Result of FASTA (ccds) for pF1KSDA0893
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0893, 919 aa
  1>>>pF1KSDA0893 919 - 919 aa - 919 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4623+/-0.00118; mu= 6.1651+/- 0.070
 mean_var=181.8813+/-38.462, 0's: 0 Z-trim(107.9): 121  B-trim: 403 in 1/51
 Lambda= 0.095100
 statistics sampled from 9768 (9896) to 9768 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.304), width:  16
 Scan time:  3.720

The best scores are:                                      opt bits E(32554)
CCDS44187.1 WDR47 gene_id:22911|Hs108|chr1         ( 919) 6211 865.6       0
CCDS30787.1 WDR47 gene_id:22911|Hs108|chr1         ( 920) 6199 864.0       0
CCDS44186.1 WDR47 gene_id:22911|Hs108|chr1         ( 927) 6175 860.7       0


>>CCDS44187.1 WDR47 gene_id:22911|Hs108|chr1              (919 aa)
 initn: 6211 init1: 6211 opt: 6211  Z-score: 4617.3  bits: 865.6 E(32554):    0
Smith-Waterman score: 6211; 100.0% identity (100.0% similar) in 919 aa overlap (1-919:1-919)

               10        20        30        40        50        60
pF1KSD MTAEETVNVKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MTAEETVNVKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD WDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMSAEDEPQHLEFTMQEAVQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMSAEDEPQHLEFTMQEAVQC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEACVMVAEFIPADR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEACVMVAEFIPADR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD KLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD DLSLLSWLQNLPSSVFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DLSLLSWLQNLPSSVFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD MLENTECHSIYEESPERDTPVDAQRPIGSEILGQSSVSEKEPANGAQNPGPAKQEKNELR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MLENTECHSIYEESPERDTPVDAQRPIGSEILGQSSVSEKEPANGAQNPGPAKQEKNELR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD DSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRSI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD QKLGELNIGMDGLGNEVSALNQQCNGSKGNGSNGSSVTSFTTPPQDSSQRLTHDASNIHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QKLGELNIGMDGLGNEVSALNQQCNGSKGNGSNGSSVTSFTTPPQDSSQRLTHDASNIHT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD STPRNPGSTNHIPFLEESPCGSQISSEHSVIKPPLGDSPGSLSRSKGEEDDKSKKQFVCI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 STPRNPGSTNHIPFLEESPCGSQISSEHSVIKPPLGDSPGSLSRSKGEEDDKSKKQFVCI
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD NILEDTQAVRAVAFHPAGGLYAVGSNSKTLRVCAYPDVIDPSAHETPKQPVVRFKRNKHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NILEDTQAVRAVAFHPAGGLYAVGSNSKTLRVCAYPDVIDPSAHETPKQPVVRFKRNKHH
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD KGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLEFSMHDGTIRDLAFMEGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLEFSMHDGTIRDLAFMEGP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD ESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRF
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD WDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD HSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPIMVVGEHKDKVIQCRWHTQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPIMVVGEHKDKVIQCRWHTQD
              850       860       870       880       890       900

              910         
pF1KSD LSFLSSSADRTVTLWTYNG
       :::::::::::::::::::
CCDS44 LSFLSSSADRTVTLWTYNG
              910         

>>CCDS30787.1 WDR47 gene_id:22911|Hs108|chr1              (920 aa)
 initn: 3689 init1: 3689 opt: 6199  Z-score: 4608.4  bits: 864.0 E(32554):    0
Smith-Waterman score: 6199; 99.9% identity (99.9% similar) in 920 aa overlap (1-919:1-920)

               10        20        30        40        50        60
pF1KSD MTAEETVNVKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MTAEETVNVKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD WDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMSAEDEPQHLEFTMQEAVQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 WDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMSAEDEPQHLEFTMQEAVQC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEACVMVAEFIPADR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEACVMVAEFIPADR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD KLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD DLSLLSWLQNLPSSVFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DLSLLSWLQNLPSSVFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSL
              310       320       330       340       350       360

              370        380       390       400       410         
pF1KSD MLENTECHSIYEESPER-DTPVDAQRPIGSEILGQSSVSEKEPANGAQNPGPAKQEKNEL
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS30 MLENTECHSIYEESPERSDTPVDAQRPIGSEILGQSSVSEKEPANGAQNPGPAKQEKNEL
              370       380       390       400       410       420

     420       430       440       450       460       470         
pF1KSD RDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRS
              430       440       450       460       470       480

     480       490       500       510       520       530         
pF1KSD IQKLGELNIGMDGLGNEVSALNQQCNGSKGNGSNGSSVTSFTTPPQDSSQRLTHDASNIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IQKLGELNIGMDGLGNEVSALNQQCNGSKGNGSNGSSVTSFTTPPQDSSQRLTHDASNIH
              490       500       510       520       530       540

     540       550       560       570       580       590         
pF1KSD TSTPRNPGSTNHIPFLEESPCGSQISSEHSVIKPPLGDSPGSLSRSKGEEDDKSKKQFVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TSTPRNPGSTNHIPFLEESPCGSQISSEHSVIKPPLGDSPGSLSRSKGEEDDKSKKQFVC
              550       560       570       580       590       600

