GENSCAN 1.0	Date run:  3-Nov-116	Time: 03:12:22

Sequence gi568815595r:196256688_196532399 : 275712 bp : 44.29% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3654   3694   41  2  2   86   87    11 0.042   0.46
 1.02 Intr +  17247  17412  166  0  1   98   45    94 0.554   6.06
 1.03 Term +  24370  24522  153  0  0  114   48    52 0.813   1.72
 1.04 PlyA +  25532  25537    6                               1.05

 2.00 Prom +  26111  26150   40                              -3.56
 2.01 Sngl +  31232  31564  333  1  0   64   46   224 0.563  10.56
 2.02 PlyA +  32936  32941    6                               1.05

 3.03 PlyA -  33761  33756    6                               1.05
 3.02 Term -  50325  50252   74  1  2  112   48    85 0.588   4.97
 3.01 Init -  61465  61309  157  1  1   98   10   181 0.826  11.38
 3.00 Prom -  65780  65741   40                              -4.26

 4.05 PlyA -  65845  65840    6                              -0.45
 4.04 Term -  67310  67130  181  1  1   57   48   178 0.987   7.78
 4.03 Intr -  67753  67584  170  1  2  134   67    28 0.955   4.04
 4.02 Intr -  70345  70268   78  1  0  135   68    36 0.947   6.05
 4.01 Init -  82114  82085   30  1  0   84  116    48 0.224   6.93
 4.00 Prom -  89141  89102   40                              -5.36

 5.07 PlyA -  90998  90993    6                               1.05
 5.06 Term - 100159  99998  162  1  0  110   41   114 0.995   6.84
 5.05 Intr - 105236 105157   80  0  2   79   94    73 0.998   6.27
 5.04 Intr - 106000 105607  394  1  1   58  115   332 0.998  27.13
 5.03 Intr - 111468 111341  128  1  2   58   89    69 0.904   4.40
 5.02 Intr - 112824 112734   91  0  1   67  110    -9 0.828  -1.23
 5.01 Init - 115337 115209  129  2  0   49   94    87 0.134   5.55
 5.00 Prom - 116242 116203   40                              -6.46

 6.00 Prom + 117545 117584   40                              -4.06
 6.01 Init + 124837 125146  310  0  1   99  -54   251 0.006   9.48
 6.02 Term + 127450 128285  836  2  2   53   36   341 0.008  18.55
 6.03 PlyA + 129684 129689    6                               1.05

 7.06 PlyA - 131317 131312    6                               1.05
 7.05 Term - 132541 132473   69  1  0   58   29    50 0.053  -5.96
 7.04 Intr - 135238 135126  113  2  2   72   98    92 0.207   8.70
 7.03 Intr - 146332 146265   68  0  2   84  103    48 0.185   4.45
 7.02 Intr - 175202 175097  106  0  1  120   80    32 0.085   4.87
 7.01 Init - 175853 175640  214  2  1   62  111   288 0.946  25.41
 7.00 Prom - 189415 189376   40                              -5.16

 8.14 PlyA - 191678 191673    6                               1.05
 8.13 Term - 202387 202298   90  1  0   83   39    84 0.487   0.72
 8.12 Intr - 207225 207085  141  0  0  103   52    18 0.252   0.25
 8.11 Intr - 216085 215213  873  1  0  132   63   298 0.442  23.23
 8.10 Intr - 218625 218544   82  2  1   67   95    35 0.511   1.74
 8.09 Intr - 227204 227083  122  2  2   60  100    22 0.479  -0.11
 8.08 Intr - 230891 230712  180  2  0   14   87   164 0.958   8.96
 8.07 Intr - 231996 231920   77  1  2   44  100    83 0.416   4.33
 8.06 Intr - 246470 246186  285  0  0   29   92   287 0.100  20.51
 8.05 Intr - 250158 250122   37  0  1   81   46    58 0.091  -1.26
 8.04 Intr - 251644 251284  361  0  1   52   91   192 0.152  11.12
 8.03 Intr - 252982 252833  150  0  0  120   81   119 0.992  13.68
 8.02 Intr - 260022 259945   78  2  0   83   38    88 0.734   1.97
 8.01 Init - 261435 261311  125  0  2   88   66    51 0.495   2.55
 8.00 Prom - 265364 265325   40                              -4.56

 9.02 PlyA - 267420 267415    6                               1.05
 9.01 Term - 272360 272173  188  0  2   65   52   146 0.154   6.35

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr - 115355 115209  147  2  0   82   94   103 0.848  10.73
S.002 Sngl + 124837 125175  339  0  0   99   34   266 0.950  18.33


