Result of FASTA (omim) for pF1KSDA0885
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0885, 798 aa
  1>>>pF1KSDA0885 798 - 798 aa - 798 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4676+/-0.00043; mu= 19.5419+/- 0.027
 mean_var=65.0452+/-13.260, 0's: 0 Z-trim(109.4): 22  B-trim: 1238 in 2/54
 Lambda= 0.159025
 statistics sampled from 17518 (17537) to 17518 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.555), E-opt: 0.2 (0.206), width:  16
 Scan time: 11.290

The best scores are:                                      opt bits E(85289)
NP_001007554 (OMIM: 191510) cold shock domain-cont ( 798) 5300 1225.5       0
NP_001229821 (OMIM: 191510) cold shock domain-cont ( 798) 5300 1225.5       0
NP_001229820 (OMIM: 191510) cold shock domain-cont ( 844) 5300 1225.5       0
NP_009089 (OMIM: 191510) cold shock domain-contain ( 767) 4395 1017.8       0
NP_001229822 (OMIM: 191510) cold shock domain-cont ( 767) 4395 1017.8       0
NP_001123995 (OMIM: 191510) cold shock domain-cont ( 813) 4395 1017.9       0


>>NP_001007554 (OMIM: 191510) cold shock domain-containi  (798 aa)
 initn: 5300 init1: 5300 opt: 5300  Z-score: 6564.4  bits: 1225.5 E(85289):    0
Smith-Waterman score: 5300; 100.0% identity (100.0% similar) in 798 aa overlap (1-798:1-798)

               10        20        30        40        50        60
pF1KSD MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQVVCAVPHNLESKSPAAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQVVCAVPHNLESKSPAAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD
              730       740       750       760       770       780

              790        
pF1KSD NSMGFGAERKIRQAGVID
       ::::::::::::::::::
NP_001 NSMGFGAERKIRQAGVID
              790        

>>NP_001229821 (OMIM: 191510) cold shock domain-containi  (798 aa)
 initn: 5300 init1: 5300 opt: 5300  Z-score: 6564.4  bits: 1225.5 E(85289):    0
Smith-Waterman score: 5300; 100.0% identity (100.0% similar) in 798 aa overlap (1-798:1-798)

               10        20        30        40        50        60
pF1KSD MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQVVCAVPHNLESKSPAAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQVVCAVPHNLESKSPAAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD
              730       740       750       760       770       780

              790        
pF1KSD NSMGFGAERKIRQAGVID
       ::::::::::::::::::
NP_001 NSMGFGAERKIRQAGVID
              790        

>>NP_001229820 (OMIM: 191510) cold shock domain-containi  (844 aa)
 initn: 5300 init1: 5300 opt: 5300  Z-score: 6564.0  bits: 1225.5 E(85289):    0
Smith-Waterman score: 5300; 100.0% identity (100.0% similar) in 798 aa overlap (1-798:47-844)

                                             10        20        30
pF1KSD                               MSFDPNLLHNNGHNGYPNGTSAALRETGVI
                                     ::::::::::::::::::::::::::::::
NP_001 APPSLSLPLSSSSTSSGTKKQKRTPTYQRSMSFDPNLLHNNGHNGYPNGTSAALRETGVI
         20        30        40        50        60        70      

               40        50        60        70        80        90
pF1KSD EKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKI
         80        90       100       110       120       130      

              100       110       120       130       140       150
pF1KSD KQEILPEERMNGQVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLTYTPEDVEGNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KQEILPEERMNGQVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLTYTPEDVEGNV
        140       150       160       170       180       190      

              160       170       180       190       200       210
pF1KSD QLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIF
        200       210       220       230       240       250      

              220       230       240       250       260       270
pF1KSD FHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKV
        260       270       280       290       300       310      

              280       290       300       310       320       330
pF1KSD IPKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLER
        320       330       340       350       360       370      

              340       350       360       370       380       390
pF1KSD ATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQLHIADE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQLHIADE
        380       390       400       410       420       430      

              400       410       420       430       440       450
pF1KSD VEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGK
        440       450       460       470       480       490      

              460       470       480       490       500       510
pF1KSD EKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLL
        500       510       520       530       540       550      

              520       530       540       550       560       570
pF1KSD GRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGK
        560       570       580       590       600       610      

              580       590       600       610       620       630
pF1KSD GNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGDMKGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGDMKGE
        620       630       640       650       660       670      

              640       650       660       670       680       690
pF1KSD VYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINY
        680       690       700       710       720       730      

              700       710       720       730       740       750
pF1KSD EVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRP
        740       750       760       770       780       790      

              760       770       780       790        
pF1KSD DRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID
        800       810       820       830       840    

>>NP_009089 (OMIM: 191510) cold shock domain-containing   (767 aa)
 initn: 4391 init1: 4391 opt: 4395  Z-score: 5442.5  bits: 1017.8 E(85289):    0
Smith-Waterman score: 5009; 96.1% identity (96.1% similar) in 798 aa overlap (1-798:1-767)

               10        20        30        40        50        60
pF1KSD MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQVVCAVPHNLESKSPAAP
       :::::::::::::::::::::::::::::::::::::::::::                 
NP_009 QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQ-----------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KSD GQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK
                     ::::::::::::::::::::::::::::::::::::::::::::::
NP_009 --------------EVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK
                         110       120       130       140         

