Result of FASTA (omim) for pF1KSDA0785
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0785, 694 aa
  1>>>pF1KSDA0785 694 - 694 aa - 694 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6640+/-0.000389; mu= 18.3222+/- 0.024
 mean_var=73.8795+/-14.700, 0's: 0 Z-trim(112.5): 35  B-trim: 186 in 1/51
 Lambda= 0.149215
 statistics sampled from 21466 (21501) to 21466 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.614), E-opt: 0.2 (0.252), width:  16
 Scan time:  7.950

The best scores are:                                      opt bits E(85289)
NP_001164607 (OMIM: 300178) zinc finger BED domain ( 694) 4609 1002.0       0
NP_004720 (OMIM: 300178) zinc finger BED domain-co ( 694) 4609 1002.0       0
NP_001164606 (OMIM: 300178) zinc finger BED domain ( 694) 4609 1002.0       0
NP_055653 (OMIM: 612552) zinc finger BED domain-co (1171)  503 118.2 1.8e-25
NP_001167579 (OMIM: 613512) zinc finger BED domain ( 979)  188 50.3 4.1e-05


>>NP_001164607 (OMIM: 300178) zinc finger BED domain-con  (694 aa)
 initn: 4609 init1: 4609 opt: 4609  Z-score: 5358.5  bits: 1002.0 E(85289):    0
Smith-Waterman score: 4609; 100.0% identity (100.0% similar) in 694 aa overlap (1-694:1-694)

               10        20        30        40        50        60
pF1KSD MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
              610       620       630       640       650       660

              670       680       690    
pF1KSD DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
       ::::::::::::::::::::::::::::::::::
NP_001 DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
              670       680       690    

>>NP_004720 (OMIM: 300178) zinc finger BED domain-contai  (694 aa)
 initn: 4609 init1: 4609 opt: 4609  Z-score: 5358.5  bits: 1002.0 E(85289):    0
Smith-Waterman score: 4609; 100.0% identity (100.0% similar) in 694 aa overlap (1-694:1-694)

               10        20        30        40        50        60
pF1KSD MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
              610       620       630       640       650       660

              670       680       690    
pF1KSD DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
       ::::::::::::::::::::::::::::::::::
NP_004 DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
              670       680       690    

>>NP_001164606 (OMIM: 300178) zinc finger BED domain-con  (694 aa)
 initn: 4609 init1: 4609 opt: 4609  Z-score: 5358.5  bits: 1002.0 E(85289):    0
Smith-Waterman score: 4609; 100.0% identity (100.0% similar) in 694 aa overlap (1-694:1-694)

               10        20        30        40        50        60
pF1KSD MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
              610       620       630       640       650       660

              670       680       690    
pF1KSD DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
       ::::::::::::::::::::::::::::::::::
NP_001 DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
              670       680       690    

>>NP_055653 (OMIM: 612552) zinc finger BED domain-contai  (1171 aa)
 initn: 402 init1: 136 opt: 503  Z-score: 578.1  bits: 118.2 E(85289): 1.8e-25
Smith-Waterman score: 556; 25.0% identity (56.6% similar) in 647 aa overlap (20-650:558-1163)

                          10        20        30        40         
pF1KSD            MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRI
                                     .  ::.:..:..      :  .  :. :  
NP_055 LASAESSSSKLTDLPTVVTKNNQVMFPVNSKKTSKLWNHFSI------CSADSTKVVCLH
       530       540       550       560             570       580 

      50        60        70        80        90       100         
pF1KSD CMAQIAYSGNTSNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDA
       :   :. . . .::.      : ..:   : . ::  . :  .. .   :....  : ..
NP_055 CGRTISRGKKPTNLGTSCLLRHLQRFHSNVLK-TEVSETARPSSPDTRVPRGTELSGASS
             590       600       610        620       630       640

     110       120        130       140       150       160        
pF1KSD LAVKAGHGYDSKK-QQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYI
       .     . :::.   ...:. .  .:   : : :.::.  :. ::.   :.: ::. .:.
NP_055 FDDTNEKFYDSHPVAKKITSLIAEMIALDLQPYSFVDNVGFNRLLEYLKPQYSLPAPSYF
              650       660       670       680       690       700