     600       610       620       630       640       650         
pF1KSD INILEDTQAVRAVAFHPAGGLYAVGSNSKTLRVCAYPDVIDPSAHETPKQPVVRFKRNKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 INILEDTQAVRAVAFHPAGGLYAVGSNSKTLRVCAYPDVIDPSAHETPKQPVVRFKRNKH
              610       620       630       640       650       660

     660       670       680       690       700       710         
pF1KSD HKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLEFSMHDGTIRDLAFMEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 HKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLEFSMHDGTIRDLAFMEG
              670       680       690       700       710       720

     720       730       740       750       760       770         
pF1KSD PESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVR
              730       740       750       760       770       780

     780       790       800       810       820       830         
pF1KSD FWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 FWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYH
              790       800       810       820       830       840

     840       850       860       870       880       890         
pF1KSD PHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPIMVVGEHKDKVIQCRWHTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPIMVVGEHKDKVIQCRWHTQ
              850       860       870       880       890       900

     900       910         
pF1KSD DLSFLSSSADRTVTLWTYNG
       ::::::::::::::::::::
CCDS30 DLSFLSSSADRTVTLWTYNG
              910       920

>>CCDS44186.1 WDR47 gene_id:22911|Hs108|chr1              (927 aa)
 initn: 4389 init1: 3689 opt: 6175  Z-score: 4590.6  bits: 860.7 E(32554):    0
Smith-Waterman score: 6175; 99.1% identity (99.1% similar) in 927 aa overlap (1-919:1-927)

               10        20        30        40        50        60
pF1KSD MTAEETVNVKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MTAEETVNVKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQ
               10        20        30        40        50        60

               70        80        90       100              110   
pF1KSD WDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMSAEDEPQH-------LEFT
       :::::::::::::::::::::::::::::::::::::::::::::::::       ::::
CCDS44 WDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMSAEDEPQHVRFLFLKLEFT
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KSD MQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEACVMVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEACVMVA
              130       140       150       160       170       180

           180       190       200       210       220       230   
pF1KSD EFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLC
              190       200       210       220       230       240

           240       250       260       270       280       290   
pF1KSD GNGCDDLDLSLLSWLQNLPSSVFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GNGCDDLDLSLLSWLQNLPSSVFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSP
              250       260       270       280       290       300

           300       310       320       330       340       350   
pF1KSD YPSSPMRRPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YPSSPMRRPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANFHYPGV
              310       320       330       340       350       360

           360       370        380       390       400       410  
pF1KSD QNLSRSLMLENTECHSIYEESPER-DTPVDAQRPIGSEILGQSSVSEKEPANGAQNPGPA
       :::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
CCDS44 QNLSRSLMLENTECHSIYEESPERSDTPVDAQRPIGSEILGQSSVSEKEPANGAQNPGPA
              370       380       390       400       410       420

            420       430       440       450       460       470  
pF1KSD KQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLT
              430       440       450       460       470       480

            480       490       500       510       520       530  
pF1KSD EQFLNRSIQKLGELNIGMDGLGNEVSALNQQCNGSKGNGSNGSSVTSFTTPPQDSSQRLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EQFLNRSIQKLGELNIGMDGLGNEVSALNQQCNGSKGNGSNGSSVTSFTTPPQDSSQRLT
              490       500       510       520       530       540

            540       550       560       570       580       590  
pF1KSD HDASNIHTSTPRNPGSTNHIPFLEESPCGSQISSEHSVIKPPLGDSPGSLSRSKGEEDDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HDASNIHTSTPRNPGSTNHIPFLEESPCGSQISSEHSVIKPPLGDSPGSLSRSKGEEDDK
              550       560       570       580       590       600

            600       610       620       630       640       650  
pF1KSD SKKQFVCINILEDTQAVRAVAFHPAGGLYAVGSNSKTLRVCAYPDVIDPSAHETPKQPVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SKKQFVCINILEDTQAVRAVAFHPAGGLYAVGSNSKTLRVCAYPDVIDPSAHETPKQPVV
              610       620       630       640       650       660

            660       670       680       690       700       710  
pF1KSD RFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLEFSMHDGTIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLEFSMHDGTIR
              670       680       690       700       710       720

            720       730       740       750       760       770  
pF1KSD DLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASG
              730       740       750       760       770       780

            780       790       800       810       820       830  
pF1KSD SQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGG
              790       800       810       820       830       840

            840       850       860       870       880       890  
pF1KSD RMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPIMVVGEHKDKVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPIMVVGEHKDKVI
              850       860       870       880       890       900

            900       910         
pF1KSD QCRWHTQDLSFLSSSADRTVTLWTYNG
       :::::::::::::::::::::::::::
CCDS44 QCRWHTQDLSFLSSSADRTVTLWTYNG
              910       920       




919 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:00:20 2016 done: Thu Nov  3 04:00:21 2016
 Total Scan time:  3.720 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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