              190       200       210       220       230       240
pF1KSD KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE
     150       160       170       180       190       200         

              250       260       270       280       290       300
pF1KSD VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG
     210       220       230       240       250       260         

              310       320       330       340       350       360
pF1KSD DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF
     270       280       290       300       310       320         

              370       380       390       400       410       420
pF1KSD GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
     330       340       350       360       370       380         

              430       440       450       460       470       480
pF1KSD HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
     390       400       410       420       430       440         

              490       500       510       520       530       540
pF1KSD TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK
     450       460       470       480       490       500         

              550       560       570       580       590       600
pF1KSD EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK
     510       520       530       540       550       560         

              610       620       630       640       650       660
pF1KSD VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG
     570       580       590       600       610       620         

              670       680       690       700       710       720
pF1KSD QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS
     630       640       650       660       670       680         

              730       740       750       760       770       780
pF1KSD VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD
     690       700       710       720       730       740         

              790        
pF1KSD NSMGFGAERKIRQAGVID
       ::::::::::::::::::
NP_009 NSMGFGAERKIRQAGVID
     750       760       

>>NP_001229822 (OMIM: 191510) cold shock domain-containi  (767 aa)
 initn: 4391 init1: 4391 opt: 4395  Z-score: 5442.5  bits: 1017.8 E(85289):    0
Smith-Waterman score: 5009; 96.1% identity (96.1% similar) in 798 aa overlap (1-798:1-767)

               10        20        30        40        50        60
pF1KSD MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQVVCAVPHNLESKSPAAP
       :::::::::::::::::::::::::::::::::::::::::::                 
NP_001 QDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNGQ-----------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KSD GQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK
                     ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 --------------EVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLK
                         110       120       130       140         

              190       200       210       220       230       240
pF1KSD KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKE
     150       160       170       180       190       200         

              250       260       270       280       290       300
pF1KSD VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFG
     210       220       230       240       250       260         

              310       320       330       340       350       360
pF1KSD DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGF
     270       280       290       300       310       320         

              370       380       390       400       410       420
pF1KSD GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFIKCVDRDVRMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
     330       340       350       360       370       380         

              430       440       450       460       470       480
pF1KSD HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGIIAYDDCGVKLTIAFQAKDVEGS
     390       400       410       420       430       440         

              490       500       510       520       530       540
pF1KSD TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSPQIGDKVEFSISDKQRPGQQVATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDK
     450       460       470       480       490       500         

              550       560       570       580       590       600
pF1KSD EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGK
     510       520       530       540       550       560         

              610       620       630       640       650       660
pF1KSD VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLG
     570       580       590       600       610       620         

              670       680       690       700       710       720
pF1KSD QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFS
     630       640       650       660       670       680         

              730       740       750       760       770       780
pF1KSD VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPD
     690       700       710       720       730       740         

              790        
pF1KSD NSMGFGAERKIRQAGVID
       ::::::::::::::::::
NP_001 NSMGFGAERKIRQAGVID
     750       760       

>>NP_001123995 (OMIM: 191510) cold shock domain-containi  (813 aa)
 initn: 4391 init1: 4391 opt: 4395  Z-score: 5442.1  bits: 1017.9 E(85289):    0
Smith-Waterman score: 5009; 96.1% identity (96.1% similar) in 798 aa overlap (1-798:47-813)

                                             10        20        30
pF1KSD                               MSFDPNLLHNNGHNGYPNGTSAALRETGVI
                                     ::::::::::::::::::::::::::::::
NP_001 APPSLSLPLSSSSTSSGTKKQKRTPTYQRSMSFDPNLLHNNGHNGYPNGTSAALRETGVI
         20        30        40        50        60        70      

               40        50        60        70        80        90
pF1KSD EKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKI
         80        90       100       110       120       130      

              100       110       120       130       140       150
pF1KSD KQEILPEERMNGQVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLTYTPEDVEGNV
       :::::::::::::                               ::::::::::::::::
NP_001 KQEILPEERMNGQ-------------------------------EVFYLTYTPEDVEGNV
        140                                      150       160     

              160       170       180       190       200       210
pF1KSD QLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIF
         170       180       190       200       210       220     

              220       230       240       250       260       270
pF1KSD FHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKV
         230       240       250       260       270       280     

              280       290       300       310       320       330
pF1KSD IPKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLER
         290       300       310       320       330       340     

              340       350       360       370       380       390
pF1KSD ATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQLHIADE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQLHIADE
         350       360       370       380       390       400     

              400       410       420       430       440       450
pF1KSD VEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGK
         410       420       430       440       450       460     

              460       470       480       490       500       510
pF1KSD EKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVRLL
         470       480       490       500       510       520     

              520       530       540       550       560       570
pF1KSD GRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGK
         530       540       550       560       570       580     

              580       590       600       610       620       630
pF1KSD GNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGDMKGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGDMKGE
         590       600       610       620       630       640     

              640       650       660       670       680       690
pF1KSD VYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINY
         650       660       670       680       690       700     

              700       710       720       730       740       750
pF1KSD EVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRP
         710       720       730       740       750       760     

              760       770       780       790        
pF1KSD DRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID
         770       780       790       800       810   




798 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:57:18 2016 done: Thu Nov  3 03:57:19 2016
 Total Scan time: 11.290 Total Display time:  0.160

Function used was FASTA [36.3.4 Apr, 2011]
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