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:196256688_196532399|GENSCAN_predicted_peptide_1|119_aa
MAMSKKTGNNKQSCAQAIHEGAPAGLNGAALSSALASPPVLLDTQNPEGAKAEGGWHVST
APSTRKPSQAYIIFPTKTQCPVFFYQHINAQFQSRVRKQTLHLGCFSASTVVVLNELVL

>gi568815595r:196256688_196532399|GENSCAN_predicted_CDS_1|360_bp
atggctatgagcaaaaagacaggcaataacaaacagtcttgcgcccaggctattcacgaa
ggggcgcctgcaggcctgaatggagctgctctcagctccgccttggcgtcccctcctgtg
ctgctggacacccaaaatccagagggggccaaggcagaagggggctggcatgtcagcact
gcccctagcacacgcaaacccagccaggcctacattatcttccccactaaaacccaatgc
ccagtatttttctatcagcatatcaatgcccagttccaaagccgagtgcgcaagcagact
ttacatttgggatgtttctctgcttctaccgtggtggtgcttaatgagctggtgctctaa

>gi568815595r:196256688_196532399|GENSCAN_predicted_peptide_2|110_aa
MQRRRLLEVGYGCEPAQVLAGPSRRAARLLPCPTRAVSAQAGLCAEVLPLHLRAYRSPHP
RTRAANVQEARAPSAETPRPRLPRRSVSFYLRGEVRGICDRQPSPLKTCG

>gi568815595r:196256688_196532399|GENSCAN_predicted_CDS_2|333_bp
atgcagcgaagacgtctccttgaagtgggatacggatgtgaaccggcccaagtgctcgcc
ggtccgtcaagacgcgctgcccggctgctcccgtgtccaactcgggctgtgtccgcccag
gcgggcctgtgcgcggaggtcctaccgctgcacctccgcgcctaccgcagcccgcacccc
cgcacccgggcagccaacgtgcaggaggcccgggcgccttcagcggagacgccccgaccg
cggctgcctcgccgcagcgttagcttttacctacgtggggaagtaaggggaatttgcgac
cgccagcccagtccgctgaaaacctgtggctga

>gi568815595r:196256688_196532399|GENSCAN_predicted_peptide_3|76_aa
MATSIGVSFSVGDGVPEAEKNAGEPENTYILRPVFQQRRVEDGLWRGDLERAEMGFDRYK
MVVQVVIGEQRGEGVL

>gi568815595r:196256688_196532399|GENSCAN_predicted_CDS_3|231_bp
atggccacgtccatcggagtgtccttctcggtgggcgacggggtgcctgaggctgagaag
aacgcaggggagcccgagaacacctatattctgcggcctgttttccagcagaggcgggta
gaggacgggctgtggcggggcgacctcgagcgcgctgaaatgggatttgaccgatacaaa
atggtggtgcaagtagtgattggagaacaaagaggtgaaggagtattgtga

>gi568815595r:196256688_196532399|GENSCAN_predicted_peptide_4|152_aa
MQHIESAKGKVLTAAILISLMGWRYGCFSKSGLCRSVLTALLSGGLALLGALICFVTSGV
ALKDGPFCMFDVSSFNQTQAWKYGYPFKDLHSRNYLYDRSLWNSVCLEPSAAVVWHVSLF
SALLCISLLQLLLVVVHVINSLLGLFCSLCEK

>gi568815595r:196256688_196532399|GENSCAN_predicted_CDS_4|459_bp
atgcaacacatcgagtcagccaagggcaaggtactcactgcagctatcctcatctccttg
atgggctggagatacggctgcttcagtaagagtgggctctgtcgaagcgtgcttactgct
ctgttgtcaggtggcctggctttacttggagccctgatttgctttgtcacttctggagtt
gctctgaaagatggtcctttttgcatgtttgatgtttcatccttcaatcagacacaagct
tggaaatatggttacccattcaaagacctgcatagtaggaattatctgtatgaccgttcg
ctctggaactccgtctgcctggagccctctgcagctgttgtctggcacgtgtccctcttc
tccgcccttctgtgcatcagcctgctccagcttctcctggtggtcgttcatgtcatcaac
agcctcctgggccttttctgcagcctctgcgagaagtga

