Result of FASTA (omim) for pF1KSDA0794
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0794, 489 aa
  1>>>pF1KSDA0794 489 - 489 aa - 489 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0361+/-0.000358; mu= 10.0020+/- 0.022
 mean_var=105.9665+/-21.027, 0's: 0 Z-trim(116.4): 17  B-trim: 158 in 1/54
 Lambda= 0.124592
 statistics sampled from 27573 (27588) to 27573 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.323), width:  16
 Scan time:  9.170

The best scores are:                                      opt bits E(85289)
NP_056377 (OMIM: 616379) UBX domain-containing pro ( 489) 3262 597.0 3.8e-170
XP_011510972 (OMIM: 616379) PREDICTED: UBX domain- ( 456) 3060 560.7 3.1e-159
XP_011510973 (OMIM: 616379) PREDICTED: UBX domain- ( 341) 2304 424.8 1.9e-118
XP_016855625 (OMIM: 604460) PREDICTED: FAS-associa ( 541)  203 47.2 0.00014
NP_008982 (OMIM: 604460) FAS-associated factor 1 [ ( 650)  203 47.2 0.00016


>>NP_056377 (OMIM: 616379) UBX domain-containing protein  (489 aa)
 initn: 3262 init1: 3262 opt: 3262  Z-score: 3175.6  bits: 597.0 E(85289): 3.8e-170
Smith-Waterman score: 3262; 100.0% identity (100.0% similar) in 489 aa overlap (1-489:1-489)

               10        20        30        40        50        60
pF1KSD MAAHGGSAASSALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGGIAEEPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MAAHGGSAASSALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGGIAEEPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD TSSASVSTVRPHTEEEVRAPIPQKQEILVEPEPLFGAPKRRRPARSIFDGFRDFQTETIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TSSASVSTVRPHTEEEVRAPIPQKQEILVEPEPLFGAPKRRRPARSIFDGFRDFQTETIR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD QEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 QEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFAC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD QCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 QCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD EWHQLDVSSFLDQVTGFLGEHGQLDGLSSSPPKKCARSESLIDASEDSQLEAAIRASLQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EWHQLDVSSFLDQVTGFLGEHGQLDGLSSSPPKKCARSESLIDASEDSQLEAAIRASLQE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD THFDSTQTKQDSRSDEESESELFSGSEEFISVCGSDEEEEVENLAKSRKSPHKDLGHRKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 THFDSTQTKQDSRSDEESESELFSGSEEFISVCGSDEEEEVENLAKSRKSPHKDLGHRKE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD ENRRPLTEPPVRTDPGTATNHQGLPAVDSEILEMPPEKADGVVEGIDVNGPKAQLMLRYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 ENRRPLTEPPVRTDPGTATNHQGLPAVDSEILEMPPEKADGVVEGIDVNGPKAQLMLRYP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD DGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQ
              430       440       450       460       470       480

                
pF1KSD ETVFVQERN
       :::::::::
NP_056 ETVFVQERN
                

>>XP_011510972 (OMIM: 616379) PREDICTED: UBX domain-cont  (456 aa)
 initn: 3060 init1: 3060 opt: 3060  Z-score: 2979.8  bits: 560.7 E(85289): 3.1e-159
Smith-Waterman score: 3060; 100.0% identity (100.0% similar) in 456 aa overlap (34-489:1-456)

            10        20        30        40        50        60   
pF1KSD HGGSAASSALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGGIAEEPSTSS
                                     ::::::::::::::::::::::::::::::
XP_011                               MLEACNNNLEMAVTMFLDGGGIAEEPSTSS
                                             10        20        30

            70        80        90       100       110       120   
pF1KSD ASVSTVRPHTEEEVRAPIPQKQEILVEPEPLFGAPKRRRPARSIFDGFRDFQTETIRQEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASVSTVRPHTEEEVRAPIPQKQEILVEPEPLFGAPKRRRPARSIFDGFRDFQTETIRQEQ
               40        50        60        70        80        90

           130       140       150       160       170       180   
pF1KSD ELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCL
              100       110       120       130       140       150

           190       200       210       220       230       240   
pF1KSD NRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWH
              160       170       180       190       200       210

           250       260       270       280       290       300   
pF1KSD QLDVSSFLDQVTGFLGEHGQLDGLSSSPPKKCARSESLIDASEDSQLEAAIRASLQETHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLDVSSFLDQVTGFLGEHGQLDGLSSSPPKKCARSESLIDASEDSQLEAAIRASLQETHF
              220       230       240       250       260       270

           310       320       330       340       350       360   
pF1KSD DSTQTKQDSRSDEESESELFSGSEEFISVCGSDEEEEVENLAKSRKSPHKDLGHRKEENR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSTQTKQDSRSDEESESELFSGSEEFISVCGSDEEEEVENLAKSRKSPHKDLGHRKEENR
              280       290       300       310       320       330

           370       380       390       400       410       420   
pF1KSD RPLTEPPVRTDPGTATNHQGLPAVDSEILEMPPEKADGVVEGIDVNGPKAQLMLRYPDGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RPLTEPPVRTDPGTATNHQGLPAVDSEILEMPPEKADGVVEGIDVNGPKAQLMLRYPDGK
              340       350       360       370       380       390

