hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/smart.HMMs.bin Sequence file: /tmp/20080305/iprscan-20080305-19171737/chunk_1/iprscan-20080305-19171737.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KSDA0677 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00558 225.5 4.4e-63 1 SM00333 112.7 4.2e-29 2 SM00545 84.6 1.2e-20 1 SM00249 64.0 1.9e-14 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00545 1/1 13 55 .. 1 45 [] 84.6 1.2e-20 SM00558 1/1 142 308 .. 1 214 [] 225.5 4.4e-63 SM00249 1/2 709 767 .. 1 39 [] 30.7 0.00021 SM00249 2/2 829 885 .. 1 39 [] 33.3 3.3e-05 SM00333 1/2 897 954 .. 1 60 [] 50.8 1.8e-10 SM00333 2/2 955 1011 .. 1 60 [] 61.9 8.3e-14 Alignments of top-scoring domains: SM00545: domain 1 of 1, from 13 to 55: score 84.6, E = 1.2e-20 *->eiPvfyPteeEFkDplaYIskIrpqgGeAekyGIvKvVPPknWkP<- +i++fyPt+eEF+++++YI++I++ +G A+++G +KvVPPk+WkP pF1KSDA067 13 RIMTFYPTMEEFRNFSRYIAYIES-QG-AHRAGLAKVVPPKEWKP 55 * pF1KSDA067 - - SM00558: domain 1 of 1, from 142 to 308: score 225.5, E = 4.4e-63 *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv + + ++wn+ +l ++l+ ++ke + +i g+++ pF1KSDA067 142 EKHVDEWNIGRLR--------------TILDLVEKE-SGITIEGVNT 173 gkPkpkpylymGmaEsrgstTpwHiDdydlySvNylhqgagedGKrWyli pyly+Gm+ ++++ wH++d+dlyS+Nylh+g++ K Wy + pF1KSDA067 174 ------PYLYFGMW---KTSFAWHTEDMDLYSINYLHFGEP---KSWYSV 211 Ppedaeklekllkkhgkefhistapdlfkeqpdllihlstwispevlkkr Ppe+ +le+l+k + +p++++++ +l+h++t+isp +lkk pF1KSDA067 212 PPEHGKRLERLAKGF--------FPGSAQSCEAFLRHKMTLISPLMLKKY 253 lkeeperPlfqgvpvyrfvQkpGefvfiPpGwyHaVfnlGkfniavavNF + +p +++Q++Gef++++p+ yHa+fn+G fn+a++ NF pF1KSDA067 254 G-----------IPFDKVTQEAGEFMITFPYGYHAGFNHG-FNCAESTNF 291 aspewlpmglrlveelr<-* a+ +w+++g+++v + + pF1KSDA067 292 ATRRWIEYGKQAVLCSC 308 SM00249: domain 1 of 2, from 709 to 767: score 30.7, E = 0.00021 *->yCvCgk..................g.llqCdkgCdrwyHv.Clgppl +C+ + +++ + +++ ++++++ l++C +C++ +H +C+g p+ pF1KSDA067 709 MCFTSTgcstdinlstpyleedgtSiLVSCK-KCSVRVHAsCYGVPP 754 eepdg.wyCprCk<-* +++w C+rC+ pF1KSDA067 755 AKASEdWMCSRCS 767 SM00249: domain 2 of 2, from 829 to 885: score 33.3, E = 3.3e-05 *->yC.vCgk......g.llqCd.kgCdrwyHv.Clgpple.......ep C +C+k+++++ g ++qC++++C++++Hv+C++ ++ ++++ + pF1KSDA067 829 KCiFCKKrrkrtaGcCVQCShGRCPTAFHVsCAQAAGVmmqpddwPF 875 dg.wyCprCk<-* C r+k pF1KSDA067 876 VVfITCFRHK 885 SM00333: domain 1 of 2, from 897 to 954: score 50.8, E = 1.8e-10 *->pkfkvGdlvaarwseDgewYrArIikvdsenqlyeVffiDyGneevv + + +G++v+ +++ +g++Y +++++ ++e ++yeV+f+D +++++ pF1KSDA067 897 QSITAGQKVISKHK-NGRFYQCEVVRLTTE-TFYEVNFDDGSFSDNL 941 plsdlrqlpekfa<-* +++d+ + ++ ++ pF1KSDA067 942 YPEDIVSQDCLQF 954 SM00333: domain 2 of 2, from 955 to 1011: score 61.9, E = 8.3e-14 *->pkfkvGdlvaarwseDgewYrArIikvdsenqlyeVffiDyGneevv +++++G++v++rw+ Dg+ Y A+ ++ + q+y+V f+D G++ vv pF1KSDA067 955 GPPAEGEVVQVRWT-DGQVYGAKFVASHPI-QMYQVEFED-GSQLVV 998 plsdlrqlpekfa<-* +++d+++l+e+++ pF1KSDA067 999 KRDDVYTLDEELP 1011 //