>gi568815595r:196256688_196532399|GENSCAN_predicted_peptide_5|327_aa
MQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKL
GDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHGQLDGLSSSPPKKCARSESLI
DASEDSQLEAAIRASLQETHFDSTQTKQDSRSDEESESELFSGSEEFISVCGSDEEEEVE
NLAKSRKSPHKDLGHRKEENRRPLTEPPVRTDPGTATNHQGLPAVDSEILEMPPEKADGV
VEGIDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRK
LSHLDYDITLQEAGLCPQETVFVQERN

>gi568815595r:196256688_196532399|GENSCAN_predicted_CDS_5|984_bp
atgcaaaataagtggctgatgataaacattcaaaatgttcaagactttgcatgtcagtgc
ctcaaccgcgatgtgtggagcaacgaagctgtgaagaatattatccgggaacatttcatt
ttctggcaggtttatcatgacagtgaggaaggtcagagatacatacagttttataagtta
ggggatttcccctatgtttccatattggacccacggacaggtcagaagctagtagaatgg
caccagttagatgtatcttctttcttggaccaagtgacgggatttctgggtgaacatgga
caactggatggactttctagcagtccccccaaaaaatgtgcccgttcagagagccttata
gatgcaagtgaagacagccagctagaagctgccatcagagcctccttacaagaaacacat
tttgattcaacacagacaaaacaggatagccgctcagatgaagaatctgaatctgaactt
ttttctggcagtgaggagttcatatccgtttgtggctctgatgaagaagaagaggtagag
aatcttgccaagtccagaaagtctccccacaaagatttggggcatagaaaagaggagaat
agaaggccgctgactgagccaccagtcagaactgatcctggaacagccacaaaccaccaa
ggattgccagctgtggattcagagatactggagatgccacctgaaaaagcagatggagta
gtggaggggatagatgtaaatggaccaaaagcacagctgatgttgcggtatccagatgga
aaaagggaacagatcactcttccagagcaagctaaactgctagctttggtgaagcacgtg
cagtctaaaggatacccaaatgaacgttttgaacttctcaccaactttcctcgaaggaaa
ttatctcatctggactatgatattacattgcaagaggcaggcctttgtcctcaagagact
gtctttgtacaggaaagaaattaa

>gi568815595r:196256688_196532399|GENSCAN_predicted_peptide_6|381_aa
MGRNQSRKDENSKNQSASSPPKDRNSLPATEQRWMENDFDKLTEVVFRRSVITNFSKLKE
DVRTHRKEAKHLEKRLDELLTRINSVEKNLNDLMELKTTARELQIQTTTREYYKHLYANK
LENLEEMGKFLDTYTLPRLNQEEVESLNRPITGSEIEAIINSLTTKKSPGPDGFTAKFYQ
RYKEELVPFLLKLFQSTEKKGILPNSFYEANIILIPKPGRDTTKKENFRPISLMNIDAKI
LNKILANRIQQHMKKLIHHDQVGFIPGMQGWFNICKSINIIHHINRTNDKNHMIISIDAE
KTFNKIQQPFTLKILNKLGIDGTYLKIIRDIYGKPTANTILNGQKLEAFPLKTGTRQGCP
LSPLLFNILLEVLARAIRQEK

>gi568815595r:196256688_196532399|GENSCAN_predicted_CDS_6|1146_bp
atggggagaaaccagagcagaaaagatgaaaattctaaaaatcagagcgcctcttctcct
ccaaaggatcgcaactccttgccagcaacggaacaacgctggatggagaatgactttgac
aagttgacagaagtagtcttcagaaggtcggtaataacaaacttctccaagctaaaggag
gatgttcgaacccatcgcaaggaagctaaacaccttgaaaaaagattagatgaattgcta
actagaataaacagtgtagagaagaacttaaatgacctgatggagctgaaaaccacagca
cgagaacttcaaatacaaactaccaccagagaatactataaacacctctatgcaaataaa
ctagaaaatctagaagaaatgggcaaattcctggacacatacaccctcccaagactaaac
caggaagaagttgaatctctgaacagaccaataacaggctctgaaattgaggcaataatt
aacagcctaacaaccaaaaaaagtccaggaccagacggattcacagccaaattctaccag
aggtacaaagaggagctggtaccattccttctgaaactattccaatcaacagaaaaaaag
ggaatcctccctaactcattttatgaggccaacatcatcctgataccaaagcctggcaga
gacacaacaaaaaaggagaattttagaccaatatccctgatgaacattgatgcgaaaatc
ctcaataaaatactggcaaaccgaatccagcagcacatgaaaaagcttatccaccatgat
caagtcggcttcatccctgggatgcaaggttggttcaacatatgcaaatcaataaacata
atccatcatatcaacagaaccaacgacaaaaaccacatgattatctcaatagatgcagaa
aagaccttcaacaaaattcaacagcccttcacgctaaaaattctcaataaactaggtatt
gatggaacgtatctcaaaataataagagatatttatggcaaacccacagccaataccata
ctgaatgggcaaaaactggaagcattccctttgaaaaccggcacaagacaaggatgccct
ctctcaccactcctattcaacatactgttggaagttctggccagggcaatcaggcaagag
aaataa

