(Linear) (Six-base) MAPSORT of: KIAA0532.seq Check: 532 from: 1 to: 4521 KIAA0532.orf With 182 enzymes: SgfI * October 24, 2006 15:12 .. AccI GT'mk_AC Cuts at: 0 1752 3068 4521 Size: 1752 1316 1453 Fragments arranged by size: 1752 1453 1316 Acc65I G'GTAC_C Cuts at: 0 3574 4521 Size: 3574 947 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 18 150 324 1151 1978 3462 3794 4018 Size: 18 132 174 827 827 1484 332 224 Cuts at: 4018 4521 Size: 503 Fragments arranged by size: 1484 827 827 503 332 224 174 132 18 AflIII A'CryG_T Cuts at: 0 47 4521 Size: 47 4474 AhdI GACnn_n'nnGTC Cuts at: 0 4054 4346 4521 Size: 4054 292 175 Fragments arranged by size: 4054 292 175 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 3754 4521 Size: 3754 767 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 57 79 89 111 4521 Size: 57 22 10 22 4410 Fragments arranged by size: 4410 57 22 22 10 AlwNI CAG_nnn'CTG Cuts at: 0 2035 3717 4041 4521 Size: 2035 1682 324 480 Fragments arranged by size: 2035 1682 480 324 ApaI G_GGCC'C Cuts at: 0 1422 3384 3511 4521 Size: 1422 1962 127 1010 Fragments arranged by size: 1962 1422 1010 127 ApaLI G'TGCA_C Cuts at: 0 927 1567 3349 4202 4521 Size: 927 640 1782 853 319 Fragments arranged by size: 1782 927 853 640 319 ApoI r'AATT_y Cuts at: 0 1258 2115 2303 3234 4477 4521 Size: 1258 857 188 931 1243 44 Fragments arranged by size: 1258 1243 931 857 188 44 AseI AT'TA_AT Cuts at: 0 3011 4521 Size: 3011 1510 AvaI C'yCGr_G Cuts at: 0 2110 2213 2727 3503 3685 3840 4521 Size: 2110 103 514 776 182 155 681 Fragments arranged by size: 2110 776 681 514 182 155 103 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 0 34 67 4521 Size: 34 33 4454 Fragments arranged by size: 4454 34 33 BanI G'GyrC_C Cuts at: 0 891 3574 4521 Size: 891 2683 947 Fragments arranged by size: 2683 947 891 BanII G_rGCy'C Cuts at: 0 1422 3384 3511 4093 4521 Size: 1422 1962 127 582 428 Fragments arranged by size: 1962 1422 582 428 127 BbsI GAAGACnn'nnnn_ Cuts at: 0 330 648 836 1778 2207 2526 3062 4458 Size: 330 318 188 942 429 319 536 1396 Cuts at: 4458 4521 Size: 63 Fragments arranged by size: 1396 942 536 429 330 319 318 188 63 BciVI GTATCCnnnnn_n' Cuts at: 0 390 4521 Size: 390 4131 BclI T'GATC_A Cuts at: 0 3765 4521 Size: 3765 756 BfrBI ATG'CAT Cuts at: 0 1984 4521 Size: 1984 2537 BglI GCCn_nnn'nGGC Cuts at: 0 3379 4521 Size: 3379 1142 BglII A'GATC_T Cuts at: 0 2792 4521 Size: 2792 1729 BlpI GC'TnA_GC Cuts at: 0 2681 3896 4521 Size: 2681 1215 625 Fragments arranged by size: 2681 1215 625 Bme1580I G_kGCm'C Cuts at: 0 931 1422 1571 3353 3384 3511 4206 4521 Size: 931 491 149 1782 31 127 695 315 Fragments arranged by size: 1782 931 695 491 315 149 127 31 BmgBI CAC'GTC Cuts at: 0 4074 4521 Size: 4074 447 BmrI ACTGGGnnnn_n' Cuts at: 0 1557 4521 Size: 1557 2964 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1250 2073 3519 3533 4521 Size: 1250 823 1446 14 988 Fragments arranged by size: 1446 1250 988 823 14 Bpu10I CC'TnA_GC Cuts at: 0 4092 4460 4521 Size: 4092 368 61 Fragments arranged by size: 4092 368 61 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 89 941 3247 4228 4521 Size: 89 852 2306 