Result of FASTA (ccds) for pF1KSDA0860
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0860, 541 aa
  1>>>pF1KSDA0860 541 - 541 aa - 541 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7589+/-0.000895; mu= 12.8951+/- 0.054
 mean_var=135.5840+/-27.953, 0's: 0 Z-trim(110.4): 23  B-trim: 0 in 0/54
 Lambda= 0.110146
 statistics sampled from 11576 (11585) to 11576 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.356), width:  16
 Scan time:  3.610

The best scores are:                                      opt bits E(32554)
CCDS13046.1 UBOX5 gene_id:22888|Hs108|chr20        ( 541) 3695 598.8 5.1e-171
CCDS13047.1 UBOX5 gene_id:22888|Hs108|chr20        ( 487) 2832 461.7 9.1e-130


>>CCDS13046.1 UBOX5 gene_id:22888|Hs108|chr20             (541 aa)
 initn: 3695 init1: 3695 opt: 3695  Z-score: 3183.7  bits: 598.8 E(32554): 5.1e-171
Smith-Waterman score: 3695; 100.0% identity (100.0% similar) in 541 aa overlap (1-541:1-541)

               10        20        30        40        50        60
pF1KSD MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTGP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LSHEQKLSQSLEIALASTLGSMPSFTARLTRGQLQHLGTRGSNTSWRPGTGSEQPGSILG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LSHEQKLSQSLEIALASTLGSMPSFTARLTRGQLQHLGTRGSNTSWRPGTGSEQPGSILG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD PECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH
              490       500       510       520       530       540

        
pF1KSD F
       :
CCDS13 F
        

>>CCDS13047.1 UBOX5 gene_id:22888|Hs108|chr20             (487 aa)
 initn: 2832 init1: 2832 opt: 2832  Z-score: 2443.2  bits: 461.7 E(32554): 9.1e-130
Smith-Waterman score: 3225; 90.0% identity (90.0% similar) in 541 aa overlap (1-541:1-487)

               10        20        30        40        50        60
pF1KSD MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS13 SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCST--
              370       380       390       400       410          

              430       440       450       460       470       480
pF1KSD LSHEQKLSQSLEIALASTLGSMPSFTARLTRGQLQHLGTRGSNTSWRPGTGSEQPGSILG
                                                           ::::::::
CCDS13 ----------------------------------------------------EQPGSILG
                                                          420      

              490       500       510       520       530       540
pF1KSD PECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH
        430       440       450       460       470       480      

        
pF1KSD F
       :
CCDS13 F
        




541 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:49:35 2016 done: Thu Nov  3 03:49:35 2016
 Total Scan time:  3.610 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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