(Linear) (Six-base) MAPSORT of: KIAA0535.seq Check: 3823 from: 1 to: 3141 KIAA0535.orf With 182 enzymes: SgfI * October 24, 2006 15:12 .. AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 35 146 734 2738 2833 3141 Size: 35 111 588 2004 95 308 Fragments arranged by size: 2004 588 308 111 95 35 AflII C'TTAA_G Cuts at: 0 1845 2296 3141 Size: 1845 451 845 Fragments arranged by size: 1845 845 451 AflIII A'CryG_T Cuts at: 0 1131 3141 Size: 1131 2010 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 513 944 3141 Size: 513 431 2197 Fragments arranged by size: 2197 513 431 AlwNI CAG_nnn'CTG Cuts at: 0 13 1723 1726 1794 2512 3141 Size: 13 1710 3 68 718 629 Fragments arranged by size: 1710 718 629 68 13 3 ApoI r'AATT_y Cuts at: 0 403 441 724 903 1202 1423 1618 2076 Size: 403 38 283 179 299 221 195 458 Cuts at: 2076 3021 3141 Size: 945 120 Fragments arranged by size: 945 458 403 299 283 221 195 179 120 38 AvaI C'yCGr_G Cuts at: 0 2325 3141 Size: 2325 816 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 0 345 378 3141 Size: 345 33 2763 Fragments arranged by size: 2763 345 33 BanI G'GyrC_C Cuts at: 0 54 1172 1645 3141 Size: 54 1118 473 1496 Fragments arranged by size: 1496 1118 473 54 BanII G_rGCy'C Cuts at: 0 83 374 1145 1663 2068 3141 Size: 83 291 771 518 405 1073 Fragments arranged by size: 1073 771 518 405 291 83 BbeI G_GCGC'C Cuts at: 0 1649 3141 Size: 1649 1492 BbsI GAAGACnn'nnnn_ Cuts at: 0 221 301 353 1053 1709 2038 2435 3141 Size: 221 80 52 700 656 329 397 706 Fragments arranged by size: 706 700 656 397 329 221 80 52 BfrBI ATG'CAT Cuts at: 0 1215 2218 3141 Size: 1215 1003 923 Fragments arranged by size: 1215 1003 923 BglII A'GATC_T Cuts at: 0 2145 3141 Size: 2145 996 BlpI GC'TnA_GC Cuts at: 0 941 3141 Size: 941 2200 Bme1580I G_kGCm'C Cuts at: 0 1105 1177 2333 3141 Size: 1105 72 1156 808 Fragments arranged by size: 1156 1105 808 72 BmrI ACTGGGnnnn_n' Cuts at: 0 1382 2053 2759 3141 Size: 1382 671 706 382 Fragments arranged by size: 1382 706 671 382 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 2584 3141 Size: 2584 557 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 318 937 1015 2120 3141 Size: 318 619 78 1105 1021 Fragments arranged by size: 1105 1021 619 318 78 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1213 3141 Size: 1213 1928 BsaI GGTCTCn'nnnn_ Cuts at: 0 1087 3141 Size: 1087 2054 BsaAI yAC'GTr Cuts at: 0 1134 2202 2334 3141 Size: 1134 1068 132 807 Fragments arranged by size: 1134 1068 807 132 BsaBI GATnn'nnATC Cuts at: 0 1349 3141 Size: 1349 1792 BsaHI Gr'CG_yC Cuts at: 0 1646 3141 Size: 1646 1495 BsaWI w'CCGG_w Cuts at: 0 2368 3141 Size: 2368 773 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 601 631 1084 1114 1759 1789 2284 2314 Size: 601 30 453 30 645 30 495 30 Cuts at: 2314 3141 Size: 827 Fragments arranged by size: 827 645 601 495 453 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 552 850 2053 2056 2908 2911 3141 Size: 552 298 1203 3 852 3 230 Fragments arranged by size: 1203 852 552 298 230 3 3 BseYI C'CCAG_C Cuts at: 0 605 812 1994 2628 3141 Size: 605 207 1182 634 513 Fragments arranged by size: 1182 634 605 513 207 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 305 614 1661 1865 3141 Size: 305 309 1047 204 1276 Fragments arranged by size: 1276 1047 309 305 204 BsiHKAI G_wGCw'C Cuts at: 0 83 374 1001 