981 293 Fragments arranged by size: 2306 981 852 293 89 BsaI GGTCTCn'nnnn_ Cuts at: 0 3416 4521 Size: 3416 1105 BsaAI yAC'GTr Cuts at: 0 3051 4521 Size: 3051 1470 BsaBI GATnn'nnATC Cuts at: 0 631 4521 Size: 631 3890 BsaHI Gr'CG_yC Cuts at: 0 3530 4521 Size: 3530 991 BsaWI w'CCGG_w Cuts at: 0 2358 4521 Size: 2358 2163 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 79 109 1223 1253 3506 3536 4521 Size: 79 30 1114 30 2253 30 985 Fragments arranged by size: 2253 1114 985 79 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 343 1017 2905 3281 3658 3679 3902 4521 Size: 343 674 1888 376 377 21 223 619 Fragments arranged by size: 1888 674 619 377 376 343 223 21 BseYI C'CCAG_C Cuts at: 0 1943 2010 3376 3398 3726 4360 4521 Size: 1943 67 1366 22 328 634 161 Fragments arranged by size: 1943 1366 634 328 161 67 22 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 150 207 1196 4258 4521 Size: 150 57 989 3062 263 Fragments arranged by size: 3062 989 263 150 57 BsiHKAI G_wGCw'C Cuts at: 0 931 1571 2320 3353 3650 4139 4206 4521 Size: 931 640 749 1033 297 489 67 315 Fragments arranged by size: 1033 931 749 640 489 315 297 67 BsmBI CGTCTCn'nnnn_ Cuts at: 0 3537 4521 Size: 3537 984 Bsp1286I G_dGCh'C Cuts at: 0 931 1422 1571 2320 3353 3384 3511 3650 Size: 931 491 149 749 1033 31 127 139 Cuts at: 3650 4093 4139 4206 4521 Size: 443 46 67 315 Fragments arranged by size: 1033 931 749 491 443 315 149 139 127 67 46 31 BspEI T'CCGG_A Cuts at: 0 2358 4521 Size: 2358 2163 BspHI T'CATG_A Cuts at: 0 998 2328 4521 Size: 998 1330 2193 Fragments arranged by size: 2193 1330 998 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 2816 3045 3101 3156 4521 Size: 2816 229 56 55 1365 Fragments arranged by size: 2816 1365 229 56 55 BsrDI GCAATG_nn' Cuts at: 0 3368 4521 Size: 3368 1153 BsrFI r'CCGG_y Cuts at: 0 3626 3656 4521 Size: 3626 30 865 Fragments arranged by size: 3626 865 30 BsrGI T'GTAC_A Cuts at: 0 1125 2514 3269 4521 Size: 1125 1389 755 1252 Fragments arranged by size: 1389 1252 1125 755 BstAPI GCAn_nnn'nTGC Cuts at: 0 3348 4521 Size: 3348 1173 BstXI CCAn_nnnn'nTGG Cuts at: 0 3189 3609 4521 Size: 3189 420 912 Fragments arranged by size: 3189 912 420 BstYI r'GATC_y Cuts at: 0 89 1247 2792 4521 Size: 89 1158 1545 1729 Fragments arranged by size: 1729 1545 1158 89 BstZ17I GTA'TAC Cuts at: 0 1753 3069 4521 Size: 1753 1316 1452 Fragments arranged by size: 1753 1452 1316 Bsu36I CC'TnA_GG Cuts at: 0 320 4504 4521 Size: 320 4184 17 Fragments arranged by size: 4184 320 17 BtgI C'CryG_G Cuts at: 0 1736 4484 4521 Size: 1736 2748 37 Fragments arranged by size: 2748 1736 37 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 212 4521 Size: 212 4309 BtsI GCAGTG_nn' Cuts at: 0 284 376 1099 2651 3332 4521 Size: 284 92 723 1552 681 1189 Fragments arranged by size: 1552 1189 723 681 284 92 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 0 3534 3569 4521 Size: 3534 35 952 Fragments arranged by size: 3534 952 35 DraI TTT'AAA Cuts at: 0 2616 4521 Size: 2616 1905 EaeI y'GGCC_r Cuts at: 0 387 4521 Size: 387 4134 EarI CTCTTCn'nnn_ Cuts at: 0 2747 4144 4521 Size: 2747 1397 377 Fragments arranged by