GENSCAN 1.0	Date run:  3-Nov-116	Time: 02:28:29

Sequence gi568815591r:28855614_29058046 : 202433 bp : 40.62% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.11 PlyA -   2505   2500    6                               1.05
 1.10 Term -  12185  12086  100  1  1  105   48   100 0.438   4.32
 1.09 Intr -  27506  27337  170  2  2   92   47    39 0.015  -1.98
 1.08 Intr -  30478  30374  105  1  0   45   63    94 0.080   2.09
 1.07 Intr -  34894  34861   34  0  1   62   76    76 0.476   1.11
 1.06 Intr -  39752  39596  157  0  1   81   95   101 0.937   8.25
 1.05 Intr -  68841  68721  121  0  1   34   94    51 0.005  -0.55
 1.04 Intr -  71109  70986  124  2  1   64   99    62 0.069   4.57
 1.03 Intr -  71368  71215  154  2  1   72  -13   175 0.070   4.01
 1.02 Intr -  71606  71457  150  0  0   78   42    82 0.678   1.81
 1.01 Init -  72660  72570   91  0  1   37   92    74 0.872   3.41
 1.00 Prom -  72762  72723   40                             -10.45

 2.00 Prom +  73055  73094   40                              -6.15
 2.01 Init +  78839  78992  154  1  1   79   79   153 0.862  13.69
 2.02 Term +  96288  96493  206  1  2   37   48   146 0.111   2.05
 2.03 PlyA +  96997  97002    6                               1.05

 3.02 PlyA -  97194  97189    6                               1.05
 3.01 Sngl - 102433  99998 2436  1  0   87   42  3036 0.999 289.08
 3.00 Prom - 110236 110197   40                              -4.85

 4.07 PlyA - 110327 110322    6                               1.05
 4.06 Term - 118922 118726  197  0  2   45   37   240 0.652  11.19
 4.05 Intr - 122146 121960  187  1  1  104   23   111 0.626   4.54
 4.04 Intr - 123764 123539  226  1  1   83   50    50 0.451  -2.24
 4.03 Intr - 130017 129862  156  2  0    7   98   176 0.598   8.70
 4.02 Intr - 132349 132220  130  2  1   90   64   110 0.625   7.63
 4.01 Init - 133967 133823  145  2  1   46   64    75 0.330   1.23
 4.00 Prom - 139633 139594   40                              -5.35

 5.03 PlyA - 139643 139638    6                               1.05
 5.02 Term - 140269 140159  111  1  0  112   37   136 0.988   8.48
 5.01 Init - 144086 144057   30  2  0   47   96    42 0.436   0.70
 5.00 Prom - 151934 151895   40                              -3.15

 6.00 Prom + 152127 152166   40                              -5.45
 6.01 Init + 152401 152490   90  0  0   54   89    38 0.182   1.04
 6.02 Intr + 158413 158658  246  0  0  129   44   108 0.221   7.23
 6.03 Intr + 163738 163796   59  0  2   78   48   126 0.176   4.36
 6.04 Term + 164349 164484  136  0  1   84   48    53 0.189  -2.59
 6.05 PlyA + 164789 164794    6                               1.05

 7.00 Prom + 166059 166098   40                              -5.25
 7.01 Sngl + 166113 166586  474  2  0   43   38   278 0.908  14.16
 7.02 PlyA + 167589 167594    6                               1.05

 8.06 PlyA - 170409 170404    6                              -0.45
 8.05 Term - 173696 173682   15  2  0  113   40    10 0.436  -4.04
 8.04 Intr - 175146 174964  183  0  0   84   91   223 0.678  21.26
 8.03 Intr - 178004 177971   34  1  1  109   98    -1 0.401   0.31
 8.02 Intr - 186522 186403  120  2  0   34   75    95 0.002   1.49
 8.01 Init - 202054 201849  206  1  2   51   38   121 0.008   1.77

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  39986  39833  154  2  1   44    9   138 0.828   1.69
S.002 Term + 188267 188464  198  1  0   65   47   202 0.946  10.22


