Result of FASTA (ccds) for pF1KSDA0582
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0582, 757 aa
  1>>>pF1KSDA0582 757 - 757 aa - 757 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4520+/-0.000877; mu= 1.7022+/- 0.052
 mean_var=221.3121+/-44.851, 0's: 0 Z-trim(114.2): 24  B-trim: 0 in 0/53
 Lambda= 0.086213
 statistics sampled from 14745 (14765) to 14745 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.454), width:  16
 Scan time:  4.740

The best scores are:                                      opt bits E(32554)
CCDS1880.2 CEP68 gene_id:23177|Hs108|chr2          ( 757) 5164 655.4 9.5e-188
CCDS82457.1 CEP68 gene_id:23177|Hs108|chr2         ( 620) 3395 435.3 1.4e-121


>>CCDS1880.2 CEP68 gene_id:23177|Hs108|chr2               (757 aa)
 initn: 5164 init1: 5164 opt: 5164  Z-score: 3484.1  bits: 655.4 E(32554): 9.5e-188
Smith-Waterman score: 5164; 100.0% identity (100.0% similar) in 757 aa overlap (1-757:1-757)

               10        20        30        40        50        60
pF1KSD MALGEEKAEAEASEDTKAQSYGRGSCRERELDIPGPMSGEQPPRLEAEGGLISPVWGAEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MALGEEKAEAEASEDTKAQSYGRGSCRERELDIPGPMSGEQPPRLEAEGGLISPVWGAEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD IPAPTCWIGTDPGGPSRAHQPQASDANREPVAERSEPALSGLPPATMGSGDLLLSGESQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 IPAPTCWIGTDPGGPSRAHQPQASDANREPVAERSEPALSGLPPATMGSGDLLLSGESQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EKTKLSSSEEFPQTLSLPRTTTICSGHDADTEDDPSLADLPQALDLSQQPHSSGLSCLSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 EKTKLSSSEEFPQTLSLPRTTTICSGHDADTEDDPSLADLPQALDLSQQPHSSGLSCLSQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD WKSVLSPGSAAQPSSCSISASSTGSSLQGHQERAEPRGGSLAKVSSSLEPVVPQEPSSVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 WKSVLSPGSAAQPSSCSISASSTGSSLQGHQERAEPRGGSLAKVSSSLEPVVPQEPSSVV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD GLGPRPQWSPQPVFSGGDASGLGRRRLSFQAEYWACVLPDSLPPSPDRHSPLWNPNKEYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 GLGPRPQWSPQPVFSGGDASGLGRRRLSFQAEYWACVLPDSLPPSPDRHSPLWNPNKEYE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD DLLDYTYPLRPGPQLPKHLDSRVPADPVLQDSGVDLDSFSVSPASTLKSPTNVSPNCPPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 DLLDYTYPLRPGPQLPKHLDSRVPADPVLQDSGVDLDSFSVSPASTLKSPTNVSPNCPPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD EATALPFSGPREPSLKQWPSRVPQKQGGMGLASWSQLASTPRAPGSRDARWERREPALRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 EATALPFSGPREPSLKQWPSRVPQKQGGMGLASWSQLASTPRAPGSRDARWERREPALRG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD AKDRLTIGKHLDMGSPQLRTRDRGWPSPRPEREKRTSQSARRPTCTESRWKSEEEVESDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 AKDRLTIGKHLDMGSPQLRTRDRGWPSPRPEREKRTSQSARRPTCTESRWKSEEEVESDD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD EYLALPARLTQVSSLVSYLGSISTLVTLPTGDIKGQSPLEVSDSDGPASFPSSSSQSQLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 EYLALPARLTQVSSLVSYLGSISTLVTLPTGDIKGQSPLEVSDSDGPASFPSSSSQSQLP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD PGAALQGSGDPEGQNPCFLRSFVRAHDSAGEGSLGSSQALGVSSGLLKTRPSLPARLDRW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 PGAALQGSGDPEGQNPCFLRSFVRAHDSAGEGSLGSSQALGVSSGLLKTRPSLPARLDRW
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD PFSDPDVEGQLPRKGGEQGKESLVQCVKTFCCQLEELICWLYNVADVTDHGTAARSNLTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 PFSDPDVEGQLPRKGGEQGKESLVQCVKTFCCQLEELICWLYNVADVTDHGTAARSNLTS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD LKSSLQLYRQFKKDIDEHQSLTESVLQKGEILLQCLLENTPVLEDVLGRIAKQSGELESH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LKSSLQLYRQFKKDIDEHQSLTESVLQKGEILLQCLLENTPVLEDVLGRIAKQSGELESH
              670       680       690       700       710       720