>gi568815595r:196256688_196532399|GENSCAN_predicted_peptide_7|189_aa
MRLRRPLGTGGAGLEGRSMRLRTPHGEVGEGSPCVSVLLFGGGGGGKMAAHGGSAASSAL
KGLIQQFTTITGHSAPVPGLPFPFLGPSEPSPWPWRVRALPPSRQGREEVRAPIPQKQEI
LVEPEPLFGVRQEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETYSGDTTAIERENS
SNIKGRKGS

>gi568815595r:196256688_196532399|GENSCAN_predicted_CDS_7|570_bp
atgcgcctgcgcagaccgctggggacgggaggggcggggctcgaggggcggtcaatgcgc
ctgcgcacaccgcacggcgaagtgggggagggcagtccgtgtgtgtctgtgttgttgttc
ggcggcggcggcggcggtaagatggctgcccacgggggctccgcggcgtcctcggcgctg
aaggggttaattcaacagttcaccaccattaccggtcattctgccccggtccccggcctg
cccttcccctttctgggcccctcggagccatcgccgtggccctggcgggttcgggccctc
ccgccttcacggcaaggccgagaagaagttcgtgccccaattcctcaaaagcaggaaata
ctggtggaaccagaaccattatttggtgttcggcaagaacaagaattaagaaatggagga
gctatcgataagaaattaactacccttgcagatctattccggccacccattgatttgatg
cataaaggcagctttgaaacatattctggtgatactacagccattgagagagagaatagc
agcaatattaaaggcagaaaaggatcttag

>gi568815595r:196256688_196532399|GENSCAN_predicted_peptide_8|866_aa
MPVHVTSTWLAAMISAHVATKKKQQELPYWVNLALSHQHLHIMFLEDKDFALLITILPVP
GIVLLIHSVDHKLQALETQFKELDFTKDNLMQKFEHHSKALASQAAQDEMWTAVRALQLT
SMELNILYSYVIEVLICLHTRVLEKLPDLVRGLPTLASVLRRKVKNKRVRVVWESILEEC
GLQEGDITALCTFFIARGNKAEHYTAKVRQMYIRDVTFLITNMVKNQALQDSLLRAVQSW
DNNSELIKFGNAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCR
RRVSSWTRYHTRRNSLVNVELWTIIQKHYPRECKLRASGQESEEVADDYQPVRLLSKPGE
LRREYEEEISKVAAERRASEEEENKASEEYIQRLLAEEEEEEKRQAEKRRRAMEEQLKSD
EELARKLSIDINNFCEGSISASPLNSRKSDPVTPKSEKKSKNKQRNTGDIQKYLTPKSQF
GSASHSEAVQEVRKDSVSKDIDSSDRKSPTGQDTEIEDMPTLSPQISLGVGEQGADSSIE
SPMPWLCACGAEWYHEGNVKTRPSNHGKELCVLSHERPKTRVPYSKETAVMPCGRTESGC
APTSGVTQTNGNNTGETENEESCLLISKEISKRKNQESSFEAVKDPCFSAKRRKVSPESS
PDQEETEINFTQKLIDLEHLLFERHKQEEQDRLLALQLQKEVDKEQMVPNRQKGSPDEYH
LRATSSPPDKVLNGQRKNPKDGNFKRQTHTKHPTPERGSRDKNRQVSLKMQLKQSVNRRK
MPNSTRDHCKMYPGSQKTLAPEETDSQKYLVTYSSSHTSSAYVVWIKIWKTDTKNLEEIK
PSDIITKFPELLEGYNPEIIEHQDKI