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591r:28855614_29058046|GENSCAN_predicted_peptide_1|401_aa
MGEREDNAYALMGLPGFLPVSSFAPYKTPGAYCPLAVTSLCSTRKRGTNTNRFLRMKPRR
ELAGGSGRGSTSRVTSGFADSPSGTLLLPPGYRTSSLQREFKATSMLNRKSILWVEISDE
ERFPNARKGVATGASYFASAPLLSPCPSPDHLVNLSGTGTVLQMHVFVVLRALVGPGHHS
VRVREASRAAHGRGEQFGCARQGLDSSPAQYLPEIAAVIPTFSNQHSDQSATIRIKARPS
TSKDYNLQKAQMIIGIFKQLRNFKLRKQLEKPDRQALDRWSDTRYSIELEAEVIFRSYFS
SECYFLVNSEDPMYDTPKGSLSRGSMTQESHLISRSFQLLARLSVNLTLMQSFVPEAGTS
LVYAGKSQSHPDPHQLPNPMERANHVLVEVFPDLFEQLIPQ

>gi568815591r:28855614_29058046|GENSCAN_predicted_CDS_1|1206_bp
atgggagaaagagaagacaatgcctacgcccttatgggcctaccaggctttctacctgtg
agctcatttgctccttacaagaccccaggagcatattgccctctagcggtcacttctctt
tgtagcacacggaagagaggcaccaatacaaatcgctttttaagaatgaaacccaggagg
gaactggctgggggaagtggacgtggttccacgagccgggtaacttctggcttcgcggat
tcacccagtggcactttgcttctcccgccgggataccggacctcttctttgcagagagaa
ttcaaagctacttccatgttaaacagaaagagcatcctgtgggtagaaatatccgacgag
gagcgttttccgaatgcccggaagggagttgctactggagccagctactttgcaagtgct
ccccttctttctccttgcccatccccagaccatttagttaacctcagtgggacaggaacc
gtcctacaaatgcatgtgtttgtcgtcttaagagctttggtaggtcctggccatcatagc
gtcagggtccgggaagcaagcagggcggctcatggacgaggagagcagtttgggtgtgca
agacaaggtctggattcaagtcctgctcagtacttaccagaaattgccgcagtaattcca
accttcagcaaccaacactctgatcagtcagcaaccatccgcatcaaagcaagaccctcc
accagcaaagattacaacttgcagaaggctcagatgatcattggcatttttaaacaatta
agaaattttaaattaagaaagcagcttgaaaaaccagaccggcaagcattggacagatgg
tctgataccaggtactccattgagctggaagcggaagttatcttcaggtcatatttctca
agtgaatgctatttcctggtgaattctgaagacccaatgtatgacacacccaaaggaagt
ctaagcaggggctcaatgacacaagaatcacacctcatctcaaggtccttccagcttctg
gcaaggctttctgtgaacttgacacttatgcagagttttgttcctgaggcaggcacctcc
cttgtatatgcaggaaaaagccagagccatcctgacccccatcaactccccaaccccatg
gaaagggcaaatcacgtcctcgtggaagtcttccctgatctctttgagcagctcatcccc
cagtga

>gi568815591r:28855614_29058046|GENSCAN_predicted_peptide_2|119_aa
MELLKLQWNPEDEDKLGMCRKGRQVLREEGTACTALWGSDVELHGSMGLGHSVGTDFMTK
TPKTTATKAKIDKWDLIKLKSCCTAKETINRVNRQATIEWEKIFANCASDKASVRNLNL

>gi568815591r:28855614_29058046|GENSCAN_predicted_CDS_2|360_bp
atggagttgctgaagctccagtggaatccagaggatgaagacaagcttggcatgtgtaga
aaggggagacaggtattgcgggaggaaggaactgcgtgcactgccttgtgggggagtgat
gtggaacttcatggatcaatgggactggggcacagcgtgggcacagatttcatgacaaag
acaccaaaaacaacggcaacaaaagcaaaaattgacaaatgggatctaattaaacttaag
agctgctgtacagcaaaagaaactatcaacagagtcaacagacaagctaccattgaatgg
gagaaaatatttgcaaactgtgcatctgacaaagcatctgtaaggaacttaaatttataa