      170       180       190          200       210       220     
pF1KSD STKAIPEKYGAVREVILKELAEATWCGI---STDMWRSENQNRAYVTLAAHFLGLGAPN-
       :  :::  :  :...:...: ::   :.   .. .: : ::.: :.::.::.... .:  
NP_055 SRTAIPGMYDNVKQIIMSHLKEAE-SGVIHFTSGIWMS-NQTREYLTLTAHWVSFESPAR
              710       720        730        740       750        

             230       240       250       260        270       280
pF1KSD --CLSMG-SRCLKTFEVPEENTAETITRVLYEVFIEWGISAKV-FGATTNYGKDIVKACS
         : .   :  : . .:  . ....: . :   .  :  :. .  : :.. . .: :.  
NP_055 PRCDDHHCSALLDVSQVDCDYSGNSIQKQLECWWEAWVTSTGLQVGITVTDNASIGKT--
      760       770       780       790       800       810        

                290       300        310       320       330       
pF1KSD LLDVAVH--MPCLGHTFNAGIQQAFQLPKL-GALLSRCRKLVEYFQQSAVAMYMLYEKQK
        :. . :  . :..:: :  ...:..  ..   :::  ::. :  ..:  :   : : :.
NP_055 -LNEGEHSSVQCFSHTVNLIVSEAIKSQRMVQNLLSLARKICERVHRSPKAKEKLAELQR
         820       830       840       850       860       870     

       340       350       360       370       380       390       
pF1KSD QQNVAHCMLVSNRVSWWGSTLAMLQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGL
       .  . .  :...  : :.... ::.:: ::. .:  . ::   : . ..  ..: .....
NP_055 EYALPQHHLIQDVPSKWSTSFHMLERLIEQKRAINEMSVE--CNFRELISCDQWEVMQSV
         880       890       900       910         920       930   

       400       410       420        430          440       450   
pF1KSD VELLQPFKQVAEMLSASRYPTISMVKPLLHML-LNTTLNIKET---DSKELSMAKEVIAK
        . :.::. ... .: ... :.:.: :..:.:  .. . ..::   :.   :. ::....
NP_055 CRALKPFEAASREMS-TQMSTLSQVIPMVHILNRKVEMLFEETMGIDTMLRSL-KEAMVS
           940        950       960       970       980        990 

           460       470       480       490       500       510   
pF1KSD ELSKTYQETPEIDMFLNVATFLDPRYKRLPFLSAFERQQVENRVVEEAKGLLDKVKDGGY
       .:: : .. :.  .:   ::.::::::   ...  : .: .. ...: . :.....    
NP_055 RLSATLHD-PRY-VF---ATLLDPRYKA-SLFTEEEAEQYKQDLIRELE-LMNSTS----
             1000          1010       1020      1030       1040    

           520       530       540       550       560       570   
pF1KSD RPAEDKIFPVPEEPPVKKLMRTSTPPPASVINNMLAEIFCQTGGVEDQEEWHAQVVEELS
                  :.  ...   ...:   :. .. :  .  ..   . .:.    .:    
NP_055 -----------EDVAASHRCDAGSPSKDSAAEENLWSLVAKVKKKDPREKLPEAMVLA--
                        1050      1060      1070      1080         

           580       590       600       610       620       630   
pF1KSD NFKSQKVLGLNEDPLKWWSDRLALFPLLPKVLQKYWCVTATRVAPERLFGSAANVVSAKR
        .  ..::  . ::: .:. . : .: :  .  ..     . :  :.::.. ..  :  .
NP_055 -YLEEEVLEHSCDPLTYWNLKKASWPGLSALAVRFLGCPPSIVPSEKLFNTPTENGSLGQ
       1090      1100      1110      1120      1130      1140      

           640       650       660       670       680       690   
pF1KSD NRLAPAHVDEQVFLYENARSGAEAEPEDQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSF
       .::   : .. .::  :                                           
NP_055 SRLMMEHFEKLIFLKVNLPLIYFQY                                   
       1150      1160      1170                                    

>>NP_001167579 (OMIM: 613512) zinc finger BED domain-con  (979 aa)
 initn: 180 init1:  81 opt: 188  Z-score: 212.8  bits: 50.3 E(85289): 4.1e-05
Smith-Waterman score: 390; 22.1% identity (56.2% similar) in 552 aa overlap (126-653:410-950)