              730       740       750       
pF1KSD ADRLYDSILASLDMLAGCTLIPDKKPMAAMEHPCEGV
       :::::::::::::::::::::::::::::::::::::
CCDS18 ADRLYDSILASLDMLAGCTLIPDKKPMAAMEHPCEGV
              730       740       750       

>>CCDS82457.1 CEP68 gene_id:23177|Hs108|chr2              (620 aa)
 initn: 3395 init1: 3395 opt: 3395  Z-score: 2296.3  bits: 435.3 E(32554): 1.4e-121
Smith-Waterman score: 3966; 81.9% identity (81.9% similar) in 757 aa overlap (1-757:1-620)

               10        20        30        40        50        60
pF1KSD MALGEEKAEAEASEDTKAQSYGRGSCRERELDIPGPMSGEQPPRLEAEGGLISPVWGAEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MALGEEKAEAEASEDTKAQSYGRGSCRERELDIPGPMSGEQPPRLEAEGGLISPVWGAEG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD IPAPTCWIGTDPGGPSRAHQPQASDANREPVAERSEPALSGLPPATMGSGDLLLSGESQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 IPAPTCWIGTDPGGPSRAHQPQASDANREPVAERSEPALSGLPPATMGSGDLLLSGESQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EKTKLSSSEEFPQTLSLPRTTTICSGHDADTEDDPSLADLPQALDLSQQPHSSGLSCLSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EKTKLSSSEEFPQTLSLPRTTTICSGHDADTEDDPSLADLPQALDLSQQPHSSGLSCLSQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD WKSVLSPGSAAQPSSCSISASSTGSSLQGHQERAEPRGGSLAKVSSSLEPVVPQEPSSVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 WKSVLSPGSAAQPSSCSISASSTGSSLQGHQERAEPRGGSLAKVSSSLEPVVPQEPSSVV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD GLGPRPQWSPQPVFSGGDASGLGRRRLSFQAEYWACVLPDSLPPSPDRHSPLWNPNKEYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GLGPRPQWSPQPVFSGGDASGLGRRRLSFQAEYWACVLPDSLPPSPDRHSPLWNPNKEYE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD DLLDYTYPLRPGPQLPKHLDSRVPADPVLQDSGVDLDSFSVSPASTLKSPTNVSPNCPPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DLLDYTYPLRPGPQLPKHLDSRVPADPVLQDSGVDLDSFSVSPASTLKSPTNVSPNCPPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD EATALPFSGPREPSLKQWPSRVPQKQGGMGLASWSQLASTPRAPGSRDARWERREPALRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EATALPFSGPREPSLKQWPSRVPQKQGGMGLASWSQLASTPRAPGSRDARWERREPALRG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD AKDRLTIGKHLDMGSPQLRTRDRGWPSPRPEREKRTSQSARRPTCTESRWKSEEEVESDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AKDRLTIGKHLDMGSPQLRTRDRGWPSPRPEREKRTSQSARRPTCTESRWKSEEEVESDD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD EYLALPARLTQVSSLVSYLGSISTLVTLPTGDIKGQSPLEVSDSDGPASFPSSSSQSQLP
       :::::::::::                                                 
CCDS82 EYLALPARLTQ-------------------------------------------------
              490                                                  

              550       560       570       580       590       600
pF1KSD PGAALQGSGDPEGQNPCFLRSFVRAHDSAGEGSLGSSQALGVSSGLLKTRPSLPARLDRW
                                                                   
CCDS82 ------------------------------------------------------------
                                                                   

              610       620       630       640       650       660
pF1KSD PFSDPDVEGQLPRKGGEQGKESLVQCVKTFCCQLEELICWLYNVADVTDHGTAARSNLTS
                                   ::::::::::::::::::::::::::::::::
CCDS82 ----------------------------TFCCQLEELICWLYNVADVTDHGTAARSNLTS
                                         500       510       520   

              670       680       690       700       710       720
pF1KSD LKSSLQLYRQFKKDIDEHQSLTESVLQKGEILLQCLLENTPVLEDVLGRIAKQSGELESH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LKSSLQLYRQFKKDIDEHQSLTESVLQKGEILLQCLLENTPVLEDVLGRIAKQSGELESH
           530       540       550       560       570       580   

              730       740       750       
pF1KSD ADRLYDSILASLDMLAGCTLIPDKKPMAAMEHPCEGV
       :::::::::::::::::::::::::::::::::::::
CCDS82 ADRLYDSILASLDMLAGCTLIPDKKPMAAMEHPCEGV
           590       600       610       620




757 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:10:40 2016 done: Thu Nov  3 02:10:41 2016
 Total Scan time:  4.740 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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