>gi568815591r:28855614_29058046|GENSCAN_predicted_peptide_3|811_aa
MEAARALRLLLVVCGCLALPPLAEPVCPERCDCQHPQHLLCTNRGLRVVPKTSSLPSPHD
VLTYSLGGNFITNITAFDFHRLGQLRRLDLQYNQIRSLHPKTFEKLSRLEELYLGNNLLQ
ALAPGTLAPLRKLRILYANGNEISRLSRGSFEGLESLVKLRLDGNALGALPDAVFAPLGN
LLYLHLESNRIRFLGKNAFAQLGKLRFLNLSANELQPSLRHAATFAPLRSLSSLILSANN
LQHLGPRIFQHLPRLGLLSLRGNQLTHLAPEAFWGLEALRELRLEGNRLSQLPTALLEPL
HSLEALDLSGNELSALHPATFGHLGRLRELSLRNNALSALSGDIFAASPALYRLDLDGNG
WTCDCRLRGLKRWMGDWHSQGRLLTVFVQCRHPPALRGKYLDYLDDQQLQNGSCADPSPS
ASLTADRRRQPLPTAAGEEMTPPAGLAEELPPQPQLQQQGRFLAGVAWDGAARELVGNRS
ALRLSRRGPGLQQPSPSVAAAAGPAPQSLDLHKKPQRGRPTRADPALAEPTPTASPGSAP
SPAGDPWQRATKHRLGTEHQERAAQSDGGAGLPPLVSDPCDFNKFILCNLTVEAVGADSA
SVRWAVREHRSPRPLGGARFRLLFDRFGQQPKFHRFVYLPESSDSATLRELRGDTPYLVC
VEGVLGGRVCPVAPRDHCAGLVTLPEAGSRGGVDYQLLTLALLTVNALLVLLALAAWASR
WLRRKLRARRKGGAPVHVRHMYSTRRPLRSMGTGVSADFSGFQSHRPRTTVCALSEADLI
EFPCDRFMDSAGGGAGGSLRREDRLLQRFAD

>gi568815591r:28855614_29058046|GENSCAN_predicted_CDS_3|2436_bp
atggaggctgcccgcgccttgcgcctcctgctcgtggtgtgcggctgcctcgcgctcccg
ccgctggccgagcccgtgtgcccggagcgctgcgactgccagcatccccagcatctcctg
tgcaccaacagggggctccgcgtagtgcccaagaccagctcgctgccgagcccccacgac
gtgctcacctacagcctcggcggcaacttcataaccaacatcacggccttcgacttccac
cgtctggggcagctcagacggctggacctgcagtacaaccagatccgctctctgcacccc
aagaccttcgagaagctctcgcggctggaagagctgtacctggggaacaacctcttgcag
gcgctcgccccgggcacgctggccccgctgcgcaagctgcgcatcctctacgccaacggg
aacgagatcagccgcctaagccgcggctccttcgagggcctggagagtctagtcaagctg
cggctggacgggaacgccctgggggcgctgccggacgcggtcttcgctcccttgggcaac
ctgctctacctacatctggagtccaaccggatccgctttctgggcaagaacgccttcgcc
cagctaggcaagctgcgcttcctcaacctctctgccaacgagctacagccctccctgcgc
cacgcggccaccttcgcaccgctgcgctccctctcctccctcatcctctcggccaacaac
ctgcagcacctcgggccgcgcatcttccagcacctgccacgtctcggcctgctctcgctc
aggggcaaccagctcacgcacctcgcgcctgaggccttttggggcttggaggccctgcgc
gagctgcgcctggagggtaatcggctgagccagctgccaactgcgctgctggagcctctg
cacagcctggaggcgctggacctgagcggcaatgagctgtccgccctgcacccggccacc
ttcggccacctgggccggctgcgcgagctcagcctgcgcaacaacgcgctcagcgcccta
tccggggacatcttcgccgccagcccagccctttatcggctggatctagacggcaacggc
tggacctgcgactgccggctgcgaggcctgaagcgctggatgggcgactggcactcgcag
ggccggctcctcactgtcttcgtgcagtgtcgccaccccccggccctgcgaggcaaatac
ctggattacctggatgaccagcagctgcaaaatggatcctgcgcggatccctcgccctca
gcttccctgaccgctgaccgcaggcggcagcccctacccacggccgcaggggaggagatg
acgccacctgcaggtctcgcggaggagctgccgccgcagccgcagctccagcagcagggg
cgatttctagctggggtggcctgggatggggccgccagggagctggtaggcaaccgcagc
gccctaaggctgagtcggcggggcccgggcctccagcagcccagcccctccgtcgctgcc
gccgcgggcccggctccacagtccctagacctgcacaagaagccccagcggggccgtccg
actcgggcagatcccgccctcgcggagcccaccccaacggcctctcctggctctgcgcca
tcgcccgccggcgacccctggcagcgcgcgacgaagcatcgtctgggcacggagcaccag
gagcgtgccgcccagtccgacggtggggccgggctgccgccgctggtgtccgacccatgc
gacttcaacaagttcattctgtgcaacctgacggtggaggcggtgggcgcagacagcgcc
tcggtgcgctgggccgtgcgcgagcaccgcagtccccggccgctgggcggcgcgcgcttc
cgcctgctctttgaccgctttggccagcagcccaagttccaccgcttcgtctacctgcct
gagagcagcgactcggccacgctgcgcgagctgcgcggggacaccccctacctggtgtgc
gtggagggcgtgcttgggggccgtgtctgccctgtggctccccgggaccactgcgcgggg
ctggtcaccctaccggaggccgggagccggggcggcgtcgactaccagctgctgaccttg
gccctgctgacggtcaacgcgctgctggtgctcctggccttggcggcctgggcgtctcgc
tggctgcgtaggaaactgcgggctaggcggaagggcggggccccggtccacgttcggcac
atgtactccacccgacggcccctgcgctccatgggcaccggcgtgtccgccgacttctcg
ggattccagtcgcaccggccacgcaccaccgtgtgcgcgctcagtgaggcggacctcatc
gaattcccctgcgaccgcttcatggacagtgcgggcggcggcgcgggcggcagcctgaga
cgggaggaccgtctcctgcagcgatttgccgactag