1229 2068 3141 Size: 83 291 627 228 839 1073 Fragments arranged by size: 1073 839 627 291 228 83 BsmI GAATG_Cn' Cuts at: 0 786 1946 1963 3094 3141 Size: 786 1160 17 1131 47 Fragments arranged by size: 1160 1131 786 47 17 Bsp1286I G_dGCh'C Cuts at: 0 83 374 1001 1105 1145 1177 1229 1663 Size: 83 291 627 104 40 32 52 434 Cuts at: 1663 2068 2333 3141 Size: 405 265 808 Fragments arranged by size: 808 627 434 405 291 265 104 83 52 40 32 BspEI T'CCGG_A Cuts at: 0 2368 3141 Size: 2368 773 BspHI T'CATG_A Cuts at: 0 284 2726 3141 Size: 284 2442 415 Fragments arranged by size: 2442 415 284 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 2938 3141 Size: 2938 203 BsrDI GCAATG_nn' Cuts at: 0 813 1340 2628 3141 Size: 813 527 1288 513 Fragments arranged by size: 1288 813 527 513 BsrGI T'GTAC_A Cuts at: 0 3056 3141 Size: 3056 85 BssSI C'ACGA_G Cuts at: 0 2378 3141 Size: 2378 763 BstAPI GCAn_nnn'nTGC Cuts at: 0 1723 1726 3141 Size: 1723 3 1415 Fragments arranged by size: 1723 1415 3 BstXI CCAn_nnnn'nTGG Cuts at: 0 1663 3141 Size: 1663 1478 BstYI r'GATC_y Cuts at: 0 2145 3141 Size: 2145 996 BtgI C'CryG_G Cuts at: 0 104 3141 Size: 104 3037 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 497 2209 2333 3141 Size: 497 1712 124 808 Fragments arranged by size: 1712 808 497 124 BtsI GCAGTG_nn' Cuts at: 0 228 1384 2235 3128 3141 Size: 228 1156 851 893 13 Fragments arranged by size: 1156 893 851 228 13 DraI TTT'AAA Cuts at: 0 446 470 3141 Size: 446 24 2671 Fragments arranged by size: 2671 446 24 DraIII CAC_nnn'GTG Cuts at: 0 1185 3141 Size: 1185 1956 EaeI y'GGCC_r Cuts at: 0 1665 2196 2466 3141 Size: 1665 531 270 675 Fragments arranged by size: 1665 675 531 270 EarI CTCTTCn'nnn_ Cuts at: 0 109 519 866 1929 3141 Size: 109 410 347 1063 1212 Fragments arranged by size: 1212 1063 410 347 109 EcoICRI GAG'CTC Cuts at: 0 81 372 2066 3141 Size: 81 291 1694 1075 Fragments arranged by size: 1694 1075 291 81 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 35 146 318 734 937 1015 2120 2738 Size: 35 111 172 416 203 78 1105 618 Cuts at: 2738 2833 3141 Size: 95 308 Fragments arranged by size: 1105 618 416 308 203 172 111 95 78 35 EcoNI CCTnn'n_nnAGG Cuts at: 0 889 1640 2453 3141 Size: 889 751 813 688 Fragments arranged by size: 889 813 751 688 EcoO109I rG'GnC_Cy Cuts at: 0 3004 3141 Size: 3004 137 EcoRI G'AATT_C Cuts at: 0 1423 3141 Size: 1423 1718 HaeII r_GCGC'y Cuts at: 0 1649 3141 Size: 1649 1492 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 340 372 601 633 1759 1791 2666 2698 Size: 340 32 229 32 1126 32 875 32 Cuts at: 2698 3141 Size: 443 Fragments arranged by size: 1126 875 443 340 229 32 32 32 32 HincII GTy'rAC Cuts at: 0 153 3141 Size: 153 2988 HindIII A'AGCT_T Cuts at: 0 2131 2361 2664 3141 Size: 2131 230 303 477 Fragments arranged by size: 2131 477 303 230 KasI G'GCGC_C Cuts at: 0 1645 3141 Size: 1645 1496 MfeI C'AATT_G Cuts at: 0 926 1310 3141 Size: 926 384 1831 Fragments arranged by size: 1831 926 384 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 644 1802 1936 2197 2329 2840 3141 Size: 644 1158 134 261 132 511 301 Fragments arranged by size: 1158 644 511 301 261 134 132 MscI TGG'CCA Cuts at: 0 2198 2468 3141 Size: 2198 270 673 Fragments arranged by size: 2198 673 270 MslI CAynn'nnrTG Cuts at: 0 515 1220 2181 2228 2786 2866 3052 3141 Size: 515 705 961 47 558 