca
tggcaaagaagttaa

>gi568815586f:27197721_27422452|GENSCAN_predicted_peptide_8|247_aa
MDTKILNKILANQIQQHIKKLIYHDQVGFIPGMQGWFNIRKSINVIQHINRTNDKNHMIN
SIDAEKTFDKIQQRFMLKTLNKLDIDGTYLKIIRAIYDKPIANIILNGQKLEAFPLKTGT
RQGCRLSPLLYNIVLKVLARAIRKEKEIKGIQLGEEEVKLSLFADDMIVYLENPIVSAQN
RLKLISNFSKVSGYKINVQKSQAFLYNNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV
KDLFKEN

>gi568815586f:27197721_27422452|GENSCAN_predicted_CDS_8|744_bp
atggatacaaaaatcctcaataaaatactggcaaaccaaatccagcagcacatcaaaaag
cttatctaccatgatcaagtgggcttcatccctgggatgcaaggctggttcaacatacgc
aaatcaataaatgtaatccagcatataaacagaaccaatgacaaaaaccacatgattaac
tcaatagatgcagaaaagacctttgacaaaattcaacaacgcttcatgctaaaaactctc
aataaattggatattgatgggacatatctcaaaataataagagctatctatgacaaaccc
atagccaatatcatactgaatgggcaaaaactggaagcattccctttgaaaactggcaca
agacagggatgccgtctctcaccactcctatacaacatagtgttgaaagttctggccagg
gcaataaggaaggagaaggaaataaaaggtattcaattaggagaagaggaagtcaaattg
tccctgtttgcagatgacatgattgtatatctagaaaaccccattgtctcagcccaaaat
cgccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaa
tcacaagcattcttatacaacaataacagacaaacagagagccaaatcatgagtgaactc
ccatttacaattgcttcaaagagaataaaatacctaggaatccaacttacaagggatgtg
aaggacctcttcaaggagaactag

>gi568815586f:27197721_27422452|GENSCAN_predicted_peptide_9|247_aa
MGKDFMSKTPKAMATKAKIDKWDLIKLKSFCTAKETTIRVNRQPTEWEKIFAIYSSDKGL
ISRIYNELQQIYKKKTNNPIKKWAKDMNRYFSKEDIYAAKRHMKKCSSSLAIRQMQIKTT
MRYHLTPVRMAIIKKSGNNRLQSSSYLDDSSPTGLMKDTHTVNCRSMSNKELFPPSPSEM
GELEATRQNQSTVAVHSHEPLLSDGAQLDFDALCDNDDTAMAAFMNYLEAEGGLGDPGDF
SDIQWTL

>gi568815586f:27197721_27422452|GENSCAN_predicted_CDS_9|744_bp
atgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgac
aaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtg
aacaggcaacctacagaatgggagaaaatttttgcaatctactcatcggacaaagggcta
atatccagaatctacaatgaactccaacaaatttacaagaaaaaaacaaacaaccccatt
aaaaagtgggcaaaggatatgaacagatacttctcaaaagaagacatttatgcagccaaa
agacacatgaaaaaatgctcatcatcactggccatcagacaaatgcaaatcaaaaccaca
atgagataccatctcacaccagttagaatggcgatcattaaaaagtcaggaaacaacagg
ttacagtcttcttcataccttgatgattcgagtccaacaggtttaatgaaagatactcat
actgtaaactgcaggagtatgtcaaataaggagttgtttccaccaagtccttctgaaatg
ggggagctagaggctaccaggcaaaaccagagtactgttgctgtccacagccatgagcca
ctcctcagtgatggtgcacagttggatttcgatgccctatgtgacaatgatgacacagcc
atggctgcatttatgaattacttagaagcagaggggggcctgggagaccctggggacttc
agtgacatccagtggaccctctag