size: 2747 1397 377 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 18 150 324 1151 1250 1978 2073 3462 Size: 18 132 174 827 99 728 95 1389 Cuts at: 3462 3519 3533 3794 4018 4521 Size: 57 14 261 224 503 Fragments arranged by size: 1389 827 728 503 261 224 174 132 99 95 57 18 14 EcoNI CCTnn'n_nnAGG Cuts at: 0 2027 3697 4521 Size: 2027 1670 824 Fragments arranged by size: 2027 1670 824 EcoO109I rG'GnC_Cy Cuts at: 0 1419 1446 2566 2805 3185 3319 3380 3381 Size: 1419 27 1120 239 380 134 61 1 Cuts at: 3381 3507 3508 3714 4521 Size: 126 1 206 807 Fragments arranged by size: 1419 1120 807 380 239 206 134 126 61 27 1 1 EcoRI G'AATT_C Cuts at: 0 1258 4521 Size: 1258 3263 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 2398 4521 Size: 2398 2123 HaeII r_GCGC'y Cuts at: 0 453 2596 3966 4521 Size: 453 2143 1370 555 Fragments arranged by size: 2143 1370 555 453 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 635 667 993 1025 2207 2239 3308 3340 Size: 635 32 326 32 1182 32 1069 32 Cuts at: 3340 3616 3648 3889 3921 4040 4072 4282 4314 Size: 276 32 241 32 119 32 210 32 Cuts at: 4314 4332 4364 4521 Size: 18 32 157 Fragments arranged by size: 1182 1069 635 326 276 241 210 157 119 32 32 32 32 32 32 32 32 32 18 HindIII A'AGCT_T Cuts at: 0 296 1526 4521 Size: 296 1230 2995 Fragments arranged by size: 2995 1230 296 KpnI G_GTAC'C Cuts at: 0 3578 4521 Size: 3578 943 MfeI C'AATT_G Cuts at: 0 3749 4521 Size: 3749 772 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 2915 2948 4521 Size: 2915 33 1573 Fragments arranged by size: 2915 1573 33 MscI TGG'CCA Cuts at: 0 389 4521 Size: 389 4132 MslI CAynn'nnrTG Cuts at: 0 889 2522 2542 3865 4521 Size: 889 1633 20 1323 656 Fragments arranged by size: 1633 1323 889 656 20 MspA1I CmG'CkG Cuts at: 0 446 471 2680 3376 4364 4521 Size: 446 25 2209 696 988 157 Fragments arranged by size: 2209 988 696 446 157 25 NcoI C'CATG_G Cuts at: 0 1736 4484 4521 Size: 1736 2748 37 Fragments arranged by size: 2748 1736 37 NdeI CA'TA_TG Cuts at: 0 1291 1383 4521 Size: 1291 92 3138 Fragments arranged by size: 3138 1291 92 NsiI A_TGCA'T Cuts at: 0 1986 4521 Size: 1986 2535 NspI r_CATG'y Cuts at: 0 51 268 3988 4521 Size: 51 217 3720 533 Fragments arranged by size: 3720 533 217 51 PasI CC'CwG_GG Cuts at: 0 1415 2746 4521 Size: 1415 1331 1775 Fragments arranged by size: 1775 1415 1331 PciI A'CATG_T Cuts at: 0 47 4521 Size: 47 4474 PflMI CCAn_nnn'nTGG Cuts at: 0 4440 4521 Size: 4440 81 PfoI T'CCnGG_A Cuts at: 0 1077 1698 2120 4521 Size: 1077 621 422 2401 Fragments arranged by size: 2401 1077 621 422 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 79 111 567 599 4521 Size: 79 32 456 32 3922 Fragments arranged by size: 3922 456 79 32 32 PpuMI rG'GwC_Cy Cuts at: 0 1446 2566 2805 3319 4521 Size: 1446 1120 239 514 1202 Fragments arranged by size: 1446 1202 1120 514 239 PshAI GACnn'nnGTC Cuts at: 0 1964 2207 4521 Size: 1964 243 2314 Fragments arranged by size: 2314 1964 243 PsiI TTA'TAA Cuts at: 0 1817 2254 2831 4521 Size: 1817 437 577 1690 Fragments arranged by size: 1817 1690 577 437 PspOMI G'GGCC_C Cuts at: 0 1418 3380 3507 4521 Size: 1418 1962 127 1014 Fragments