80 186 89 Fragments arranged by size: 961 705 558 515 186 89 80 47 MspA1I CmG'CkG Cuts at: 0 124 1321 1723 1751 3141 Size: 124 1197 402 28 1390 Fragments arranged by size: 1390 1197 402 124 28 NarI GG'CG_CC Cuts at: 0 1646 3141 Size: 1646 1495 NcoI C'CATG_G Cuts at: 0 104 3141 Size: 104 3037 NdeI CA'TA_TG Cuts at: 0 3033 3141 Size: 3033 108 NsiI A_TGCA'T Cuts at: 0 1217 2220 3141 Size: 1217 1003 921 Fragments arranged by size: 1217 1003 921 NspI r_CATG'y Cuts at: 0 1801 3141 Size: 1801 1340 PfoI T'CCnGG_A Cuts at: 0 74 1868 2097 2572 3141 Size: 74 1794 229 475 569 Fragments arranged by size: 1794 569 475 229 74 PmlI CAC'GTG Cuts at: 0 1134 2202 2334 3141 Size: 1134 1068 132 807 Fragments arranged by size: 1134 1068 807 132 PpuMI rG'GwC_Cy Cuts at: 0 3004 3141 Size: 3004 137 PstI C_TGCA'G Cuts at: 0 938 1320 1756 3141 Size: 938 382 436 1385 Fragments arranged by size: 1385 938 436 382 PvuII CAG'CTG Cuts at: 0 124 1321 1723 3141 Size: 124 1197 402 1418 Fragments arranged by size: 1418 1197 402 124 SacI G_AGCT'C Cuts at: 0 83 374 2068 3141 Size: 83 291 1694 1073 Fragments arranged by size: 1694 1073 291 83 SfcI C'TryA_G Cuts at: 0 189 934 1316 1752 2013 3141 Size: 189 745 382 436 261 1128 Fragments arranged by size: 1128 745 436 382 261 189 SfoI GGC'GCC Cuts at: 0 1647 3141 Size: 1647 1494 SmlI C'TyrA_G Cuts at: 0 1228 1845 2296 3141 Size: 1228 617 451 845 Fragments arranged by size: 1228 845 617 451 SphI G_CATG'C Cuts at: 0 1801 3141 Size: 1801 1340 StuI AGG'CCT Cuts at: 0 1080 2107 3141 Size: 1080 1027 1034 Fragments arranged by size: 1080 1034 1027 StyI C'CwwG_G Cuts at: 0 104 248 896 1075 1802 2414 2469 3141 Size: 104 144 648 179 727 612 55 672 Fragments arranged by size: 727 672 648 612 179 144 104 55 SwaI ATTT'AAAT Cuts at: 0 446 3141 Size: 446 2695 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 1030 1300 1669 1723 2671 3141 Size: 1030 270 369 54 948 470 Fragments arranged by size: 1030 948 470 369 270 54 TatI w'GTAC_w Cuts at: 0 3056 3141 Size: 3056 85 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 38 70 635 667 1084 1116 1893 1925 Size: 38 32 565 32 417 32 777 32 Cuts at: 1925 2284 2316 2379 2411 3141 Size: 359 32 63 32 730 Fragments arranged by size: 777 730 565 417 359 63 38 32 32 32 32 32 32 XbaI T'CTAG_A Cuts at: 0 2070 3141 Size: 2070 1071 XmnI GAAnn'nnTTC Cuts at: 0 308 3141 Size: 308 2833 Enzymes that do cut: AcuI AflII AflIII AlfI AlwNI ApoI AvaI BaeI BanI BanII BbeI BbsI BfrBI BglII BlpI Bme1580I BmrI BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrDI BsrGI BssSI BstAPI BstXI BstYI BtgI BtgZI BtsI DraI DraIII EaeI EarI EcoICRI Eco57MI EcoNI EcoO109I EcoRI HaeII Hin4I HincII HindIII KasI MfeI MmeI MscI MslI MspA1I NarI NcoI NdeI NsiI NspI PfoI PmlI PpuMI PstI PvuII SacI SfcI SfoI SmlI SphI StuI StyI SwaI TaqII TatI TstI XbaI XmnI Enzymes that do not cut: AarI AatII AccI Acc65I AclI AfeI AgeI AhdI AleI AloI ApaI ApaLI AscI AseI AsiSI AvrII BamHI BbvCI BcgI BciVI BclI BglI BmgBI BmtI Bpu10I BsiEI BsiWI BsmBI BsrBI BsrFI BssHII BstBI BstEII BstZ17I Bsu36I ClaI CspCI DrdI EagI EciI EcoRV FalI FseI FspI FspAI HpaI KpnI MluI NaeI NgoMIV NheI NotI NruI PacI PasI PciI PflMI PmeI PpiI PshAI PsiI PspOMI PspXI PsrI PvuI RsrII SacII SalI SanDI SapI SbfI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SrfI SspI Tth111I XcmI XhoI XmaI ZraI