>gi568815591r:28855614_29058046|GENSCAN_predicted_peptide_4|346_aa
MGTDAYEGKAGDHCINNPSVPPTLIDEGPKCFENRGQRMTNYSKPRSGAPGAGVTPTFEA
QGAAGLCDEPFLPLCPKPPSEENNLAFGVDSRAGVKGSHESHLYWAESMTGTEDQQGAQA
LRREAQLPQGELGDFSAIEGGSSSQQLKLVVWGSFLGKIIETFIFEGSKSLAVLQVAILF
QKLLLLDMEVLRGTQENFQGFRHSPLCHHCVSRQPNYSLITCSVFGPERAPLTTFLIWAA
MLQQSTSTWCLQTARDHLRTRPKCFLSLSTVNPKRSQMWTDVIMANGVKTYGDGYISIEK
ADYKTACSQTQPVSQIPKGPWRKAAVDGPTMSREDSAMAQEATHGF

>gi568815591r:28855614_29058046|GENSCAN_predicted_CDS_4|1041_bp
atggggacagatgcttatgaagggaaggctggtgaccactgcataaataatcccagtgtg
ccacctactttaatagatgaaggtccgaagtgctttgagaacagaggacagaggatgact
aattactccaaaccaaggagtggggccccaggtgcaggtgtaacccccacctttgaagcc
caaggtgctgctggtctttgtgatgagccatttctccccctctgcccaaagccaccaagt
gaagaaaacaacttggcatttggagtagacagcagggctggagtgaagggcagccatgaa
tctcacttgtattgggcagagtccatgaccggcactgaggaccagcaaggggcccaggcc
ctgagaagagaagctcagctaccccagggagagcttggtgatttcagtgccatagaaggt
ggcagctcaagccagcaactgaagttagttgtctggggttcttttcttggcaagattatt
gaaaccttcatttttgaagggtctaagtctttagctgtcctgcaggttgcaatattattc
cagaaacttttactcttggacatggaagtgctaagaggcacccaggagaatttccagggc
ttcagacatagtcctctctgccaccattgtgtgtcacggcaacccaattactccctgata
acatgctcagtgtttggtcctgagagagctcctcttaccacgttcctgatttgggctgca
atgcttcagcagtccacatctacctggtgcctgcaaactgcaagggaccatctgcgaacc
aggcccaaatgttttcttagtctgtcaacagtcaatcctaagaggtcacagatgtggact
gatgtaataatggcaaatggtgtgaaaacatatggagatggttatatctccatagagaag
gcagactacaaaacagcatgttctcagacacagccagtttcccagatccccaagggacca
tggagaaaggcagctgtggatggtcctaccatgagccgtgaggattctgccatggcccaa
gaagcaactcatgggttttaa

>gi568815591r:28855614_29058046|GENSCAN_predicted_peptide_5|46_aa
MAAQKLDQGQVIIRGGGHILPYDQPLRAFDMINRFIYGKGWDPYVG

>gi568815591r:28855614_29058046|GENSCAN_predicted_CDS_5|141_bp
atggcagctcagaaattggaccagggtcaggtaattattcgaggtggaggacatatttta
ccctatgaccagcctctgagagcttttgacatgattaatcgattcatttatggaaaagga
tgggatccttatgttggataa

