Result of FASTA (ccds) for pF1KSDA0785
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0785, 694 aa
  1>>>pF1KSDA0785 694 - 694 aa - 694 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8147+/-0.000978; mu= 17.5449+/- 0.059
 mean_var=74.4144+/-14.407, 0's: 0 Z-trim(105.4): 17  B-trim: 5 in 1/50
 Lambda= 0.148678
 statistics sampled from 8416 (8425) to 8416 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.259), width:  16
 Scan time:  3.420

The best scores are:                                      opt bits E(32554)
CCDS14118.1 ZBED1 gene_id:9189|Hs108|chrX          ( 694) 4609 998.4       0
CCDS14118.1 ZBED1 gene_id:9189|Hs108|chrY          ( 694) 4609 998.4       0
CCDS33677.1 ZBED4 gene_id:9889|Hs108|chr22         (1171)  503 117.7 9.6e-26


>>CCDS14118.1 ZBED1 gene_id:9189|Hs108|chrX               (694 aa)
 initn: 4609 init1: 4609 opt: 4609  Z-score: 5339.0  bits: 998.4 E(32554):    0
Smith-Waterman score: 4609; 100.0% identity (100.0% similar) in 694 aa overlap (1-694:1-694)

               10        20        30        40        50        60
pF1KSD MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
              610       620       630       640       650       660

              670       680       690    
pF1KSD DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
       ::::::::::::::::::::::::::::::::::
CCDS14 DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
              670       680       690    

>>CCDS14118.1 ZBED1 gene_id:9189|Hs108|chrY               (694 aa)
 initn: 4609 init1: 4609 opt: 4609  Z-score: 5339.0  bits: 998.4 E(32554):    0
Smith-Waterman score: 4609; 100.0% identity (100.0% similar) in 694 aa overlap (1-694:1-694)

               10        20        30        40        50        60
pF1KSD MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
              610       620       630       640       650       660

              670       680       690    
pF1KSD DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
       ::::::::::::::::::::::::::::::::::
CCDS14 DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
              670       680       690    

>>CCDS33677.1 ZBED4 gene_id:9889|Hs108|chr22              (1171 aa)
 initn: 402 init1: 136 opt: 503  Z-score: 575.7  bits: 117.7 E(32554): 9.6e-26
Smith-Waterman score: 556; 25.0% identity (56.6% similar) in 647 aa overlap (20-650:558-1163)

                          10        20        30        40         
pF1KSD            MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRI
                                     .  ::.:..:..      :  .  :. :  
CCDS33 LASAESSSSKLTDLPTVVTKNNQVMFPVNSKKTSKLWNHFSI------CSADSTKVVCLH
       530       540       550       560             570       580 

      50        60        70        80        90       100         
pF1KSD CMAQIAYSGNTSNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDA
       :   :. . . .::.      : ..:   : . ::  . :  .. .   :....  : ..
CCDS33 CGRTISRGKKPTNLGTSCLLRHLQRFHSNVLK-TEVSETARPSSPDTRVPRGTELSGASS
             590       600       610        620       630       640

     110       120        130       140       150       160        
pF1KSD LAVKAGHGYDSKK-QQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYI
       .     . :::.   ...:. .  .:   : : :.::.  :. ::.   :.: ::. .:.
CCDS33 FDDTNEKFYDSHPVAKKITSLIAEMIALDLQPYSFVDNVGFNRLLEYLKPQYSLPAPSYF
              650       660       670       680       690       700

      170       180       190          200       210       220     
pF1KSD STKAIPEKYGAVREVILKELAEATWCGI---STDMWRSENQNRAYVTLAAHFLGLGAPN-
       :  :::  :  :...:...: ::   :.   .. .: : ::.: :.::.::.... .:  
CCDS33 SRTAIPGMYDNVKQIIMSHLKEAE-SGVIHFTSGIWMS-NQTREYLTLTAHWVSFESPAR
              710       720        730        740       750        

             230       240       250       260        270       280
pF1KSD --CLSMG-SRCLKTFEVPEENTAETITRVLYEVFIEWGISAKV-FGATTNYGKDIVKACS
         : .   :  : . .:  . ....: . :   .  :  :. .  : :.. . .: :.  
CCDS33 PRCDDHHCSALLDVSQVDCDYSGNSIQKQLECWWEAWVTSTGLQVGITVTDNASIGKT--
      760       770       780       790       800       810        

                290       300        310       320       330       
pF1KSD LLDVAVH--MPCLGHTFNAGIQQAFQLPKL-GALLSRCRKLVEYFQQSAVAMYMLYEKQK
        :. . :  . :..:: :  ...:..  ..   :::  ::. :  ..:  :   : : :.
CCDS33 -LNEGEHSSVQCFSHTVNLIVSEAIKSQRMVQNLLSLARKICERVHRSPKAKEKLAELQR
         820       830       840       850       860       870     

       340       350       360       370       380       390       
pF1KSD QQNVAHCMLVSNRVSWWGSTLAMLQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGL
       .  . .  :...  : :.... ::.:: ::. .:  . ::   : . ..  ..: .....
CCDS33 EYALPQHHLIQDVPSKWSTSFHMLERLIEQKRAINEMSVE--CNFRELISCDQWEVMQSV
         880       890       900       910         920       930   

       400       410       420        430          440       450   
pF1KSD VELLQPFKQVAEMLSASRYPTISMVKPLLHML-LNTTLNIKET---DSKELSMAKEVIAK
        . :.::. ... .: ... :.:.: :..:.:  .. . ..::   :.   :. ::....
CCDS33 CRALKPFEAASREMS-TQMSTLSQVIPMVHILNRKVEMLFEETMGIDTMLRSL-KEAMVS
           940        950       960       970       980        990 

           460       470       480       490       500       510   
pF1KSD ELSKTYQETPEIDMFLNVATFLDPRYKRLPFLSAFERQQVENRVVEEAKGLLDKVKDGGY
       .:: : .. :.  .:   ::.::::::   ...  : .: .. ...: . :.....    
CCDS33 RLSATLHD-PRY-VF---ATLLDPRYKA-SLFTEEEAEQYKQDLIRELE-LMNSTS----
             1000          1010       1020      1030       1040    

           520       530       540       550       560       570   
pF1KSD RPAEDKIFPVPEEPPVKKLMRTSTPPPASVINNMLAEIFCQTGGVEDQEEWHAQVVEELS
                  :.  ...   ...:   :. .. :  .  ..   . .:.    .:    
CCDS33 -----------EDVAASHRCDAGSPSKDSAAEENLWSLVAKVKKKDPREKLPEAMVLA--
                        1050      1060      1070      1080         

           580       590       600       610       620       630   
pF1KSD NFKSQKVLGLNEDPLKWWSDRLALFPLLPKVLQKYWCVTATRVAPERLFGSAANVVSAKR
        .  ..::  . ::: .:. . : .: :  .  ..     . :  :.::.. ..  :  .
CCDS33 -YLEEEVLEHSCDPLTYWNLKKASWPGLSALAVRFLGCPPSIVPSEKLFNTPTENGSLGQ
       1090      1100      1110      1120      1130      1140      

           640       650       660       670       680       690   
pF1KSD NRLAPAHVDEQVFLYENARSGAEAEPEDQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSF
       .::   : .. .::  :                                           
CCDS33 SRLMMEHFEKLIFLKVNLPLIYFQY                                   
       1150      1160      1170                                    




694 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:09:49 2016 done: Thu Nov  3 03:09:49 2016
 Total Scan time:  3.420 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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