FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0607, 712 aa
  1>>>pF1KSDA0607 712 - 712 aa - 712 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3284+/-0.000833; mu= 19.9758+/- 0.050
 mean_var=66.8809+/-13.157, 0's: 0 Z-trim(107.2): 15  B-trim: 3 in 1/51
 Lambda= 0.156828
 statistics sampled from 9455 (9460) to 9455 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.291), width:  16
 Scan time:  3.410

The best scores are:                                      opt bits E(32554)
CCDS30672.1 NCDN gene_id:23154|Hs108|chr1          ( 712) 4722 1077.5       0
CCDS392.1 NCDN gene_id:23154|Hs108|chr1            ( 729) 4722 1077.5       0


>>CCDS30672.1 NCDN gene_id:23154|Hs108|chr1               (712 aa)
 initn: 4722 init1: 4722 opt: 4722  Z-score: 5766.4  bits: 1077.5 E(32554):    0
Smith-Waterman score: 4722; 100.0% identity (100.0% similar) in 712 aa overlap (1-712:1-712)

               10        20        30        40        50        60
pF1KSD MASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD TARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPEC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD YRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAGSSGSKFLALLVNLACVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 YRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAGSSGSKFLALLVNLACVE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD VRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQKVQLVSVMKEAIGAVIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQKVQLVSVMKEAIGAVIH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD YLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPFLVRYAKTLYEEAEEAND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 YLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPFLVRYAKTLYEEAEEAND
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCKYFLQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCKYFLQQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD WELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPALV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 WELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPALV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD QQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD AVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 AVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPN
              610       620       630       640       650       660

              670       680       690       700       710  
pF1KSD SVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMAALEQCLSEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMAALEQCLSEP
              670       680       690       700       710  

>>CCDS392.1 NCDN gene_id:23154|Hs108|chr1                 (729 aa)
 initn: 4722 init1: 4722 opt: 4722  Z-score: 5766.2  bits: 1077.5 E(32554):    0
Smith-Waterman score: 4722; 100.0% identity (100.0% similar) in 712 aa overlap (1-712:18-729)

                                10        20        30        40   
pF1KSD                  MASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVT
                        :::::::::::::::::::::::::::::::::::::::::::
CCDS39 MSCCDLAAAGQLGKASIMASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVT
               10        20        30        40        50        60

            50        60        70        80        90       100   
pF1KSD KAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 KAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPEL
               70        80        90       100       110       120

           110       120       130       140       150       160   
pF1KSD AAHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 AAHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSA
              130       140       150       160       170       180

           170       180       190       200       210       220   
pF1KSD LCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFEL
              190       200       210       220       230       240

           230       240       250       260       270       280   
pF1KSD CQLLPLFLPPTTVPPECYRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 CQLLPLFLPPTTVPPECYRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAG
              250       260       270       280       290       300

           290       300       310       320       330       340   
pF1KSD SSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 SSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQ
              310       320       330       340       350       360

           350       360       370       380       390       400   
pF1KSD KVQLVSVMKEAIGAVIHYLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 KVQLVSVMKEAIGAVIHYLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPF
              370       380       390       400       410       420

           410       420       430       440       450       460   
pF1KSD LVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREI
              430       440       450       460       470       480

           470       480       490       500       510       520   
pF1KSD LIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDA
              490       500       510       520       530       540

           530       540       550       560       570       580   
pF1KSD CFTSLMNTLMTSLPALVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 CFTSLMNTLMTSLPALVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAI
              550       560       570       580       590       600

           590       600       610       620       630       640   
pF1KSD LFLSQSHVARATPGSDQAVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LFLSQSHVARATPGSDQAVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALR
              610       620       630       640       650       660

           650       660       670       680       690       700   
pF1KSD SRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 SRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMA
              670       680       690       700       710       720

           710  
pF1KSD ALEQCLSEP
       :::::::::
CCDS39 ALEQCLSEP
                




712 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:16:31 2016 done: Thu Nov  3 02:16:32 2016
 Total Scan time:  3.410 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]