         100       110       120       130       140       150     
pF1KSD KLKPESSQQPGQDALAVKAGHGYDSKKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKT
                                     .. :.. .: : ..: .  . :.:. ... 
NP_001 ESPIPVAEQGTLMRAQERETTCCGNPVSSHISQAIIQMIVEDMHPYNYFSTPAFQRFMQI
     380       390       400       410       420       430         

         160       170       180         190       200       210   
pF1KSD ADPRYELPSRKYISTKAIPEKYGAVREVILKEL--AEATWCGISTDMWRSENQNRAYVTL
       . : :.:::. :. :::.:. :  ::: :.  :  ...    ...:.: ... .  :  .
NP_001 VAPDYRLPSETYFFTKAVPQLYDCVREKIFLTLENVQSQKIHLTVDIW-THDPSTDYFIV
     440       450       460       470       480        490        

           220       230           240       250       260         
pF1KSD AAHFLGLGAPNCLSMGS----RCLKTFEVPEENTAETITRVLYEVFIEWGI--SAKVFGA
       ..:...: . . :. :     :   .. :        :: .: :.  . :.  : . .  
NP_001 TVHWVSLETASFLNNGRIPDFRKWAVLCVTGLAKDCLITNILQELNDQIGLWLSPNFLIP
      500       510       520       530       540       550        

          270       280        290       300        310       320  
pF1KSD T---TNYGKDIVKACSLLDVA-VHMPCLGHTFNAGIQQAFQLPK-LGALLSRCRKLVEYF
       .   .. ....:.:  . : . .:.::. : .:  ::. :   : .  .:   ::  ..:
NP_001 SFIVSDNSSNVVHA--IKDGGFTHVPCFLHCLNMVIQDFFCEHKSIENMLVAARKTCHHF
      560       570         580       590       600       610      

            330       340       350       360       370       380  
pF1KSD QQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAMLQRLKEQQFVIAGVLVEDSNNH
       ..:. :  .: : :.....    : ..... : ::. ::. : :. . .   : . :.  
NP_001 SHSVKARQILQEFQNDHQLPWKNLKQDETGHWISTFYMLKWLLEHCYSVHHSLGRASG--
        620       630       640       650       660       670      

            390       400       410       420       430        440 
pF1KSD HLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTISMVKPLLHMLLNTTLNIKET-DS
        ..: . .:. .  . ..:.::..... .:. .   ...: ::.: :: .  ...:  . 
NP_001 -VVLTSLQWTLMTYVCDILKPFEEATQKVSV-KTAGLNQVLPLIHHLLLSLQKLREDFQV
           680       690       700        710       720       730  

             450       460       470           480          490    
pF1KSD KELSMAKEVIAKELSKTYQETPEIDMFLN----VATFLDPRYKR-LP--FLSAFERQQVE
       . ...: ... .   :   .:    :. .    .::.::: .:  :   : .. . .  .
NP_001 RGITQALNLVDSLSLKLETDTLLSAMLKSKPCILATLLDPCFKNSLEDFFPQGADLETYK
            740       750       760       770       780       790  

          500       510       520          530       540       550 
pF1KSD NRVVEEAKGLLDKVKDGGYRPAEDKIFP---VPEEPPVKKLMRTSTPPPASVINNMLAEI
       . ..::. . ...  .    :. .   :   :  .  ...: . .:   .:: .. . ..
NP_001 QFLAEEVCNYMESSPEICQIPTSEASCPSVTVGADSFTSSL-KEGTSSSGSVDSSAVDNV
            800       810       820       830        840       850 

             560       570       580       590       600       610 
pF1KSD FCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPLLPKVLQKYWCV
           :.   .    . ::.:  . : ..  : ..::: .:. .....: : .:  .:   
NP_001 --ALGSKSFMFPSAVAVVDEYFKEKYSEFSG-GDDPLIYWQRKISIWPALTQVAIQYLSC
               860       870       880        890       900        

             620       630       640       650       660       670 
pF1KSD TATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPEDQDEGEWGLDQ
              : .: . ..    .   :   .... .::  : ..                  
NP_001 PMCSWQSECIFTKNSHFHPKQIMSLDFDNIEQLMFLKMNLKNVNYDYSTLVLSWDPEQNE
      910       920       930       940       950       960        

             680       690    
pF1KSD EQVFSLGDGVSGGFFGIRDSSFL
                              
NP_001 VVQSSEKEILP            
      970                     




694 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:09:49 2016 done: Thu Nov  3 03:09:50 2016
 Total Scan time:  7.950 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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