           430       440       450       460       470       480   
pF1KSD REQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETV
              400       410       420       430       440       450

             
pF1KSD FVQERN
       ::::::
XP_011 FVQERN
             

>>XP_011510973 (OMIM: 616379) PREDICTED: UBX domain-cont  (341 aa)
 initn: 2304 init1: 2304 opt: 2304  Z-score: 2247.4  bits: 424.8 E(85289): 1.9e-118
Smith-Waterman score: 2304; 100.0% identity (100.0% similar) in 341 aa overlap (149-489:1-341)

      120       130       140       150       160       170        
pF1KSD IRQEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDF
                                     ::::::::::::::::::::::::::::::
XP_011                               MHKGSFETAKECGQMQNKWLMINIQNVQDF
                                             10        20        30

      180       190       200       210       220       230        
pF1KSD ACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQK
               40        50        60        70        80        90

      240       250       260       270       280       290        
pF1KSD LVEWHQLDVSSFLDQVTGFLGEHGQLDGLSSSPPKKCARSESLIDASEDSQLEAAIRASL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVEWHQLDVSSFLDQVTGFLGEHGQLDGLSSSPPKKCARSESLIDASEDSQLEAAIRASL
              100       110       120       130       140       150

      300       310       320       330       340       350        
pF1KSD QETHFDSTQTKQDSRSDEESESELFSGSEEFISVCGSDEEEEVENLAKSRKSPHKDLGHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QETHFDSTQTKQDSRSDEESESELFSGSEEFISVCGSDEEEEVENLAKSRKSPHKDLGHR
              160       170       180       190       200       210

      360       370       380       390       400       410        
pF1KSD KEENRRPLTEPPVRTDPGTATNHQGLPAVDSEILEMPPEKADGVVEGIDVNGPKAQLMLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEENRRPLTEPPVRTDPGTATNHQGLPAVDSEILEMPPEKADGVVEGIDVNGPKAQLMLR
              220       230       240       250       260       270

      420       430       440       450       460       470        
pF1KSD YPDGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRKLSHLDYDITLQEAGLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YPDGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRKLSHLDYDITLQEAGLC
              280       290       300       310       320       330

      480         
pF1KSD PQETVFVQERN
       :::::::::::
XP_011 PQETVFVQERN
              340 

>>XP_016855625 (OMIM: 604460) PREDICTED: FAS-associated   (541 aa)
 initn: 226 init1: 156 opt: 203  Z-score: 203.3  bits: 47.2 E(85289): 0.00014
Smith-Waterman score: 203; 27.6% identity (58.6% similar) in 174 aa overlap (321-488:376-540)

              300       310       320       330       340          
pF1KSD EAAIRASLQETHFDSTQTKQDSRSDEESESELFSGSEEFISVCGSDEEEEVENLAKS---
                                     :.:.....  ..   ::.:  ::. .    
XP_016 MGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIFTAQQQE-DIKDEDEREARENVKREQDE
         350       360       370       380        390       400    

         350       360       370       380       390        400    
pF1KSD --RKSPHKDLGHRKEENRRPLTEPPVRTDPGTATNHQGLPAVDSEILE-MPPEKADGVVE
         : : . : ..: : ..: ..:   : .     ...   :.   . . .:::  .  .:
XP_016 AYRLSLEADRAKR-EAHEREMAEQ-FRLEQIRKEQEEEREAIRLSLEQALPPEPKEENAE
          410        420        430       440       450       460  

          410       420       430       440       450       460    
pF1KSD GIDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRKLS
             : ..: .: :.:.  .  .  . ::  .   : :::.: ....::..:::: ..
XP_016 ------PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKGFPWDEYKLLSTFPRRDVT
                  470       480       490       500       510      

          470       480         
pF1KSD HLDYDITLQEAGLCPQETVFVQERN
       .:: . .: :. : ::::.:.. . 
XP_016 QLDPNKSLLEVKLFPQETLFLEAKE
        520       530       540 

>>NP_008982 (OMIM: 604460) FAS-associated factor 1 [Homo  (650 aa)
 initn: 226 init1: 156 opt: 203  Z-score: 202.0  bits: 47.2 E(85289): 0.00016
Smith-Waterman score: 203; 27.6% identity (58.6% similar) in 174 aa overlap (321-488:485-649)

              300       310       320       330       340          
pF1KSD EAAIRASLQETHFDSTQTKQDSRSDEESESELFSGSEEFISVCGSDEEEEVENLAKS---
                                     :.:.....  ..   ::.:  ::. .    
NP_008 MGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIFTAQQQE-DIKDEDEREARENVKREQDE
          460       470       480       490        500       510   

         350       360       370       380       390        400    
pF1KSD --RKSPHKDLGHRKEENRRPLTEPPVRTDPGTATNHQGLPAVDSEILE-MPPEKADGVVE
         : : . : ..: : ..: ..:   : .     ...   :.   . . .:::  .  .:
NP_008 AYRLSLEADRAKR-EAHEREMAEQ-FRLEQIRKEQEEEREAIRLSLEQALPPEPKEENAE
           520        530        540       550       560       570 

          410       420       430       440       450       460    
pF1KSD GIDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRKLS
             : ..: .: :.:.  .  .  . ::  .   : :::.: ....::..:::: ..
NP_008 ------PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKGFPWDEYKLLSTFPRRDVT
                   580       590       600       610       620     

          470       480         
pF1KSD HLDYDITLQEAGLCPQETVFVQERN
       .:: . .: :. : ::::.:.. . 
NP_008 QLDPNKSLLEVKLFPQETLFLEAKE
         630       640       650




489 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:11:53 2016 done: Thu Nov  3 03:11:54 2016
 Total Scan time:  9.170 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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