>gi568815591r:28855614_29058046|GENSCAN_predicted_peptide_6|176_aa
MERVAKKEVMWGKIKHTKIAKNERQMGVFQVLVSNKLFAPQTLPQCLLLEDLTCDFREAL
WLGGGVWFDYCVLVFCPQSDFHKWTEELCPCLEDRDKEPVKEDIHHCRRRLLVRANKEEQ
EALALHRISEGCQRSTISSLNVFCIHKKSQRVECDICHQFLTGGQFLLPPLWDLSP

>gi568815591r:28855614_29058046|GENSCAN_predicted_CDS_6|531_bp
atggagagagttgccaagaaggaggtaatgtggggaaagatcaagcataccaagattgcc
aagaatgaaaggcaaatgggagttttccaggtgttggtctctaacaaactatttgcaccc
caaactttgcctcagtgcctgcttttggaggacctaacctgtgacttcagagaagctctc
tggctgggaggtggggtgtggtttgattactgtgttctggttttctgcccacagtcagat
ttccataagtggacagaggaactttgcccctgtctggaagatagagacaaagaacccgtg
aaagaggacatccatcattgtagaaggcgactgctggtcagagccaacaaggaggaacaa
gaagcacttgctcttcatcggatctctgaaggctgccagaggagtaccatttcatctcta
aatgtgttttgcattcacaagaagagtcagcgggttgagtgtgatatttgccaccagttt
ctgactggcggccaattccttttaccacctctgtgggacttgtcgccctga

>gi568815591r:28855614_29058046|GENSCAN_predicted_peptide_7|157_aa
MFTLGPTHPLRFKQLRHGAILRGRPPPDYITPLGPNTHYISTSLNPCRHPPTSTQRFTAS
RYWLEPAVQMRPQNFSSCNVLRPKEWVVKHTGEAALGTKGAKACTLQSLRAACLGLLPLT
ANPYPPAAGWLHTCTYLNRAWELAHPGTVQGPEDRPI

>gi568815591r:28855614_29058046|GENSCAN_predicted_CDS_7|474_bp
atgttcacactgggtcccacacatcccctgagattcaagcagctacggcatggtgccatt
ttgagaggccggcccccaccagactacatcacacctttggggcccaatacccactacata
tctacatccctgaacccctgcagacacccccctacatctactcaaaggtttacagcatca
cgatactggctggagccagcagtgcagatgcgtccccaaaactttagctcatgcaatgtc
ttacgccccaaggaatgggtagtgaaacacactggggaggctgccctagggacaaaggga
gccaaagcatgtactctccagagcctgagagctgcctgcctggggctgttgccactgaca
gcaaatccttaccccccagcagcagggtggctgcacacctgcacatatcttaacagggcc
tgggaactggctcacccaggcactgtccaaggacctgaggacaggcccatctag

>gi568815591r:28855614_29058046|GENSCAN_predicted_peptide_8|185_aa
MFSEWIVDLKVKHKTITLVGINLGENLNDLGYGVDVSDTMLKEQSMKEIIEKLDIIKINN
FYFTKNNVNFMNRRPLLREWLSLEVTYFCYFAAIDREDQFSFQYIPNPRPCCLKYQQALG
VLIYNGQLDIIVAAALTERSLMGMDWKGSQEYKKAEKKVWKIFKSDSEVAGYIRQAGDFH
QKNIK

>gi568815591r:28855614_29058046|GENSCAN_predicted_CDS_8|558_bp
atgttctctgaatggattgtagacctaaaggtaaaacataaaactataacacttgtaggc
attaacttaggagaaaatctaaatgaccttgggtatggtgttgatgtttcagatacaatg
ctaaaggaacaatccatgaaagaaataattgagaagctggacatcattaaaattaataac
ttctactttaccaaaaacaatgtcaacttcatgaaccgcagaccgctcctccgagagtgg
ctgtccttggaagttacttacttctgttacttcgcagctattgacagagaggaccaattt
tctttccagtatataccaaacccaagaccttgttgcttaaaataccagcaagccttaggg
gttctgatctacaatggccaactggacatcatcgtggcagctgccctgacagagcgctcc
ttgatgggcatggactggaaaggatcccaggaatacaagaaggcagaaaaaaaagtttgg
aagatctttaaatctgacagtgaagtggctggttacatccggcaagcgggtgacttccat
cagaaaaatatcaagtag