Result of FASTA (omim) for pF1KSDA0757
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0757, 520 aa
  1>>>pF1KSDA0757 520 - 520 aa - 520 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5205+/-0.000364; mu= 9.0758+/- 0.023
 mean_var=147.5594+/-30.165, 0's: 0 Z-trim(118.9): 35  B-trim: 0 in 0/51
 Lambda= 0.105582
 statistics sampled from 32308 (32342) to 32308 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.379), width:  16
 Scan time: 10.850

The best scores are:                                      opt bits E(85289)
NP_001129245 (OMIM: 607662) spermatogenesis-associ ( 520) 3489 543.2  7e-154
NP_006029 (OMIM: 607662) spermatogenesis-associate ( 520) 3489 543.2  7e-154
XP_006723957 (OMIM: 607662) PREDICTED: spermatogen ( 520) 3489 543.2  7e-154
XP_011527418 (OMIM: 607662) PREDICTED: spermatogen ( 520) 3489 543.2  7e-154


>>NP_001129245 (OMIM: 607662) spermatogenesis-associated  (520 aa)
 initn: 3489 init1: 3489 opt: 3489  Z-score: 2883.6  bits: 543.2 E(85289): 7e-154
Smith-Waterman score: 3489; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)

               10        20        30        40        50        60
pF1KSD MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
              430       440       450       460       470       480

              490       500       510       520
pF1KSD DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR
       ::::::::::::::::::::::::::::::::::::::::
NP_001 DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR
              490       500       510       520

>>NP_006029 (OMIM: 607662) spermatogenesis-associated pr  (520 aa)
 initn: 3489 init1: 3489 opt: 3489  Z-score: 2883.6  bits: 543.2 E(85289): 7e-154
Smith-Waterman score: 3489; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)

               10        20        30        40        50        60
pF1KSD MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
              430       440       450       460       470       480

              490       500       510       520
pF1KSD DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR
       ::::::::::::::::::::::::::::::::::::::::
NP_006 DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR
              490       500       510       520

>>XP_006723957 (OMIM: 607662) PREDICTED: spermatogenesis  (520 aa)
 initn: 3489 init1: 3489 opt: 3489  Z-score: 2883.6  bits: 543.2 E(85289): 7e-154
Smith-Waterman score: 3489; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)

               10        20        30        40        50        60
pF1KSD MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
              430       440       450       460       470       480

              490       500       510       520
pF1KSD DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR
       ::::::::::::::::::::::::::::::::::::::::
XP_006 DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR
              490       500       510       520

>>XP_011527418 (OMIM: 607662) PREDICTED: spermatogenesis  (520 aa)
 initn: 3489 init1: 3489 opt: 3489  Z-score: 2883.6  bits: 543.2 E(85289): 7e-154
Smith-Waterman score: 3489; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)

               10        20        30        40        50        60
pF1KSD MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
              430       440       450       460       470       480

              490       500       510       520
pF1KSD DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR
       ::::::::::::::::::::::::::::::::::::::::
XP_011 DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR
              490       500       510       520




520 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:56:31 2016 done: Thu Nov  3 02:56:33 2016
 Total Scan time: 10.850 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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