Result of FASTA (ccds) for pF1KSDA0958
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0958, 424 aa
  1>>>pF1KSDA0958 424 - 424 aa - 424 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3288+/-0.00083; mu= 17.2517+/- 0.050
 mean_var=65.2540+/-13.493, 0's: 0 Z-trim(107.2): 21  B-trim: 383 in 1/48
 Lambda= 0.158771
 statistics sampled from 9397 (9405) to 9397 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.289), width:  16
 Scan time:  2.990

The best scores are:                                      opt bits E(32554)
CCDS13721.1 POFUT2 gene_id:23275|Hs108|chr21       ( 424) 2940 682.2 2.6e-196
CCDS13719.1 POFUT2 gene_id:23275|Hs108|chr21       ( 429) 2624 609.8 1.6e-174


>>CCDS13721.1 POFUT2 gene_id:23275|Hs108|chr21            (424 aa)
 initn: 2940 init1: 2940 opt: 2940  Z-score: 3637.9  bits: 682.2 E(32554): 2.6e-196
Smith-Waterman score: 2940; 100.0% identity (100.0% similar) in 424 aa overlap (1-424:1-424)

               10        20        30        40        50        60
pF1KSD MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD LYKDGGVAIIDQWICAHARCLPTSLSAESGSGGFQRFFCPKYSVSEQMVACVHSGHFHTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LYKDGGVAIIDQWICAHARCLPTSLSAESGSGGFQRFFCPKYSVSEQMVACVHSGHFHTV
              370       380       390       400       410       420

           
pF1KSD CLLV
       ::::
CCDS13 CLLV
           

>>CCDS13719.1 POFUT2 gene_id:23275|Hs108|chr21            (429 aa)
 initn: 2620 init1: 2620 opt: 2624  Z-score: 3246.7  bits: 609.8 E(32554): 1.6e-174
Smith-Waterman score: 2624; 98.2% identity (99.0% similar) in 390 aa overlap (1-389:1-390)

               10        20        30        40        50        60
pF1KSD MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKLGSALGGPYLGVHLRRKDFIW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELE
              310       320       330       340       350       360

              370       380        390       400       410         
pF1KSD LYKDGGVAIIDQWICAHARC-LPTSLSAESGSGGFQRFFCPKYSVSEQMVACVHSGHFHT
       :::::::::::::::::::  . ::.:. :                              
CCDS13 LYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCGDQEKACE
              370       380       390       400       410       420




424 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:24:49 2016 done: Thu Nov  3 04:24:50 2016
 Total Scan time:  2.990 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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