>gi568815595r:196256688_196532399|GENSCAN_predicted_CDS_8|2601_bp
atgcctgtacatgttacttctacctggctggctgccatgatatctgcacatgtggcaaca
aagaaaaagcagcaggaactgccatattgggtgaacctggctcttagccaccagcattta
catattatgttccttgaggacaaggatttcgccttacttatcactatattaccagtgcct
ggaatagtgctgctcatccattcagtagaccacaaactccaagcgttagaaacacagttc
aaagaactagacttcaccaaggataacctgatgcagaaattcgaacatcatagtaaggct
ttggcaagccaagcagcccaagatgagatgtggacagcagttcgggcactccagctcact
tcaatggaattgaatattttatacagctacgtcattgaagtacttatctgcttgcatact
cgtgtgcttgagaagctgccagacctggtgagaggtcttccaaccttagcctctgtactc
agaagaaaagttaagaacaagcgcgttagagttgtatgggagtccatactggaggagtgt
gggctgcaagaaggagacatcacagcactttgtaccttctttattgcacgtggtaacaag
gcagaacactatactgctaaagtgaggcagatgtacatcagggatgtcacgttcctaatt
actaacatggtaaagaaccaggctctgcaggacagtttgctgagggctgtgcagtcatgg
gacaacaactcagaactcatcaaattcgggaacgccatcccctcgctgtccgagtgccag
tgcgggatctgcatggaaatcctcgtggagcccgtcaccctcccgtgtaaccacacgctg
tgtaaaccgtgcttccagtcgaccgtcgaaaaggcgagtttatgctgtcccttctgtcgc
cgccgggtatcgtcgtggactcggtaccatacccgaagaaattctctcgtcaacgtggaa
ctgtggacgataattcaaaaacactatcccagggagtgcaagcttagagcgtctggccaa
gaatcagaggaagtggctgatgactatcagccagttcgtctgctcagtaaacctggggaa
ctgagaagagaatatgaagaggaaataagcaaggtggcggcagagcgacgggccagcgag
gaagaagaaaacaaagccagtgaagaatacatacagaggttgttggcagaggaggaagaa
gaggaaaaaagacaggcagaaaaaaggcgaagagcgatggaagaacaactgaaaagtgat
gaggaactggcaagaaagctaagcattgatattaacaatttctgtgagggaagtatctcg
gcttctcccttgaattccagaaaatctgatccagttacacccaagtctgaaaagaaaagt
aagaacaaacaaagaaacactggagatattcagaagtatttgacaccgaaatctcagttt
gggtcagcctcacactctgaagctgtacaagaagtcaggaaagactccgtatctaaggac
attgacagtagtgataggaaaagcccaacagggcaagacacagaaatagaagatatgccg
acactttctccacagatatcccttggagttggagaacaaggtgcagattcttcaatagag
tcccctatgccatggttatgtgcctgtggtgccgaatggtaccatgaaggaaacgtcaaa
acaagaccaagcaatcatgggaaagagttatgtgtcttaagtcacgagcgacctaaaacc
agagttccctactcgaaagaaactgcagttatgccttgtggcagaacagaaagtgggtgc
gcccccacatcaggggtgacacagacaaatggaaacaacacaggtgagacagaaaatgaa
gagtcgtgcctactgatcagtaaggagatttccaaaagaaaaaaccaagaatcttccttt
gaagcagtcaaggatccatgcttttctgcaaaaagaagaaaagtgtcccccgaatcttcc
ccagatcaagaggaaacagaaataaactttacccaaaaactgatagatttggagcatcta
ctgtttgagagacataaacaagaagaacaggacaggttattggcattacaacttcagaag
gaggtggataaagagcaaatggtgccaaaccggcaaaaaggatccccagatgagtatcac
ttacgcgctacatcctcccctccagacaaagtgctaaatggacagaggaagaatcccaaa
gatgggaacttcaaaaggcaaactcacacaaagcatccaacaccagagagaggctcaagg
gacaaaaataggcaagtgtctttaaagatgcagttgaagcagtcagttaatagaagaaag
atgccaaattctactagagatcactgtaagatgtatcctgggtcacaaaagaccttggct
ccagaagaaactgattctcagaaataccttgtgacttactcaagttctcatactagctct
gcgtatgtggtgtggataaaaatttggaaaacagacactaaaaacttggaggaaattaag
ccatcagacatcatcactaaattcccagagctcctagaaggatacaatccagaaataata
gaacaccaggataagatttga

>gi568815595r:196256688_196532399|GENSCAN_predicted_peptide_9|62_aa
XLHSGDQCSELGRHRLTLSDGRGREPPADGGSGRQRPLEARAGSTPAAPATAQLPAEAPR
PV

>gi568815595r:196256688_196532399|GENSCAN_predicted_CDS_9|189_bp
nctctccattccggggaccagtgttctgagctcggccgccatcgcctcacgctcagcgac
gggcgtggccgggagccgcctgcggatggaggaagcggccgccagcgccccctggaggct
cgggccggctccactcccgcggcccccgccaccgcccagctccccgcggaggcgcccagg
ccggtctga