arranged by size: 1962 1418 1014 127 PspXI vC'TCGA_Gb Cuts at: 0 2213 4521 Size: 2213 2308 PstI C_TGCA'G Cuts at: 0 2813 4404 4521 Size: 2813 1591 117 Fragments arranged by size: 2813 1591 117 PvuII CAG'CTG Cuts at: 0 446 471 2680 4364 4521 Size: 446 25 2209 1684 157 Fragments arranged by size: 2209 1684 446 157 25 SapI GCTCTTCn'nnn_ Cuts at: 0 2747 4144 4521 Size: 2747 1397 377 Fragments arranged by size: 2747 1397 377 ScaI AGT'ACT Cuts at: 0 1976 4521 Size: 1976 2545 SexAI A'CCwGG_T Cuts at: 0 4439 4521 Size: 4439 82 SfcI C'TryA_G Cuts at: 0 654 722 1480 2066 2147 2809 4400 4521 Size: 654 68 758 586 81 662 1591 121 Fragments arranged by size: 1591 758 662 654 586 121 81 68 SmaI CCC'GGG Cuts at: 0 2729 3505 4521 Size: 2729 776 1016 Fragments arranged by size: 2729 1016 776 SmlI C'TyrA_G Cuts at: 0 104 956 2213 3262 4243 4521 Size: 104 852 1257 1049 981 278 Fragments arranged by size: 1257 1049 981 852 278 104 SspI AAT'ATT Cuts at: 0 411 1811 4521 Size: 411 1400 2710 Fragments arranged by size: 2710 1400 411 StuI AGG'CCT Cuts at: 0 4177 4521 Size: 4177 344 StyI C'CwwG_G Cuts at: 0 255 1736 3188 3827 4484 4521 Size: 255 1481 1452 639 657 37 Fragments arranged by size: 1481 1452 657 639 255 37 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 2677 4521 Size: 2677 1844 TatI w'GTAC_w Cuts at: 0 440 563 615 872 1125 1974 2514 3269 Size: 440 123 52 257 253 849 540 755 Cuts at: 3269 4310 4521 Size: 1041 211 Fragments arranged by size: 1041 849 755 540 440 257 253 211 123 52 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 3084 3116 3506 3538 4521 Size: 3084 32 390 32 983 Fragments arranged by size: 3084 983 390 32 32 XbaI T'CTAG_A Cuts at: 0 123 2412 4521 Size: 123 2289 2109 Fragments arranged by size: 2289 2109 123 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 201 2094 2931 4521 Size: 201 1893 837 1590 Fragments arranged by size: 1893 1590 837 201 XhoI C'TCGA_G Cuts at: 0 2213 4521 Size: 2213 2308 XmaI C'CCGG_G Cuts at: 0 2727 3503 4521 Size: 2727 776 1018 Fragments arranged by size: 2727 1018 776 XmnI GAAnn'nnTTC Cuts at: 0 163 410 579 1529 2888 4521 Size: 163 247 169 950 1359 1633 Fragments arranged by size: 1633 1359 950 247 169 163 Enzymes that do cut: AccI Acc65I AcuI AflIII AhdI AlfI AloI AlwNI ApaI ApaLI ApoI AseI AvaI BaeI BanI BanII BbsI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiHKAI BsmBI Bsp1286I BspEI BspHI BspMI BsrDI BsrFI BsrGI BstAPI BstXI BstYI BstZ17I Bsu36I BtgI BtgZI BtsI CspCI DraI EaeI EarI Eco57MI EcoNI EcoO109I EcoRI FalI HaeII Hin4I HindIII KpnI MfeI MmeI MscI MslI MspA1I NcoI NdeI NsiI NspI PasI PciI PflMI PfoI PpiI PpuMI PshAI PsiI PspOMI PspXI PstI PvuII SapI ScaI SexAI SfcI SmaI SmlI SspI StuI StyI TaqII TatI TstI XbaI XcmI XhoI XmaI XmnI Enzymes that do not cut: AarI AatII AclI AfeI AflII AgeI AleI AscI AsiSI AvrII BamHI BbeI BbvCI BcgI BmtI BplI BsiEI BsiWI BsmI BsrBI BssHII BssSI BstBI BstEII ClaI DraIII DrdI EagI EciI EcoICRI EcoRV FseI FspI FspAI HincII HpaI KasI MluI NaeI NarI NgoMIV NheI NotI NruI PacI PmeI PmlI PsrI PvuI RsrII SacI SacII SalI SanDI SbfI SfiI SfoI SgfI SgrAI SnaBI SpeI SphI SrfI SwaI Tth111I ZraI